RNA id: TU149424


Basic Information

Item Value
RNA id TU149424
length 1911
lncRNA type read_through
GC content 0.41
exon number 3
gene id LOC110485830
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28468401 ~ 28471494 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCTTATCAACAACAGGCGATGTTTTGTTTTAGCAAAGATATTAACGATAGCTAGCAAGCAGGCTATCAAAGGAATATTAGCTAGCTGATGAGATCAAATGGCTGACAAACGTGGTTTGGAGAAACTGGACTTTGGTGCATTAAGCATCGAGCAACAGCAGCAACTCCGACAATTTaagATTACTTCACCGACCCAAACCTTGGTTTGATCATTGGCTCCAAACTGCAGAGCGATCCTGCCGACACAGGCACAGACTGAATCCTTACCGGATTGCTTGGCAGTTCAACTGTTATTGAAGTGTAAAGCTGTAACAGGCCTCTTTCTCTGTATTGACTAGTTATGTGTCAAAGTAACAATATAGAAATataaaacattatataaagtgggtATGTACTGGCACCCAGGCAGATGTTCTTACTGAGCATCATTACAACAGGTTAGTTACAGGGCTACAGAAGGATGTTTTATACCGCTGGTTGATTGGAAAATATAGATTTCTAGGCCTATAGGGTGGAGTGGACAGCCTCTTTACAGGAGTTCTCAGGGAAAAGTCTAAATGGGATCATTGGGACGTCCCAACTCTGACGTTAAGCCATCGATGTTGAAATATAAAACGGTTAAGGTTACCGATGTCCCAAGGATTCCGGATAGCACTAACCTTTTCCTCAAGCCTCAAGAGTTCCCCCTTCTGGACTCTTATGTACTTCCACTAACTCCCCAACTcatcagatgaaacaaaaaacaTTAAGCAAGATGAGACAATGTGACCGCAGCAATACTGACCATAACTTTAGAAAGATCTGACCACACTGGATACACAGTTTAAATGTTTAATGAATTAAAAATCATCAAGTAACCAGCGCATCAGGCTTTGCTTTATTAAAAACATACATAGCGCAGTAAAAACAGGTCAATTCCATCTGTTACAAAGCATGACAAAATCATTCAGAATTCTGTTTGATTCACATTTTATAATCTGACATGCTACAAAATAGGCACATCTGGTTTAACAATTAAGTGATTGTATAGAGAAGAAGACCCTGAAATTGTATAAAAACCTAGACCCTGACAATATTGGACATTTCAACAGCAGGCCTACGTAATACATTCTGTAACCAACATACTGTGGTAGAGCATGTGAATAGAGCTTTTAAATCCTGAGCAAACAGGCACAAATCATCAATGTTTAGACACGTCAATGTTAAAAGGTAACAGAGATTTCCTTTTTATATATACAAAATTGTCAGTAACTTACATTGTTAGATTTTTGTTCAGGCAATTGATTATCCCTCTCTTATGGCTTGTATTGGGCTCCAGGAATCCAGAATTGTATCttagacacacttactgtacacatggGACTTTAACCACAACATTCAAAGGAGTTTCAACCAACCGAGATAAAAGTTAGTGTTCTTTTATGTTGTTCTTACTTACACAGCATTTTAACGGTAAAGCAGATCCCCCTTTTAAAAACATGATTCCCGTTATTAGAACCCAATACATACACTCACTTTAGTTCACAATGTAAAATTCTAGATTGGAGATACTGATTGAACGGCAATGACTACAACCATCACACACCGCAGCtatcccacagacacacacatccagtGTCCGATGTTCTTCACGTACAAACAGGTTTAGTCCCACACACACTTCCAATGTCTCCCATCTCCCAATGTCTTCACACAAACATGGCCGGGGACACAAAGCTCTCTCCACGAGTCGCTCCGGCGGCAGGGGGGTGGTCCTCCTCGTTGTCATGGTAATCATTGGGCTTGTACTGGTTGGGGGCGTACAGGTGCGGGACTTCGTTCAGCCTGGGTTCATCCCAGCCAGAAGGGGCGCCAGCGTAGCGCAACTCCTCCGCATCACAATTGTATTCCTCATCACTGCATGCATCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149421 lncRNA downstream 17675 28435966 ~ 28450726 (-) False G129631
TU149422 lncRNA downstream 17675 28435966 ~ 28450726 (-) False G129631
TU149423 lncRNA downstream 17675 28435966 ~ 28450726 (-) False G129631
TU149418 lncRNA downstream 17675 28441346 ~ 28450726 (-) False G129631
TU149415 lncRNA downstream 17675 28445903 ~ 28450726 (-) False G129631
TU149443 lncRNA upstream 4655 28475960 ~ 28476606 (-) False LOC110534614
TU149576 lncRNA upstream 204720 28676025 ~ 28677493 (-) True G129773
TU149581 lncRNA upstream 213069 28684374 ~ 28687320 (-) False G129776
TU149583 lncRNA upstream 213069 28684374 ~ 28687610 (-) True G129776
TU149587 lncRNA upstream 217879 28689184 ~ 28689650 (-) True G129777
XM_036933548.1 mRNA downstream 66872 28377818 ~ 28401529 (-) False g6f-like-a
XM_036933542.1 mRNA downstream 72564 28377818 ~ 28395837 (-) False g6f-like-a
NM_001195274.1 mRNA downstream 72635 28378112 ~ 28395766 (-) True g6f-like-a
XM_021556924.2 mRNA downstream 94857 28356399 ~ 28373544 (-) True LOC110485762
XM_036944347.1 mRNA downstream 139205 28318045 ~ 28329196 (-) True LOC110485793
XM_036933650.1 mRNA upstream 4518 28475823 ~ 28533709 (-) False LOC110534614
XM_021557072.2 mRNA upstream 232378 28703683 ~ 28706157 (-) True LOC110485869
XM_021557083.2 mRNA upstream 235558 28706863 ~ 28714039 (-) True LOC110485879
XM_021557096.2 mRNA upstream 244087 28715392 ~ 28718511 (-) True LOC110485888
XM_021557276.2 mRNA upstream 506524 28977829 ~ 29007911 (-) False LOC110485998
TU149362 other downstream 157669 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 318415 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 701869 27766157 ~ 27766532 (-) True G129250
TU147564 other downstream 1190277 27271260 ~ 27278124 (-) True LOC110485245
TU146643 other downstream 1805387 26651376 ~ 26663014 (-) True LOC110539285
TU149442 other upstream 5881 28477186 ~ 28477831 (-) True LOC110534614
TU150630 other upstream 1397741 29869046 ~ 29878568 (-) True LOC110486376
TU151687 other upstream 2418388 30889693 ~ 30895983 (-) True c2h8orf37
TU151689 other upstream 2425721 30897026 ~ 30899564 (-) True trnae-cuc
TU152152 other upstream 2721114 31192419 ~ 31195186 (-) False LOC110486852

Expression Profile