RNA id: XM_036944357.1


Basic Information

Item Value
RNA id XM_036944357.1
length 4523
RNA type mRNA
GC content 0.53
exon number 30
gene id vars1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28338839 ~ 28356242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAATCTGTCCAAAGGTCCTTCGAACCAAACATGTGCGCCACATTGCATCAGACTGCCGACTACTGTAATACGCTGCTTATCCGGAACTCATGAGTTGACGTCCCTTTCTTCTTCATTCAACGggaTGGCTTTGCTCTACGTCTCCCCCCACCCTGACGACTTCAGGAGCCTCATGGCCCTGGTCGCTGCAGAGTTCTGCCCCTCTCGGCTCTGCACACTCATAGAAGACCCTCCTGCCTCCCTGGCCCTGTGCTCTCGCCCCAGCCTGGTGCTGGGCTCTGGGGGAGGTGAGGTGCTCTCTGGGGCCAGTGCTGTTGCATGGTACCTAGCCTctcaggggaagaggatagggtcGAATGCTAAACAGGAGAGCCAGGTGTGGCAGTGGCTCAGCTTTGCAGACAATGAGCTGATTCCTGTGTCCTGTGCTGTGGTGTTCCCACTGCTGGGGGTGATGGGAGTGGATAAGAAGTCCATGCAGCTTCAGCAGAGTTCTCATGCTGAGATGATGCGCGTGCTAAACGTTCTAGATAAGAACCTGGAGCCTAGAACATTCCTGGTGGGAGACAGCCTCACTCTGGCTGACATCGCTGTGGCAACCGCAGCACTCCTGCCCTTCAAATACGCCTTGGAGCCGTCCAACAGGAAAGCCCTGACGAACGTGACCAGGTGGTTTCTGACCTGTGTCAACCAGCCTCAGTTTGTCAAGGTCCTGGGACAGATCTCTCTGTGTGAGAAGATGGTGCCCGTCACACCCAAACCCAGCGTTGCTCCTGTTCCTGCTGCTAACGCTAATCCAACTGCTGATTCCAATGCTACCAATGgcaaaCCAAAGACAGAAGCTCAGCTGAAGAAGGAGGCTAAAAGCAGAGAGAAGTTGGAGAAGTTCCAACagaagaaggagatggaggagaagaaaaaGCAAGAAAAGAAACTGGCACCCCCGACAGAGAAAAAGGCCAAACCAGAGAAGAAGGACCTGGGAGTGATCTCATACGACGTCCCCACCCCTCCTGGAGAGAAAAAAGATGTCCTGAGCCCCCTGCCAGACTCGTACAGTCCTCAGTATGTGGAGGCAGCCTGGTACTCCTGGTGGGAGAAGCAGGGATACTTCAAACCTGAGTATGGGCGGAAGAGTATCAGTGAGCCTAACCCCCGTGGAGTGTTCATGATGTGTATCCCTCCGCCCAATGTGACGGGATCTCTTCACTTAGGTCATGCCCTAACCAACGCCATCCAGGACTGTCTGACCAGATGgcACCGTATGCGTGGCGAGACGACCCTGTGGAACCCAGGCTGTGACCACGCGGGCATCGCCACCCAGGTGGTGGTGGAGAAAAAACTGATGAGGGAGAGGGGCTTGAGCCGTCACGACCTGGGGAGAGACCAGTTCATCCAAGAGGTCTGGAAGTGGAAGAACGAGAAGGGAGACCGTATCTACCACCAGCTGAAGAAGCTGGGTTCCTCCCTGGACTGGGACAGAGCCTGCTTTACCATGGACCCTAAACTGTCCTATGCAGTCCAGGAGGCGTTCATTCGTCTGCATGAGGACGGCGTGATCTACAGGAGCAAGAGGCTGGTCAACTGGTCATGCACCCTCAACTCTGCCATCTCGGATATAGAGGTGGATAAGAAGGAGCTGACTGGCAGGACTCTGCTGCCCGTGCCTGGCTACAAGGACAAGGTGGAGTTTGGAGTACTGGTCTCCTTCTCCTACAATATAGAGGGATCAGATGAGGAGGTGATTGTGGCGACCACTCGTATAGAGACCATGCTGGGAGATTCTGCTGTGGCCGTCCACCCTGCCGACCCCAGATACCAGCACCTTAAAGGGAAGATGGTGCTTCATCCCTTCTGTGACAGGAAGATGCCCATCGTGTTTGATGAGTTCGTGGACGTCAACTTTGGAACAGGTGCTGTGAAGATCACCCCAGCCCATGACCATAATGATTATGAGGTTGGAAACAGACACCACCTGGCCTTCATCAACATCCTGGATGAGAATGGCCTGCTCATCAACGTGCCAGCTCCATTCCTGgGTATGAAACGGTTCGAAGCGAGGAAGGCTGTGCTGCAGGCTCTGAAGGACAGAGGCCATTTCaaggagaccaaagataaccccatGGTGGTGCCTGTCTGCAGTCGTTCTAAGGACATAGTGGAGCCCCTGTTGAAGCCTCAGTGGTATGTGGACTGTGCTGACATGGGCAAGCAGGCAGCTGACTCGGTCCGGGAGGGAAGACTCAAAATCATCCCAGACCACCACCATAAGACCTGGTTCAACTGGTTGGACAACATCAGggACTGGTGTATCTCTCGTCAGCTGTGGTGGGGTCACAGGATCCCAGCCTACTTTGTCACCGTGACTGACCCTTCAGTCACACCAGGAGAGGACATGGATGGTCATTACTGGGTGagtgggaggacagaggaggaggccAGAGATAAAGCTGCCAAGCGCTTCAACGTCTCCACTGACAAGGTCACCCTCCGACAGGATGAGGATGTCCTGGATACATGGTTCTCCTCTGGTATTTTCCCCTTCTCCATCTTCGGCTGGCCCAATGAGacCCAGGACCTGAGTGTGTTCTATCCAGGCACCCTGCTGGAGACAGGTCATGACATCCTGTTCTTCTGGGTGGCCCGCATGGTGATGATGGGCCTCAAACTCACTGGCAAGCTGCCCTTCAAAGAGGTGTACCTCCATGCGGTGGTGAGGGACGCCCACGGGAGGAAGATGAGCAAATCTCTGGGGAACGTCATCGACCCCCTGGACGTCATCACAGGCATCTCTCTGGAGGGTCTGTATGCCCAGCTGCAGGACAGTAATCTGGACCCAGTAGAGGTAGAGAAGGCCAAGCAGGGACAGAAGTCGGACTACCCCACTGGTATCCCAGAGTGTGGCACAGATGCCCTCCGCTTCGCCCTGTGTGCCTACACCAGCCAAGGCAGGGACATTAACATGGATGTGAATCGTATCCTTGGTTACCGTCACTTCTGTAACAAGCTGTGGAATGCTGTGAAGTTTGCCATGAGGACGCTGGGAGACAACTTTGTTCCTTCAGAGAAAGCCCAGCTGTGTGGGGAGGAGAGCGTGTCAGACCGGTGGATTCTGTCCCGTTTGTGTACTGCTGTGGGTCTGTGTAATGCAGGGTTCCAGGCCTACGACTTCCCAGCTATCACCACAGCCATCTACAACTTCTGGCTCTACGAGCTCTGTGACGTCTATCTGGAGAGTGTGAAGCCAGTGTTCTCCAGGGCGGAGGAGGACAGTGGGTCTCAGAGCCAGGCTGTAGTCTGCAGACAGACGCTGTTCACCTGCCTGGAGACCGGCCTGCTCCTCCTAGCTCCCATCATGCCCTTCGTGGGCGAGGAGCTCTACCAGAGGTTGCCACGGCGACGATCCCAGGATGGCCACCCTAGTATCCATGTCACGCCCTACCCTGAGACTGAGGAGTTCTGCTGGCATAGTGAGGACGTGGACCGTCAGATGGAGTTTGTGATGACCGTGGTCCGGACCATCCGTTCACTCAGGGCCGACTACAACCTGACCAAGACACGTGCCGATTGCTACCTCCAGTGTATAGACAATGAGACGATGTCTCTGGTGGGGCAGTACAGTCTGCAGATCCAGACCCTGTCTCTATCCCAGACCATCCAGCCAGTCCCAGCCACCGGGGCCGTCCCAGAGGGCTGTGCTGTGGCCATTGCCTCCGACAGGTGCACCGTCCACCTCATGCTCAAGGGTCTGATAGATTTGGAGAAGGAGGTGGCCAAGCTGACTGTGAAGAAGGGAGAGCTGGAGAAACAGATGGATAAACTGAGAGAAAAGATGGAGAAGAGTGACTACAAGGAGAAGGTGCCTGTTAAAGTACAGGATCTGGACGCTGAGAAGCTGCGTCAGAGCCAGACGGAGCTGGAGAAAGCAACGGAAGCCATAGACAACTTCAAGAGAATGGTGTAACCACTCCTCTCCGTCCCCTTTTACAACATGGTTCTTATCATAGTGAGCTCAAAGTATTGTCAGTGACTtgttttggatttgaaatgatacaatgacagaggttaaagtgcagacttaaatttaatttgagggtattttcatccatattgggtgaacaTTTCTACATAAATATCATTCATACACCCAAGACATGGGGGAGTTTTGTGCCTGTAACTGTCGATTATCcgcaatcatggtagcatccatattaatatagaaatgtttagaaacattctattcacaataagtgactccaaaatgaagCAATGAATGCTATTAATTTCTAATTGGGCACTAAATGTTCTGAAACAACCAGCAAATCCTGGAAAGACTATGTACAAACATTTCACCCGATCTGAATGAAAATACCCTGAagttaaagctgacagtctgcactttaacccaAAACAatttcactgtcccaatacattGAGCTGTATTTCACCCGCCTGTCATTGTCTCATGTCAGTACTATGCCACTTTCCATAAAGGATGCTCTGGAGTAAAGACCTTATATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148261 lncRNA upstream 33842 28304484 ~ 28304997 (+) True G128546
TU148246 lncRNA upstream 73385 28264194 ~ 28265454 (+) True G128531
TU148195 lncRNA upstream 88078 28247437 ~ 28250761 (+) True ddr1
TU148171 lncRNA upstream 157838 28180682 ~ 28181001 (+) True G128474
TU148168 lncRNA upstream 167519 28170574 ~ 28171320 (+) True LOC110485682
TU148276 lncRNA downstream 23540 28379782 ~ 28380102 (+) True G128561
TU148400 lncRNA downstream 212074 28568316 ~ 28600609 (+) True G128679
TU148373 lncRNA downstream 243045 28599287 ~ 28644026 (+) True G128652
TU148440 lncRNA downstream 277354 28633596 ~ 28634986 (+) True G128719
TU148361 lncRNA downstream 332011 28688253 ~ 28689570 (+) True G128640
XM_021556914.2 mRNA upstream 189 28335510 ~ 28338650 (+) True LOC110485753
XM_021556935.2 mRNA upstream 4225 28331733 ~ 28334614 (+) False ino80e
XM_021556951.2 mRNA upstream 4225 28331733 ~ 28334614 (+) True ino80e
XM_036944308.1 mRNA upstream 20022 28297471 ~ 28318817 (+) False si:dkeyp-77h1.4
XM_036944382.1 mRNA downstream 43373 28399615 ~ 28450760 (+) False si:ch73-22o12.1
XM_021557008.2 mRNA downstream 43916 28400158 ~ 28450760 (+) False si:ch73-22o12.1
XM_021557018.2 mRNA downstream 43921 28400163 ~ 28469748 (+) True si:ch73-22o12.1
XR_002468004.2 mRNA downstream 181291 28537533 ~ 28681607 (+) False LOC110485836
XM_021557031.2 mRNA downstream 181293 28537535 ~ 28687330 (+) False LOC110485836
TU148132 other upstream 249394 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 621676 27716482 ~ 27717163 (+) True G128185
TU147350 other upstream 1035284 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 1148246 27189991 ~ 27190593 (+) True G127644
TU147247 other upstream 1178194 27148176 ~ 27160645 (+) True LOC110485212
TU148570 other downstream 575814 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 583657 28939899 ~ 28981288 (+) True G128853
TU148818 other downstream 1121375 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 1128391 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 1243784 29600026 ~ 29641096 (+) True G130308

Expression Profile