RNA id: XM_021557018.2


Basic Information

Item Value
RNA id XM_021557018.2
length 3039
RNA type mRNA
GC content 0.48
exon number 10
gene id si:ch73-22o12.1
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28399615 ~ 28469748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATATCGTTTGATTTCAAGGAACTGTGACGTTGCCTAGGGATAGTCTATGACATCACAACCAGTCACCCAGTAGAGATCTCTCCGCAGTGTGGAAATAGTTGGTAGAGCACACGCAATCCAAACCACCTTTTTAGCTACCAGAGCAATATACATTTGTGAGTTTCTTGTCAGCATCGCTTGGACCAATTGGATAGGATTTTTGTATTCATTTTAACGGGCTCCGACAGAAGCGCAGTCAGTGAAGGACGTTTGAAAACTAACGGTTTGAATTATTGACTTGTGATTAGTTCAGGATTAAGTTCAAACCGGGAAAAGACACGGATATAGGTTTTGTTTTACCAACGATATAAAATTCATTTTAATCAGCACAGACAGCATGGCGAGAGAGGACGCTCGGAATAGGCATGACTTCACAAAAATCATCGGACTGTTCAGCGTGGTCACGTTGCTGACTTTTCAAGgggCATTGTCTCAGCAGGTGAAGGTGGAACCGGAAGTGATGTCCTACCCCAGCCAGGCGGTCAACCTGAGGTGTGCCTTCGCAGACGCTGGAGGGATACAGCTCACACAGGTGTCCTGGATCTATGAGCCGAAGGAGGGCGAGCGGCTCAACATCGCCGTGTACCACCCTAAATTTGGGGCAAGTTTCCCCACATCGCCCCTGAAGGGGCGGGTCCGCTTCACGACGGAGCCCCCCTCCCTCAGCAACCCCTCCATCCAGATCTCAGACGTCAAGATGACTGACGAGGGGAAATACATCTGTGAATACGCCACCTACCCCAGCGGCAACGAACAGGGTGTCACCTCCCTCGTCATGCTAGCCAAACCCAGGAACTCTGCCTCCGGGGTAACAGTGATAGCCTCCACTGTCGCCGCGGGAGCCAAGCCAGTTGTTGTGGCCCGCTGTGAGTCGGCCGATGGTCGCCCTGCTGCCCAGATCGCATGGGTGACAGCTGTCAACGGCAACGCTACCTCCGCCTCTACGGCGGGCGCTGACAACACCGTGACGGTATCCAGCCAGTACATGCTGGTTCCCACAGCAGCAGACAACGGCAAAGACATCAGCTGTTTGGTGTCCCATCGAACCCAGGCCAAGCCTGAGAGCTTCCTGATGAAACTGGCCATCGAATacccCCCACAGGTGACCATCGTGGGCTATGATAATAACTGGTACATGGGTCGGACCAACGTGGCTCTGACCTGTCGGGCTACTGCCAACCCCATTCCTACCACCATCACATGGAAAACtATGTCCGGTCAGATGCCAGACACAGTGCAGGTAAAAGAAAACGTGCTGACCGTGCTGAAGGTGGATGAGCAGGCCAACACAACCTTCGTCTGCGAGGTCAAGAACCGCCTGGGCACCGGCAAGGACCAGGTCACTGTTATGGTCAGAGgtacTCGACTGCCAGTGAAGGGTCCCACTACAAGCGGTGTTATAGGAGGGCTCATTGGGGTGGTTCTGCTGCTGGCCATTATCGGCAGTGTTGTGGTCTTGGTCCGCAAAAAACGCAACCAGCACAATGgagaTGGTCCACCCAAGTACAAGCCCCCTCCCCCTAACAAGCAGCAGACCACCACCAGCAGCTCTTCTGATACGCTGAACACCAGTCGAGACCCTGTGGAGAGAAAGCACGGATCCGTGGACCACCTGTACTACGCTCCGCAGGATGCCGAGCCCAGCACAGACCTGGATGCATGCAGTGATGAGGAATACAATTGTGATGCGGAGGAGTTGCGCTACGCTGGCGCCCCTTCTGGCTGGGATGAACCCAGGCTGAACGAAGTCCCGCACCTGTACGCCCCCAACCAGTACAAGCCCAATGATTACCATGACAACGAGGAGGACCACCCCCCTGCCGCCGGAGCGACTCGTGGAGAGAGCTTTGTGTCCCCGGCCATGTTTGTGTGAAGACATTGGGAGATGGGAGACATTGGAAGTGTGTGTGGGACTAAACCTGTTTGTACGTGAAGAACATCGGACactggatgtgtgtgtctgtgggataGCTGCGGTGTGTGATGGTTGTAGTCATTGCCGTTCAATCAGTATCTCCAATCTAGAATTTTACATTGTGAACTAAAGTGAGTGTATGTATTGGGTTCTAATAACGGGAATCATGTTTTTAAAAGGGGGATCTGCTTTACCGTTAAAATGCTGTGTAAGTAAGAACAACATAAAAGAACACTAACTTTTATCTCGGTTGGTTGAAACTCCTTTGAATGTTGTGGTTAAAGTCccatgtgtacagtaagtgtgtgAGATTGTTTAATAGGCACAGATCCAGGGCCAGCTTACCCTCTTTGAATCTTAACCATTACCATTAGGGGATAAAGCAACACTGACCTTTGGAATGTAGATGGGCTCTGGGGTCAGGAGACTGGTACATTACTCTGAGCTAAAGGCAGTAGGATGATGTTGCCTATAGACACTGGTGTAAGGTCAGTTGTGTGTTTTACTACCTAAGGATTATGTTTAAGGTTTTACATAatgtaatctgatcctagatctgtgtctaaGATACAATTCTGGATTCCTGGAGCCCAATACAAGCCATAAGAGAGGGATAATCAATTGCCTGAACAAAAATCTAACAATGTAAGTTACTGACAATTTTGTATATATAAAAAGGAAATCTCTGTTACCTTTTAACATTGACGTGTCTAAACATTGATGATTTGTGCCTGTTTGCTCAGGATTTAAAAGCTCTATTCACATGCTCTACCACAGTATGTTGGTTACAGAATGTATTACGTAGGCCTGCTGTTGAAATGTCCAATATTGTCAGGGTCTAGGTTTTTATACAATTTCAGGGTCTTCTTCTCTATACAATCACTTAATTGTTAAACCAGATGTGCCTATTTTGTAGCATGTCAGATTATAAAATGTGAATCAAACAGAATTCTGAATGATTTTGTCATGCTTTGTAACAGATGGAATTGACCTGTTTTTACTGCGCTATGTATGTTTTTAATAAAGCAAAGCCTGATGCGCTGGTTACTTGATGATTTTTAATTCATTAAACATTTAAACTGTG

Function

GO: NA

KEGG:

id description
K06531 PVRL2, CD112; poliovirus receptor-related protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148264 lncRNA upstream 17239 28311826 ~ 28382924 (+) True G128549
TU148276 lncRNA upstream 20061 28379782 ~ 28380102 (+) True G128561
TU148261 lncRNA upstream 95166 28304484 ~ 28304997 (+) True G128546
TU148246 lncRNA upstream 134709 28264194 ~ 28265454 (+) True G128531
TU148195 lncRNA upstream 149402 28247437 ~ 28250761 (+) True ddr1
TU148400 lncRNA downstream 98568 28568316 ~ 28600609 (+) True G128679
TU148373 lncRNA downstream 129539 28599287 ~ 28644026 (+) True G128652
TU148440 lncRNA downstream 163848 28633596 ~ 28634986 (+) True G128719
TU148361 lncRNA downstream 218505 28688253 ~ 28689570 (+) True G128640
TU148462 lncRNA downstream 220347 28690095 ~ 28690399 (+) True G128741
XM_036944357.1 mRNA upstream 43921 28338839 ~ 28356242 (+) False vars1
XM_036944361.1 mRNA upstream 43921 28338839 ~ 28356242 (+) True vars1
XM_021556914.2 mRNA upstream 61513 28335510 ~ 28338650 (+) True LOC110485753
XM_021556935.2 mRNA upstream 65549 28331733 ~ 28334614 (+) False ino80e
XR_002468004.2 mRNA downstream 67785 28537533 ~ 28681607 (+) False LOC110485836
XM_021557031.2 mRNA downstream 67787 28537535 ~ 28687330 (+) False LOC110485836
XM_021557045.2 mRNA downstream 67787 28537535 ~ 28687330 (+) False LOC110485836
XM_021557037.2 mRNA downstream 113995 28583743 ~ 28687330 (+) False LOC110485836
XM_021557053.2 mRNA downstream 132907 28602655 ~ 28687330 (+) True LOC110485836
TU148132 other upstream 310718 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 683000 27716482 ~ 27717163 (+) True G128185
TU147350 other upstream 1096608 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 1209570 27189991 ~ 27190593 (+) True G127644
TU147247 other upstream 1239518 27148176 ~ 27160645 (+) True LOC110485212
TU148570 other downstream 462308 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 470151 28939899 ~ 28981288 (+) True G128853
TU148818 other downstream 1007869 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 1014885 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 1130278 29600026 ~ 29641096 (+) True G130308

Expression Profile