RNA id: XM_021557096.2


Basic Information

Item Value
RNA id XM_021557096.2
length 1559
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110485888
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28715392 ~ 28718511 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATAAGTTCACAGTACCTCCTTCTAAGGGAGGTGAAGGAAACTGCAGCAGCAGTACTATAGGCTATTGTACAACAGGATAATACACACATCTTCAAGAGACTCAGAGAAGAAACACCAAagagctaattgatcattaatcATGCCTGACAAGGATATGGagccaacaacagaatataactATTCCTCCTACTACGATGATACAGAAGGTTTATATAGTTCAGAGCCCTGCAACAATGCCAATGTGAAGGAGTTTGGACGGGTGTTTCTGCCTACACTCTACAGCCTGGTCTTCATTGTGGGCTTCATCGGTAACGGCCTGGTGGTCTGTGTCCTGGTGGTGTTTAAGAGGATCAGAAGCATGACAGACCTCTGTCTCTTCAACCTGGCTCTGTCTGACCTTTTCTTCATCATCTCCCTGCCTTTCTGGTCCCACTACGCCACCGCAGCCAAGTGGCTCCTGGGGGACTTTATGTGCCGACTGGTAACCGGACTATACATGCTTGGGTTTTATGGCAGCATCTTCTTCATGGTGATCTTGACAGTGGATCGCTATGTGGTCATAGTCCACGCTCACACCCTGGCCAGGCCCAGATCAGTCAGAGTAGGGGTCACTCTGTCTCTGTTCATGTGGGCTCTCAGTCTCTGTGCCTCTCTGCCTACAATCATCTTCACCAAAGTAAATAATGAGTCTGGGCTTACAACATGTAAACCAGAGTATCCAGACGGTAGCATGTGGCGCCAGGTTTCTTATTTAGAGATGAATGTCTTGggtctacttctccctctctccgtcatgGTGATCTGCTATTCCAGAATCGTTCCGATGTTAGTCAATATCAAAACCACCAAAAAGCACAAAGCCATCAAACTGATAATCATCATAGTAGTGGTCTTTTTCTGCTTTTGGACCCCATACAATGTGGTCATTCTCCTGCGTTATCTGGAGACCCAGAGCTATTTTGGGGACTGTACGACTCACACGAACATAGATCTGGCAATGCAGTGGACAGAGGTGATAGCGTTCACACACTGTTGTTTGAATCCGATCATCTATGCCTTTGCAGGGCAGAAATTCATGAGTCTTGTCCTGAAGTTACTAAGAAAATGGATGCCAATGTGCTTCGCCAGGCCTTATGTTAGTGGGTTGTCTGAAAGAAATATCTCAGTCTATTCCAGGTCTTCTGAAATATCATCTACAAGACTGCTGTAGTTTGACTTGTATGCAGGCACACTTCGAATATAAAACTCTGAGAAGGGAAAAGACAGTAAAAGATGTAAGGAAAAGGGGGATTTCTTTGAAAGTGTGGCACTCAGTCACCCTAACTGTGAATCTATGCTTAcattagatactgtagatatcaGTTGCTCTTTTGTATCTTTACATGCTCCAATTCCTTTGTTGATAGATACCTTTAAAGAGTGTTAGTTGTGTCCTCATGTGGTATTGTGTGAAGTGCGAAAAAAAGTAAAGAAATTgacagtatgtacagtgcattcggaaagtattcagaccccttcccttttcccaaatgttgttacgttacagtcttattctaaa

Function

GO: NA

KEGG:

id description
K04179 CCR4, CD194; C-C chemokine receptor type 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149594 lncRNA downstream 19391 28695765 ~ 28696001 (-) True G129784
TU149588 lncRNA downstream 25313 28689778 ~ 28690079 (-) True G129778
TU149587 lncRNA downstream 25742 28689184 ~ 28689650 (-) True G129777
TU149583 lncRNA downstream 27782 28684374 ~ 28687610 (-) True G129776
TU149581 lncRNA downstream 28072 28684374 ~ 28687320 (-) False G129776
TU149609 lncRNA upstream 2696 28721207 ~ 28721896 (-) True G129799
TU149712 lncRNA upstream 136670 28855181 ~ 28860491 (-) True G129894
TU149716 lncRNA upstream 142323 28860834 ~ 28865315 (-) False G129896
TU149717 lncRNA upstream 142323 28860834 ~ 28865255 (-) False G129896
TU149718 lncRNA upstream 142323 28860834 ~ 28865159 (-) False G129896
XM_021557083.2 mRNA downstream 1353 28706863 ~ 28714039 (-) True LOC110485879
XM_021557072.2 mRNA downstream 9235 28703683 ~ 28706157 (-) True LOC110485869
XM_036933650.1 mRNA downstream 181683 28475823 ~ 28533709 (-) False LOC110534614
XR_002467991.2 mRNA downstream 243898 28469709 ~ 28471494 (-) False LOC110485830
XM_036933548.1 mRNA downstream 313863 28377818 ~ 28401529 (-) False g6f-like-a
XM_021557276.2 mRNA upstream 259318 28977829 ~ 29007911 (-) False LOC110485998
XM_021557284.2 mRNA upstream 259318 28977829 ~ 29007911 (-) True LOC110485998
trnat-ugu-28 mRNA upstream 293209 29011720 ~ 29011792 (-) True trnat-ugu-28
XM_021557357.2 mRNA upstream 368906 29087417 ~ 29090611 (-) True LOC110486042
XM_021557494.2 mRNA upstream 742433 29460944 ~ 29470038 (-) False LOC110486122
TU149442 other downstream 237561 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 404660 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 565406 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 948860 27766157 ~ 27766532 (-) True G129250
TU147564 other downstream 1437268 27271260 ~ 27278124 (-) True LOC110485245
TU150630 other upstream 1150535 29869046 ~ 29878568 (-) True LOC110486376
TU151687 other upstream 2171182 30889693 ~ 30895983 (-) True c2h8orf37
TU151689 other upstream 2178515 30897026 ~ 30899564 (-) True trnae-cuc
TU152152 other upstream 2473908 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 2473955 31192466 ~ 31195186 (-) False LOC110486852

Expression Profile