RNA id: XM_036944347.1


Basic Information

Item Value
RNA id XM_036944347.1
length 4350
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC110485793
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28318045 ~ 28329196 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTAACACCAACATTTTATTGTTTACAGTTGTCATACTGCCCTCTCCATACGCCCTAGTTACGTTAGTACAAATCCAACATAGGCCTACCAAAATAaatacacagcctctctctcctatcccttCCAAGCAAACCCCTCCCTGTGAAAAACAGATATCCCCCTACATCCCCGACCCACTGCCTGATCCTATCCCCTGACCGATTCCCTCTTTTGTTTCCAGAACAGCAGACAGAAATAGAATCTTCTCCACCGTGCAATGCCATAAAtcgctgctgcctgcctgcctgccggtcCATCCTGGCCAGCAGCTGCggctccgtccctccctccctccctgcctccctccctccctccctccgtttctCCTCAGTGTTAATGGACCCTAGTCTTCAGCCAAGCTGagtttggagagagagggagaaggctgCTGTCGGATGGTGTTTGATGGTGACCCTTGTCTGTTTAATTGTTTCTAGATAAATCTCCATTTGACTGGTTGGATGAGAAATTGGAATGTACAAAAATCACACAAAAGATACCAACAACAACTGCAATAAAAGCCTTCTCCCTGACCACAAGGAGAAGCTGATCCAGGCTATTAAAAGAATAAAGCATGAGGTAGACGAGTgctgggaggcagagagagagacgtacaTATGGTCTGTTGGTGTAGAGaGATGTTTTGATAATCTGGAACGGGAGGTCCGAGCTGAGTTCCAGAACCTCCATCGCTTCCTGGACGAAGAGGAGACCATGGACATGGAGCGACtgaagaaggagaaagagaagagggtgaAGCTGcttagggagagggagaaaaagatcGCCATGCAGGGAAGAGATCTGGAGAGAGGCATTGCCACGCTAAACAACAAACTGGCCGAGGAGGATAGTCCCAAACTGCTCAAAGAGATTCAAGACCTCTTGAAAAGgTCCCATGTGGCTTTCATACCCCCTCCCCAGGTGGATGTGGAGGTGCGATCAGCACACTTTGTGGGGCCCATCCAGTACAGGATATGGAAACACATGAAGAGCTGCCTGTACCCAAatatcaCTGAAGTGACCTTTGACCCAGAGACAGCCCACCCCCTCCTCACACTCTCCCCCAGCTGCACTTCTGTGTGGTTCGAGGAGGACAAAGTTATCCCCAAGTCCTCGGAGGAGGAGCAGCCCCCCAACCCCCGCTGCTTCCACTACTACTACAGTGTCATGGGCCGAGAAGGTTTCATCACCGGACGCCATtactgggaggtggaggtgggccGCAAGACAGCGTGGCGGCTGGGTGTGGCCAGGGAGGACGTCCACCGGGGGGAGATGGACTCCAGCGGGACCAGTAACGGTCTCTGGACCCTATCCCTGAAGGGAGGGGCCATCTTGGCCTGTACAGACCCCAAACCCACCAAGGTCCCGGTGTCCATCAGGCCCGTCCGGATCGGAGTGTTCTTAGACTGTGAGAAGGAGGAAGTAGCGTTCTATAACGCTGTTACCATGACGCCGCTGTACACATTCTCCATGGAAACGGTGTTCGTTCCGCTGATCCCCTTCTATAACCCATGTGACACGGACGATGGGAGGAACCTGGGTCCCCTAAACCTCTTCAGCCCCTCTATATGAGAGTACAAAGAACCAAGGTTGTACTGGAGTATATGTcgtttggggatgaggtagagtGATAGATAGAATTTGGAAATGGTTTGTTTTATACAGTGTGTGTTTCAGGTATAATTTCATAGCTGGATGGAAGCATGATGTAAATTGTATCTGTTAAAAATCCAATGAGTTTATGAGATGCATTTACATTTACCAGGGGAGGCTGGTgtaaggagctataggaggacgggctaattgcaatggaatggaatcaatggaaaggAGTCAACaaggtttccatatgtttgatgtgtttgatactgttcAATTTATTCCATTCCACCCAATACAATGACCCTGTCCTCCCACAAGCCTCCACTGACATGTACCTAACCAGCTCTATGGTATAGCACTATCAATTCATGTTTATGCCATTGCGTTCAGGTGTTTGCTTTGTGGTTTGAATATTGACATTTTATTTGCATTAAACATACAAATAAATAGATAAACACAAAACCTTGGTCTGTGCTTATAACATCAGAATGTGATATGTTTGTCATATTGTCACATAATAGGTTATGAATGTAGAAAAACCAGACTAACGTATCTAAAACAAGTGTCAGTATCCTAATGGGGGTAGATACCCAGGGGCTTCATGACTTAACACGAGGGGTTAACTGCACAATGATGTTACCGTTGGCCCATCTATAAATACTGTGGTCATGCATCCACAGCTGTGACACTGTCTGCagtccaaatgtcaccctattccctatatagtgcactacttctgaccagggcccatgggctctagtaaaaagtagtgcactatgtagggaataaggtgccatttgggacgtatctaTTGTGGCATGGGTATGGGAGCAATGTAGAGGAGGGatgtgggaggaggggggggggggacacacaggGTGACACTGGAGAGTGTGACACTGTGGGAGAACAACTATGTGTGACATTGAGTGAGATGACTGACGTGGAGGTGGGCCGCAAGACAGCGTGGCAGGTGGGTGTGGCCAGGGAGGACGTCCACAGGGGGGAGACTCCAACGGGACCAGTAACGGTCTCTGGACTACCCCTGAAGGGAGGGGCCATCTTGGCCTGTACACCGTTACATTTACAGAGACCAAGGCTTCCTCAGTGAGCGCGGCCATTAGTATGATATCTTACACTATGCACGGTGTGCCAGATAGACAGCTAGGAGAAAAGTGCTCCACGAAATGAGATCGTAAAATCTAAGTGCACACACGTtatggcctgcctgcctgcctacctgcctgcctgcctgcctgcctacctgcctgcctgcctgtccgaaTAACATTATGACAAATTCAAAGCTTTGGAAAAGTACAGAATCAATGACAAGGAAAGGACACTAGATATTTTTCTCATTATCTTTTGTTTATTCTTCGTATATTTTTTTAGACATGAAATAAAGAAAATAACACCTTTCCTTTACAAAACGCCTGTGTGTCGTGTTGTGaaaaaagggaggagggagatcaACAGACTACAGAGCGCTACACACTCCATCACAGCCGAAGGAGTAAACAGACAGAATCAGAATCAGGGCAGAGAGAGATCACTCACATAGTGCAAGGAACGCCAATGAGAACACTGGAGTGAATTTGAGGGGGGTGTCTGTCCCAGCCAGGgagggaattgaacccacaaccttctggtCCCAAGACCCAGACACTAACCAACCATTCCAAATAGAGTTGACTCACTAGGAGGTGGGTTTGTTACATTACCCCCTCTTTTGGGAAGCGCTATAATACAGTAGTGGTATAAAACATGTCAAATTCATCCACATGCACATCTCAGTTCCACTTCAGGAGGGCTAGGTCTCAAATACTGTTTGAGGCTTTggcatccattttgaattcaaccTGCTGTTTACATACAAACAGTGCCACTGAATTCCCAAGTTGTACAACAGTTACTGTCTCACCAAGTTACACAATACACTTCAATATGTTATTCATCTCATGCTAATGCACATTCAAATAAACCCTGATAACCAAATACCAAGCAACTAGGTAATTTATCACTCTTCCAATCATGACTGAGTGTCGAAGTGCATTATATTAAACACTTCCTGTCCTGACTACAATATTCTGTATCTCctgactgtgttgtgtctctatatacagtacagtagacctataAGGTAGTCAGGTCTGCTCATAGTACTTTACCGCTGACCTACATCATATAAACCAAACGGTGCCTCTTGGAGTGTATTTATAGAATATAGGCTGACTAGCCATTGAATATTTGATTTCATATTTGAGGCACTAAATCAAAGATGAGAGTCATCTGGTGTAGAGCACCTCAGAGGTGCAGGTTTGTGTGATGTTAACCACATACTGAGTCTGGACAAACACAGATAGTTTTCTAAACAAATGTTAGATGATAAGCAGATCATTGAGGACAATCATTTCTAAGCATGGATATGTGACGTCGACATACAGCTGAAGTTGTGATTTTATTTTCTCATTGCACACACATAGGCTAGAGGCTTATACCTAGACACAGATACAAAATGATGTGTcatacgcacgcatgcacacaataCGGGCACGCACAACACACTCACTCAGGTAcgatcacacacgcacacacacgcacacacattaggATGAAGATAACATTATGACTGATcaatcctccacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149363 lncRNA downstream 7313 28310319 ~ 28310732 (-) True G129582
TU149352 lncRNA downstream 26794 28290531 ~ 28291251 (-) True G129572
TU149326 lncRNA downstream 85647 28230607 ~ 28232398 (-) True G129547
TU149282 lncRNA downstream 126502 28191336 ~ 28191543 (-) True G129507
TU149234 lncRNA downstream 146728 28170013 ~ 28171317 (-) True G129459
TU149370 lncRNA upstream 2499 28331695 ~ 28334476 (-) True G129588
TU149421 lncRNA upstream 106770 28435966 ~ 28450726 (-) False G129631
TU149422 lncRNA upstream 106770 28435966 ~ 28450726 (-) False G129631
TU149423 lncRNA upstream 106770 28435966 ~ 28450726 (-) False G129631
TU149418 lncRNA upstream 112150 28441346 ~ 28450726 (-) False G129631
XM_021556854.2 mRNA downstream 52579 28252625 ~ 28265466 (-) True LOC110485712
XM_021556843.2 mRNA downstream 153190 28152489 ~ 28164855 (-) True LOC110485705
XM_036944152.1 mRNA downstream 168070 27933389 ~ 28149975 (-) False LOC110485663
XM_036944163.1 mRNA downstream 168071 27933389 ~ 28149974 (-) False LOC110485663
XM_021556924.2 mRNA upstream 27203 28356399 ~ 28373544 (-) True LOC110485762
XM_036933542.1 mRNA upstream 48622 28377818 ~ 28395837 (-) False g6f-like-a
XM_036933548.1 mRNA upstream 48622 28377818 ~ 28401529 (-) False g6f-like-a
NM_001195274.1 mRNA upstream 48916 28378112 ~ 28395766 (-) True g6f-like-a
XR_002467991.2 mRNA upstream 140513 28469709 ~ 28471494 (-) False LOC110485830
TU149362 other downstream 7313 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 168059 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 551513 27766157 ~ 27766532 (-) True G129250
TU147564 other downstream 1039921 27271260 ~ 27278124 (-) True LOC110485245
TU146643 other downstream 1655031 26651376 ~ 26663014 (-) True LOC110539285
TU149442 other upstream 147990 28477186 ~ 28477831 (-) True LOC110534614
TU150630 other upstream 1539850 29869046 ~ 29878568 (-) True LOC110486376
TU151687 other upstream 2560497 30889693 ~ 30895983 (-) True c2h8orf37
TU151689 other upstream 2567830 30897026 ~ 30899564 (-) True trnae-cuc
TU152152 other upstream 2863223 31192419 ~ 31195186 (-) False LOC110486852

Expression Profile