RNA id: XM_036944304.1


Basic Information

Item Value
RNA id XM_036944304.1
length 6356
RNA type mRNA
GC content 0.45
exon number 11
gene id si:dkeyp-77h1.4
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28297202 ~ 28318817 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaattgctgcgctttggtccgattcttCCTCATCAGACGATGACCGTTACAAGAATAGAGCCAGGAGATCTGATGAAGATGAAGACAGTCAGTGTGGTGGTGCTGAGCTTGCTGCTCTGCTCAGCTCTGTCGGCCCCTTTGAAAGGTAAAGAAGACTCCCAGAAGACCATGTTCTTTGGGGAGGACTTCCATCTGCAGCTGCCCTCCCTGGCTGCAGaggttttgttccagcccagtaaTGCCAAGGCGGGGGTTGAGGTGGTCCTGATGCGGGGTGGGTCCGTGGTCGGTAACCGTGCCAAGCTCAACAGTCAGCTCAGTCACCTGATCTTAGCGAACGTGGGCGAGGGGGACGAGGGGACGTACTCGGTGAAGAACAACGAACAGCCGGAAGAGGTCCGACGCATCACACTCATCGTCAGAGACTGTTCCAACGAGCAGAACGTTAAGTATGGGGAGAACTACCACATCCAGCTGGTGGGGGTGGAGGCTCCCATCACCCTGGAGTATAGGCCCAGTGCTGTGGAGGCCAACCTGACCTCCAGGCCGCCCCTGGTGCTGATGACCCGAGGAGGGCTCTCCAGAGACGGGTACCAGGGGCGCCTGAGCGTCAACGAGTACCGGATCACTCTCAACGCCGTGACAGGCGCCGATGAGGGAAGCTACACCGTCAGAGACACGAACCTGAAGATCATGAGGAAGGTCTGCCTAAATGTCAAAGAACACCAGAACTTTGTGAAGCTGCCGTACGCTGGCACCCTGAAGATCAACCTGATTCTGAATGCCTCCATGGTGCGTCTGTTCTACACGCCTGACTACGACTTAAAAACCAGACAGATCCTGGACGGGGGACAGTTAACGGTGCCAGCAGACCTGGATCTGGTGGGGCGGATCTCTCTGGAACCGTCTGTGGTCATCCTGGACCAGGTCAAGGCCAGCGACGTCGGACAGTTCAAGGTCACGGACATACTGGGGTTTCCTGTGTCCAACGTCTACCTGGAagtggaggcctACAAGCTGCCGTCCCTCTACGTGGCAATCATAGCACTGGTGGGCTTCCTGGTCCTCCTGCTGTTGGTGTGTCTGCTGTCCTGCCTGGTCAAGCAGAAGAAGAGGGCTGCCAAGGCCCGAGCCATCGAGAAGATTGCCCAAAACGCAGGCAAGGAGGACGAGGGAGATGCCTTCAGACAGGTGGTGAAGAACATTACTCAGTTTGAGGAGTCTATAGCCCAGTCCATCGACATCACAGAGAAGTCTCAGAGCACTGAGGTGGACATTAAAGGTCTGGAGGTGTCATCCAAGGAGGTGGCATGTGGTAATCTGGAGACCAGTGACTCAGGGGTGGAGTTTAACACCACTGGCCTCCCATTGGACACTGACACTGACGTCCCCGACCAGATTCCAGAATCAGAGGCTGAGACTGAGAGTGTTGCCTTCGTCCCAGAAACCAAGCCAAGCCCACCCCCGGTTACCAAACCTAGCCCGGTTCCCAAAATCAACAAAATCCCTGAACCAGCTCCTGAACCAAAGTTGACCATAACCAAACCCGTTGAGACCAAACTCAGCCCAATCCCAAGCCCGGTCTCCAAGCAGGCTCCAAGCCCCATTGCCAAAACACCTGAACCAGCCAAAACTCCTGAACCGAAAATACCTGAATTGAAAACACCTGAACCAACCAAAACTCCTGATTTGAAAACTCCTGATCCGAAAACACCTGAATTGAAAACACCTGAACCAGCCAAAACACCTATTGCTGTGTCTCCAAGCCCGGTGTCCCCTAAGCCAACCCCACCCCTGACCCCTGTCTCCAAACCAACTGCACCCCAACCATCAAGCCCCGAACTCGCCAAGCTGGTGACACCAGCCCCCGAACTCCCCAAGCCGGTGACACCAACCCCGGAATCCCAAAAGCCTGTGACACCAATCCAGACTCCGACCCCAACCCCAATGCTGAGCCCTGAACCTGCTCCGACCACCAATGGCACACCCGAACCACCAGCACCTGAATCCAAACCTAACACTGCTCTGGCCCCAGTGGGTCTGATCGAAAGTCCTGTCGCCAAGGCAACCCCGCCTAAAACCCCTGAGGTGGAGGTGACCGCCCCAAGTAGTCCAGCCCTTGAGGCCAAAATGGACGCCACAGCTGAGAAAAACAACGCCACCACCGCAACCTGAGAACAGTCCCTGCACTCCTCCAAGGGAAACCCCACAGATCCATTATCCTATTCTCCTCCACCACTGTAGACAGACAATCGAACACCCCCCTTACCAAATAAGGAAGAAATCACTGCTACTATCGAGGCTGGGACTTAGATTTAACACTTCTAATGCTCAAACATGCTGTAGTTTGTTATGATAGCTAACTCACCTGTACCTAACACTAACATTATCTTTGAGATACTTTTTTCAATTCACAGATACTTTTCACAAGATAGGAAATATAAGCAAGCGAGTCCATTTTGTCAGACGTTttagctgttgttgttttttttttacatttctatgCTGCATACTCTTTTTTAGTGTGTAAACTAGAGTATGACTGCCGGTCTGCCAACAAAATCAGTTGCAGAGTTTACAAGTAAAATGTTAAACCTAGCTACTTTAGATATGTTTTATTTTCAGGTGTGCAGAATGGTTCCACACCCTTTTACAAAGATATAGGAACTTTAGAATGGCAAGTGAACATGACTCAATCTAATTCAACTACATCTATGACCACTTACTCCTTTTTTGGAATGATAAAACCTTTGATGATGCCTGCTCTAATCTCAGCATGAAAAAACAGACCAAAACGAAAGCACGAACAGCTCGTAAATTTGCAACGGACCTTTTTTAAATCTCATATGATGAAACCAATGACATGATTTAGCCCCCCCAAGGACTTATAAAAGTGACTATGACATAACGTTCTCGTCAAACTGGATGAATTTAAATCACCTTTCTATCAAACTGGACTGGATTCCTTCTCCTTGTGACATTCTCTATACGTTTTCCTGAAACCTGGGAATCCGGGAATCTGGAATTTTCCTGCTGGTCCTCTGCCGTCCTATAGAAACATCTAGAAAGCTTGAATGGTGAAACATCCTGATACAAAGGAGCATGGCATTATCCCAGCAACACTAATACCTGAATGCTGAACTCTAACATCAATACCTTCTGCTAAACTAAGTCTAACTTTTGTTTAAAATTGATGTTTCATGTGATTGTGCTTCCAACTACTTGAGAGGCTGTATTGGTTATAAGGTGTTGGCCAACTCTGACTGTCCCAGTGGATTTCTAGAATCAGATTAATCGAAGAGAAAGAGCTTGTTTTGATCCTTGACCTCACCCCAGGACCTGAAGACCCCAACGACACACCTCAGCACTTTAAGCAATCCCCAGTGAATCTTGGGAAATGTAGTGCTGATTGTTATTCTGCTGACTACAACtatgagagtgggagagggataagaggaggggtCTGGTGAGTGATGTCATTGGCTTAGTCCTAACATTTAAAAAAGGAATCCTCCCTCCTCTATGTTCACTTCTGTCCTTCCTTCTGTCCTtccttctgtccttccttccttctgtaCTCCCTCTTTTCCTTCCTCTCTTGCTTGCAGCAGGTGGTGAAGTACATTATTATGGCATGGTTTCATCTGGCCGATAGATGTAGTTTTACTGTTGGTCCTGCCCTCTTGACTTCTCATTTATAGCTTATGGGTCAGCCTTTATACCCCATGATGACTTATAAAAGTACAGTATGAAAGTATAGTCTTCCCTGAGATAATAGAACAGACCCATGTCAGACTATTCCTTGCCTACACACAATCTACATGCATTACAGTCATCTATGAACTACATACTGGAGGCCAAATGTAGATGTGTTCCACGGCTCTGATGCCTAGTATGGTGATCTCACAGTACAGTATACATGTAGTTCTGGTTGTTTGCTCCAGCCTAAAACAGACACTTCACAAATAGGGTTAACCCACTAGCATCCATCCACAGCACTGGATATGATGTCAAGGCATTGGTTGATGTGTTCTAATAGCCTACCCTATTGCCATTGGTCTCTCTGACTGCCCTAAAAAGGTCCTGCGAGAACTTCACCAACTATTAACTCACTGTACCACCATCTCCAGGACTGTGCCATGACACCATCTGTCTTTAGTTGCTTGAAGCTATGTTGCTCTAGCCTAGATTTACAGTGCAATAAGACTTTGCTGGTGGTTAAAACTCCTGTAGCCGCTATGTGTTACAGGAGGAGGTGTGCAGATACATTTTGCTTAACAAAAGACATCTCTACCTCAGTGTTTTAACTGACCGTCGTGACAGACACCATGAATGGTACATTGAGTTCAGTGGACTACATCTAAAAGCATTTAGGATTTTTAAGAGAAGCACAAATAGGAGCTGTGTTAAATTAACCAACCCATCAATCAGTTGTTGGAACACATAGAAAGTACATCCATCTTCAACTTCAAACGATGGCCTTTCTCTTTCTAAACACTTCCACAATTCTAAGACGTTTTTTAATGCTAAAATGAATATGAGAATAAAATGAAAGTTAAAAGCCATATGGTAAGATAGTGATATAGATGTTATGATTAGTACAGTATATGAATCATGATGAATACAGTATGAATACTTTAGTGTTTGAGGTGCCTAAATTCTTTGCTATATTGTCAATCAACTGATGTAAGTGATAAAAGGTCAATGATTATGTAAAATTATACCACTGAAGAGATTTGGCCCCAATCTCGATCACGATCTCAATCTCGATCTCAATCTCGATCTTGATCGCATTGCTCGTCAAGCTCTGTTGTGTGGAGCCGTAACACCCATTTAGGCAATACTAAAAGCAGTGTTTAGCTgtttctgcacacacacacacacacacacacaaacactcccttaTGACGCTGCTGACGAGGTTCAGCATTGTAAATATTGCATGTGTAAGGTTTAAAAAGTCTCCTCTCAAAGGTTGAATGTGTTTAGTGTATAGAATGGCCGTTGTATTATACTTGATGATATAAAAAAGCTAATCTAATTTCTCACCTGTGCAAAGCCTACATGCTGattatataatatactgtacacacacacactaatcttcACTAACTTATAAAATACTAACTTGAACAACTGAAAATGGTAAACACAACTGAATAAGTGCATATTTTTCCGCATCACAGATCTTCGAATAGATCTCTAAAATATTTTGATTGGATTAACTTTTATTAGTACTATTTCAACCCTATGATGATAACATTCACAGTATAACACCCTTACataacttatatatatatatatatttaaaaaatacagaaTGATCTATGTCACTTTAAAGATAGACGTTTATTGCAGCATGTCCACATGATCTCCTCAAagacagtattattattattcatatttttctgCTTTTATAAAagccgtctgtgtgtgtgtgtgtggaggattgATCAGTCATACTGTTATCTTCatcctaatgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtggaggattgATCAGTCATAGTGTTATCTTCAtcctaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaggattgATCAGTCATAATGTTATCTTCATcctaatgtgtgtgcgtgtgtgtgcgtgtgtgatcgTACCTGAGTGAGTGTGTTGTGCGTGCCCGtattgtgtgcatgcgtgcgtatgACACATCATTTTGTATCTGTGTCTAGGTATAAGCCTCTAGCCTATGTGTGTGCAATGAGAAAATAAAATCACAACTTCAGCTGTATGTCGACGTCACATATCCATGCTTAGAAATGATTGTCCTCAATGATCTGCTTATCATCTAACATTTGTTTAGAAAACTATCTGTGTTTGTCCAGACTCAGTATGTGGTTAACATCACACAAACCTGCACCTCTGAGGTGCTCTACACCAGATGACTCTCATCTTTGATTTAGTGCCTCAAATATGAAATCAAATATTCAATGGCTAGTCAGCCTATATTCTATAAATACACTCCAAGAGGCACCGTTTGGTTTATATGATGTAGGTCAGCGGTAAAGTACTATGAGCAGACCTGACTACCTtataggtctactgtactgtatatagagacacaacacagtcagGAGATACAGAATATTGTAGTCAGGACAGGAAGTGTTTAATATAATGCACTTCGACACTCAGTCATGATTGGAAGAGTGATAAATTACCTAGTTGCTTGGTATTTGGTTATCAGGGTTTATTTGAATGTGCATTAGCATGAGATGAATAACATATTGAAGTGTATTGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148246 lncRNA upstream 38254 28264194 ~ 28265454 (+) True G128531
TU148195 lncRNA upstream 52947 28247437 ~ 28250761 (+) True ddr1
TU148171 lncRNA upstream 122707 28180682 ~ 28181001 (+) True G128474
TU148168 lncRNA upstream 132388 28170574 ~ 28171320 (+) True LOC110485682
TU148155 lncRNA upstream 162803 28140278 ~ 28140905 (+) True G128459
TU148276 lncRNA downstream 60965 28379782 ~ 28380102 (+) True G128561
TU148400 lncRNA downstream 249499 28568316 ~ 28600609 (+) True G128679
TU148373 lncRNA downstream 280470 28599287 ~ 28644026 (+) True G128652
TU148440 lncRNA downstream 314779 28633596 ~ 28634986 (+) True G128719
TU148361 lncRNA downstream 369436 28688253 ~ 28689570 (+) True G128640
XM_036933644.1 mRNA upstream 6968 28281112 ~ 28296740 (+) True LOC110485723
XM_021556890.2 mRNA upstream 23428 28270251 ~ 28280280 (+) True LOC110485735
XM_036944287.1 mRNA upstream 52942 28194563 ~ 28250766 (+) False ddr1
XM_036944289.1 mRNA upstream 55741 28194562 ~ 28247967 (+) False ddr1
XM_021556935.2 mRNA downstream 12916 28331733 ~ 28334614 (+) False ino80e
XM_021556951.2 mRNA downstream 12916 28331733 ~ 28334614 (+) True ino80e
XM_021556914.2 mRNA downstream 16693 28335510 ~ 28338650 (+) True LOC110485753
XM_036944357.1 mRNA downstream 20022 28338839 ~ 28356242 (+) False vars1
XM_036944361.1 mRNA downstream 20022 28338839 ~ 28356242 (+) True vars1
TU148132 other upstream 214263 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 586545 27716482 ~ 27717163 (+) True G128185
TU147350 other upstream 1000153 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 1113115 27189991 ~ 27190593 (+) True G127644
TU147247 other upstream 1143063 27148176 ~ 27160645 (+) True LOC110485212
TU148570 other downstream 613239 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 621082 28939899 ~ 28981288 (+) True G128853
TU148818 other downstream 1158800 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 1165816 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 1281209 29600026 ~ 29641096 (+) True G130308

Expression Profile