RNA id: XM_036944456.1


Basic Information

Item Value
RNA id XM_036944456.1
length 6388
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC110485894
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28719936 ~ 28780547 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGCTGGCAAGAAGTGGCAGTGAATTCCCAATGAGCATGATTGACATTTCAGTGCTGACGAAGGCGGGCTCGGACTAGAACTGGGACAACCGGCATTTACACGGATTATTTCCGAAATCGATTTGCAATTACTTGTTATGAGAATATGAATTAAAACAATGTTTGAGTCGACATATCAGTAGAGCTTTGGTGTCCTTGATGACAGATGACAGGACAAAAGGAAAATATTGAGAATAGCCAAACGTTTACCATTGAAGTTGGATATTGCCACATGCAGAGATGGATTTTGGAGAAGTCAACACAGCCACAAAACCTCCAATAGGGAAGAGGATGAAGTCCCGAGCCCCCCCTCCACCCCTGGCCCCCGAGCCCGCCCCCAGGAGAATCTTCCGTAACGCAGTGCCTGATGGGGGAGGCTCAGCGCAGGGCAGTATGGGCAGCATGGTGATGGACACCAAGGAGAACATGATGAGGACCAGCGTAGACCTCCACATCACTCTGCCTCAAGGCTACCAGACCAGCAGCACAGTGGACGGCAGCAAGGCGCTCATGGACCTGTTGGTGGATCTGTGCAGCCGGTACCACCTGAACCCAGCCTATCACACCCTGGAGCTGCAGTCCAGCGAGGGCCTGTCCCTAACCTTCAAACCCAACAGCCTGCTGGGGTCCCTGGACGTTGTTGCCATAAGCATCAGGGAGAAAGTGTTGCAGGACAAAGTGGTGCGGAAACCTCCGCCTAAAGTGCCAGAGAAAACGGTGCGTCTGGTGGTGAACTACCACAGGAGCCAGAAGGCGGTGGTGAGGGTGAGTCCCCTGGTGCCCCTAGGGAGCTTGGTGCCAGCCATCTGTGAGAAGTGTGACTTTGACCCGGCCCATGTCCTGCTGCTGAAGGACAATGTCAGCAACCATGAGCTGGAGCTAGACAAGTGTCTGAGCGAGCTAGGAATCAGAGAGCTGTACGTACTGGACCAGACTCTTGAATACTTCCGTTCCAACACCTCAAGTGTCGGTGGGGCCGAGAAGAAAGGCCTGCTCGGTTTCTTAAAGTTCAACAGAAGGAAATCAAAGGGCCTGTCCACAGTGTCCATCGTGCCCTGTGTGGACGCGCGGCCCAGCACCTTGGGCCAGTCCCAGTCCGTCATGAACATCTCCAGGATGTCCCCCAGGATAGAGATTAAGAAGAGGCGGGCCCCCCCGGCCCCCACACCCTGCCAGGGCTGCTACACACTGGAGGCCTACCAGgtggcTCCTGACTCAGAGAGTACACTGAGGAAGAGGAAGGCCCCGGCACCCCCTCCTACTCCTACTACCTCTGTTACCCCAGCTCCTAGCACCCCAGCACCTTTCATCTCTGCCCAGAtggccccctctccctccccagcccCCAGCTCTCCTACCCCCAGCCTGCCTGCGGAGGAGGACTCTGGCTCTGAGCTGAGCAATGGGTCTGtctacagcagtagcagtagtgggGTCGCCGCCGGCACCTCTGTCGCTGACACCTCAATGGCCGACTCTGACTCCGCCTCCAGCAGGGCTGATGTGTCCAAGCCCGGCCCTGATTCCACCCCCAGCAGCAGTGCTGCCATGGCTGACTCCTCCCGAGACACCGCCCCCAGCAAGGTTGTCACCGGCCCCAGGAGCAAGACTATGATCAATGTCGCCTCTTACGCCGCCCCTACCAGCAAAGTTGAAAAGGTTGACTCAACCCCCAGCAGCAACGCTGACAAGGCCAAGCCCACCCCCTACTTGTCCCGCAGTACCAcaccagaggagaccagaggagaatcTGCTCTTGGCCTGAAACTAGACGAGACGGAGAACAACCGACACAGCGCCATGGCTTGGCTGCACTCTCGGCGTCTCTCTGTGGCAGGACCCCAGACCCCAGAAACAGAGGCAGAGGAGACTTTATCCATGGGCAGCAGTGGCAGCTTCCAGGACCAGGGCTATGCAGCCTCCGAGGGCATGGCTGAGGACTCTGGCCTGGTGTTCTCCCCCTCGGCCTCCGACACCACTCACCCTACCTCCCCTGACGGGAGCCTCTCCCTGGGCTCTTCTGGCTCCTCTCACCCCATGATCCATCCCCTCACCAAGGACTGTTCTAGTGATAGTGACGAGGGCTGTGCCACGTGGGGCTCCAGGCACAGACACAGCAGTGATATCAGCCACAACGACAAAGCAGGCAAAACAAAGGACATCTATGACGAGGACCCAGAGCTCACCACTCAGCTCAACCAGACTCTGGCTGATCTGGATGCTGATCTAGCAGATATAAGTCACATAGATGCTGTTTCAGTGCAAGAGCACCCCTACGTGATGTCCACTGAGAGCAATGACATCCCGGTGTCTGTGGTGGATATGGAGGTCCCGGTCACAGCCATAGATGAAGTCCTGGAGGACTACGAGACACCGAGCATGACGGATCACCAAGTCACACTAATGAGTAGCTCTCAAAGAACGGACAATAAAAACCTGAACCACAGTCATCATCATTCAAGTGTTGGTGGCATacagaacaaaaacaacaacgccTGTATGTCTGACGGCTCCAGCAAAGTCAGCTCTGCTCAACCACAGCCCGCGCAGCGCCTCAAATCACCAGGGAAGAAGCTTGCCAATGGCACCATGGGGAAAGACCATACAGCAGTGGTCTCTAAGACTAAAGTAGAAGTTCAAAGATGGGAGTCCACTGAGGGAGCTGAGAGGAAAGCCTCACCTGTCAACAGCTCTCTCGCTGTCCCAGAGAGCCATTCCAAGTCCCCTGAGGACGAGGTTCCCACCTATAGAGGCCACGCTGCCTCCCAAGCACAAACGAAAATCACATGTAGCCCAGTCTCCCGATTTGGTATGAAGACATTCACTATCATCCCTCCCAAGCCCGCAGTTGCAACCCGGCCTCAGAAGCCAGCAGAGGCCCCGGCCACTCTGACAACAGGTGCCATTAGAATTGACGATCAGGGTAACATGGTCAAAGTAGCCATCGCCCGAAACAAGTTTGGCGGTTCCTCGGAGTCTGGGATCAACAAAGATGACTCTGTCTCACCACTCCTGGGGAAAGCCAAAACATTCCGGAGCTCCTCTGAGAAGCAGGACACTTCTGCACATTCGGTCCCCACTAGTAGAGGGCCTGTCCCTTTCACAAAGACCCAGAGCCCAGAGTCTGAGGTCCACAAACCCACCGATCGGGTCGTAGCGTCTGAGCCACCTGCAGCCAAGGCAACACCTAAGGCCTCTGAACCTGTAGCCAAGATGACACCTAAGGAAACATGCAAAGATGTGGTTGAGGTAACAAAGGACATCTCACAGGAAGCAGAGGGCAAGGCCTCAGTTCCAGTTTCAGAGACTCCTGTGCAGCAGAAGACTATGAAACTGAACCCTGGTATTCTCCAAGATCAGAAGAGAAATCTTTCCTTCCTCAAGCCGTCCAGGAGAACATCCAGTCAGTACGTAGCTTCTGCCATTGCTAAATACGCTGTGAAGCCCACCATGGCCAAAGCTGACAACATCCAAGAAGTACCAACGGAGTTGTCTGACCCCATGAGAAGGCCACCTGGCAGTTACGGCTATCAGAAAGAGGGTCAATCCTTTCATGTAAATCCACAGCGTTCCTCTGGTACATCTACTAATGTACCAGTGAAGAAGGAGAGCAGCTCTGGGTCTGGGTCCTATCACGCCGGTGCTAAATGTTACCCTGACTACCTCTCTGCAGAGAAACGGGTAGTCTCTGGTGAGTCGACGCAAGGAGTGGACAGGAGTCGTTATGGGAGCAGTTCTACCCTGCGAGTTGCTGGACGGAACTCCAAGTCACTGGACTCTGATACAGTGGCCAATAACACTAAGCAGCATGGGCCCAACAGTCCCAGTCCCAGACAGATGACACCAGCACCACAATCCCCCACTAAACAGGTACCTGCCATCTCCAAGCCCTCGCAGGGTCAACCACCTGCAGAGACACTAGGTCCCAAAGGTCATCCAGCCCTGGCAAAGAAGCCTGAACCACCACGAGCAGCTGCTGCCAGCAACGACCTCCCAGAGCCCCAGCAGGTCAGTCTGTTTGGGCCGGTGAAGAAGTTCAAGCCTGTGATCATGAAGTCGGTCCAGATGGACACGTCGCTACACACCACTCTGATGTCAGCCATCCAGTGTGGGGATGGGAAGGAGAGGCTcagaaagGTATCGGACTCAAGTGCAAGCAGCACTTTGAAGAAATCGTCCTTTGTTGAGGAAGAGAATGAGCGATGTGCGCTACTAGCAGCCATTAGAGGACAAAGTAACTCTGCAGGGCTAAGGAAGACCATATCCCAGGCTGCAGAGGAGCTTGACAAGTTCAGGAAGACTGAGGAGGAAGTGTGTGATGCCTTCCCTGCCATGCCTTCCCCTCCTCCATTTGTGCCTCCGccacctccacccccctctatgctccctcctcctcctcctgcccctccCTCCACTCAGCCCAAGCCCAGTATGGTGggggagcctctgggggctgggCGGAATCCCACTCTGGCCCGGGACGCAATGCTGGAGGCCATCCGCTCTGGCTCTGCAGCTGATCGCCTGAAGAAGGTCAATGCCCCCACAAAAACAGTTCAAGTGAACGGTAGACTTGGTACTATACAAGCAGCATCATCCCTCTCACAAGGACAATAAAGAATCTTCCAGAATGATTCCAGAACATCTTGCAAACCATCTGATTAGAATCGTCGTAGGCAGCCAAATAATATGTTGTCTTTCACCTTAATTTATCACTGTCCTTATGTATATGTGTACTTGAATAGTTGCAATAACTGGAAAGATGAATTGCTGTACAAAAGCATGTGCCAATAATTTGTTTTGCTTTTTATTAGCTGCTCTTGTtgctgctgatgatgatgataatgatgatgatgatgatgatgatgataataataatcatcatagGAAATGATTTTTCCTCTTTTATTATTTcttttttatttgactttttaaTACTAGTCCACATGGAATTGATGCCTCATGCTGTCTTACTGTCAGTGTTATATTTGATTATTACATATTTGCTGTATATATTCCATGTAATAGGATGCAATGGATCAGACTCCTTGATATAGTGCAATGAGTAACACTGGTCACCAGTAACACTGGTCAAGCATGACTAAATTTGGCTCCAAGGGACTCTCCTCTCCAGGTGGTGATTAGGgtatgtatcccaaatggcaggttattccctatatagtacactacttttgaccaaaacctTATGGGCCCTTGGCAAAaactagtgcactaaatagggaatagggtagcattACTCTAGTTTATTTTTGCAAAGCTCTGGGTTTTTAGATCTCATCTATGCTGCTATTCAAcctttacatgtttttatttttggaTTTATAATGCCtcttaatatatttattttaatattCAGAGAAAAGATTACTAACATATCCTTTCTTGACATTACAAAAGCATTTTTGAAACATTGAAACTATTGGTGAATAATATCACCATGACTTAGTAAAATAGTTTACTAATCAATAGATATATGAGTAATGAACAACAGGTATGGGCTGTTACTTCATTTTCAGCAAAAAATTCTGGTTAATATTTGCTAtgattttattgtttatttaatcaCAAAGTGTTCTATGTTGTTTGCATGGGGCTCCAGTGCACAGCTTTTTGTTATTGTACTCAACAGTAGATCTGATGTGCAGTACTGTACATGAGCTTGTTTCTCTAGACATTTTATGGCATTACTATAGTAGTTGAAAGAAAGCAAAAGTGAATATTATAATATATCTTGCAAATGAGTACTATTTATATTGATCAGAATGACTGAATGATAGACTTAAAGAGCCACCCAGTGTAAAGCATGAAAATAGGGACCACAAGATTCTAgactggtctgtcaaaatatggATTCATAGGTTGTCCAGTTCCTTAAAATTCAGTTTAGATGTTTACTTATGTTCTAgaccagcaggctccagacctcgtagggtaagagttgaaggTAGACCTCGTAGGGtacgaggtctggagcctgctggttttctgtgttacctgataatgaatttcccccacctggtgtcccagttctAAATCAATCCCTGATTAGAGAGGAACAATGGAAAAAAAGCAAAGGAACTGGCTTCAAGTTCCAGAGTTGTGTTTGAGGCTAGAAAGTTGTATATTTTGTTAACTACAGATAAATGATTACAGTAATAAACTGTTGTTAAAATTGGAAATAAATAGAATAATAGAAATCCAATCAAATGTAGTTTTAAGCTAATGCTTTTTTATGTTAAGTGCATGTTGTTTTTGGAAGAATGTCACATTTTATTTTATCCACAAATTATACTTTTTTCAATAAATGATTTTTGTAACCATGTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148482 lncRNA upstream 2448 28712992 ~ 28718735 (+) True G128760
TU148468 lncRNA upstream 27216 28693692 ~ 28693967 (+) True G128747
TU148467 lncRNA upstream 27578 28693346 ~ 28693605 (+) True G128746
TU148466 lncRNA upstream 27937 28692952 ~ 28693246 (+) True G128745
TU148462 lncRNA upstream 30784 28690095 ~ 28690399 (+) True G128741
TU148539 lncRNA downstream 71030 28851577 ~ 28851809 (+) True G128813
TU148507 lncRNA downstream 83749 28864296 ~ 28865175 (+) True LOC110485935
TU148849 lncRNA downstream 574925 29355472 ~ 29356526 (+) True G129093
TU148855 lncRNA downstream 586427 29366974 ~ 29367331 (+) True G129099
TU148906 lncRNA downstream 692735 29473282 ~ 29473490 (+) True G129149
XM_021557031.2 mRNA upstream 33853 28537535 ~ 28687330 (+) False LOC110485836
XM_021557045.2 mRNA upstream 33853 28537535 ~ 28687330 (+) False LOC110485836
XM_021557037.2 mRNA upstream 33853 28583743 ~ 28687330 (+) False LOC110485836
XM_021557053.2 mRNA upstream 33853 28602655 ~ 28687330 (+) True LOC110485836
XR_002468004.2 mRNA upstream 39576 28537533 ~ 28681607 (+) False LOC110485836
XM_021557181.2 mRNA downstream 3027 28783574 ~ 28865311 (+) False LOC110485935
XM_021557189.2 mRNA downstream 3027 28783574 ~ 28865311 (+) False LOC110485935
XM_021557198.2 mRNA downstream 21223 28801770 ~ 28865311 (+) False LOC110485935
XM_021557206.2 mRNA downstream 21223 28801770 ~ 28865311 (+) False LOC110485935
XM_021557228.2 mRNA downstream 66574 28847121 ~ 28865311 (+) False LOC110485935
TU148197 other upstream 173268 28250842 ~ 28547915 (+) True G128490
TU148132 other upstream 631738 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 1004020 27716482 ~ 27717163 (+) True G128185
TU147350 other upstream 1417628 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 1530590 27189991 ~ 27190593 (+) True G127644
TU148570 other downstream 151509 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 159352 28939899 ~ 28981288 (+) True G128853
TU148818 other downstream 697070 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 704086 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 819479 29600026 ~ 29641096 (+) True G130308

Expression Profile