RNA id: XM_021557189.2


Basic Information

Item Value
RNA id XM_021557189.2
length 6414
RNA type mRNA
GC content 0.42
exon number 17
gene id LOC110485935
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28783574 ~ 28865311 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAGCTGAGAAATCAACTGCTAGCTGCTTGTCCTCATCGGGAATGTTGACCACTGGAGCGTGTTGAGCAAGAAAAGCAAAGCTGTTGCGCGAGCAACTATTTTCAAGTTGTGTCTTCTCATCCCAAGTGCAAGGCTGTCTGATTGCTCTTGTTTGAAATTCTACAGAGGCCTGTCAATAAGGTTCTTGCATCATCTATCAAAAGTGAATGGGAAAACCCAAAGAACAGAGATTGATAAATAGCTCCATAGCATGGCTGTAGCCGGATGTCCAGATTATTTTCTACACCATCCAAATTATCAGGACAATGTAGAACGAGCCTCCAATCACAGACCAGCAGATCTAATTGGGCCGAGTTTCCAGAAGTCAACCAATCGGAACCCCCCTAACCATCAAGAAGATGATGTGGACCTGGAGGCGCTGGTGAATGACATGAACTCCTCGTTCGAGAGCCTGTACTCCACATGCAGCAGCGTGCAGTCTGAGTCGGTTCCCCTCCTGCAGCACAACGGCCAGGTGCATGTGCACCGCGACCACCACCGCAGCGCCCCCATGCCCCCCCACAGCCACACCTCCAACAGCGAGCTGCAGCACAGCACCACCTCCCCCAAACAGAGACGTCGACGCTCCCAGCCCATGCACATCCTCGCCGTCAGGAGACTGCAAGAAGAGGAGCAGCAGCTCCGGACGTCCTCTCTGCCAGCCATCCCCAACCCCTTTCCCGAGCTCTCCGGCTCTCCTGTCCTCAGCCCTGGGTCCTTACCTCCGTGTCAGCCCTCAGGCACATACATTATTAACATTTTCAGCGAGGACGGCATGGGGAAAGTAGTGGAAATCCCAGCCGACATGACTGCAAGAGATCTTTGCCAGCTCCTCGTGTACAAAAGCCATTGTGTGGACGACAACAGTTGGGCACTTGTTGAGCATCACCCTCTCCTCGGACTAGagaGGTGCTTGGAGGACCATGAGCTAGTGGTACAAGTGCAAGCATCCATGACCAGCGAGGGCAGATTTCTGTTCAGGAAGAACTATGCCAAATATGAATTCTTCAGAAATCCCTTGAATTTCTTTCCCGAGCATATGGTTGCATGGTGCCAGGAAACAAATGGTGCAATCCCACCATCTCAACTTTTACAGaaTTTCTTGAACTCCAGCAGTTGTCCTGAGATCCAGGGCTTTTTATACGTGAAAGAGATGGGCAGGAAATCCTGGAAGAAGCTGTACGTGTTCCTTAGACGCTCAGGACTTTACTTTTCTACGAAAGGAACGTCGAAGGAGCCCAGGCATTTACAGTTACTAGCAGACCTGGAGGACAGCAATGTCTTCACAGTAACAACAGGCAAGAAGCTACACAGTGCGCCGACAGACTACGAGTTCTGTATAAAGCCCAACAAGAGGACTGAACTGAAAGAGTTGAGGATGTTGTGTACTGAAGACGAACAGAGCAGAACTTCCTGGATGACAGCCTTCAGACTCTTCAAGTATGGAATAGTCCTCTATCAGAACTACAAGATTCCTCAGCAGAGAAAAACTCTGTCACACTTTTCAACACCAGTGCGGAGTGTGTCCGAGAATTCTCTGGTTGCCATGGATTTCTCAGGAAGGATAGGCAGGGTGATAGACAATCCCTTGGAGGCCCAGAGCGCTGCCATGGAGGAGGGCAATGCCTGGAGGAAGAGAAGTCAACGGATGAACATTCTAGGTAGTCCCAGTCCACTACATCCCTGTTTATTAAACTCAGTTATTCACAGAACACAGCTGTGGTTCCATGGGCGGATAACGCGAGAAGAGTCCCATCGGATGATCCACCAACAAGGCCAGGTGGACGGGTTGTTTCTCTTGAGGGACAGTCAAAGCAACCCAAAGGCCTTTGTCCTCACACTGTGCCATCACCAGAAAATTAAGCATTTCCAGATCTTACCGTGTGAAGAGGACGGCCAGATCTTCTTCAGCCTTGACGACGGGTCCACCAAATTCACCGACCTGATCCAGCTGGTGGAGTTCTACCAGCTCAACAGAGGAGTCCTGCCTTGTAAACTCAAGCACCCCTGCACCCTCGTAGCCTTATGACCCCTGACCTATGACTTGACCGGACTCTGCCTAAAAACAAACTCAATACTTTTTCTTTAGGAGAAGCTGATGTGGTGAActcatgttgttgttgatgtgtcaTGAGCTGCCAGAGACTGCGGATGGAACAGGACGGAGTGGTTGGGGGGTTAGGACGGACGCCAGTGGACTTCAGTGACCTCTGTGTTCCGGAAGGAAGAAGGAGATATAAAGAAGCAAAAAATAAAGCAAAAAGATGCACCACGTTGTTATTAACTCtaatataaaaatgtataaaacattttcaAGTTTGTATTCATAGTCACCAATAAGCTCTGATCCACTGACACGGTTTAGTGACAGTTTATGAGATCAAAGTAGTTTTTATTTTCCTTGTCCAATCATCAGGACTTTGTTTAGTCTGGGCCACTTTTTTACATAATGAAagtatttttttgtgttacaAATCATCTATACTACAACCTTTTTTTGAAAAGCTGATTGTTTTCTAGTGTGGCGCTTGTGAAACTGGGAACAGGCCTTTCCATACTTTCTTCTCGTTACCAACAATGGCACATCCCTCCTGtgttggagggatggatggacaaTCTGATATTCGGAAAAAGAACATCACGAGACGGATCACGAGGCCAGCTGTCTCTGTCAAGCTGTGGGAAAGGAGAGGCTGGAGCTGGTAACTTAGGATGGAGCTGAAGGAAACTCAAGGACTACACAGGATCCATTCATTCCACTCTCATAggacttttctttctttctttctttctttggtgACCTCACAGGCTTTTGTGTTCATAACATTTTAGTACTGCATCATCAAATGTGTTCTTAGTCTCTTTTAGTTTCTTGTCAGTAGTCTGGAGTGTATAGATTTCTAATAGTCACACAACAACTCAATCACTACATCCAGTTCAGTGTTAAATCAATCCATCATCAGCTCCACCATCCGGTGTTCCACATGCAACCACATGAACTTCCCCCCAAAATATAAACTACTACAGGTATTCATTCACTCCCCGTCTCATCCACTCATTTAAGTCCACGTAATAGGTAGCTGTTGAGGTCCACGCTGCTAGCCTAGTCCTATACTGTGTGCTATAACCAACCCTTCTATTGTTGCCTACAGTACGTATTCAGAATGGCACTAGGCTACCAAGCTGCTCCTCAGGTgataacaagcaacataacagcCAAGGAAGGCTCTGCTCTTGGGTCTCTCTTGGTGTCAATGTAATAATAATCTATATGTAAAACATTGGAAAGCACATGGCCATCTTGTGGACTGTAATTCCATGTTGTAAGCACTCTGAAGACATGGTTATGATTATATGACTAAAACCTAACTTAGGCCAATGGGGAGGGTGCCACAGTTTTCTTTTAAACCCACCTGTTTGCATTCCCTCCGTCAGAACACAGGGAAATATAACCACTACATCAACCTCTTGTGATCCACTAGAGGGATCTGACGAGCTCAGAGTTGATGTGTACAGTCCAAGGTCGGTCTGTCTGTTGTGCTGTCTGTAGAATTGAACTGGAATCAATCGACTCATCTGCTGTGAGGACCCATCTTCTTAATCCAagtgtgtgtcccaaatagcaccgtattctctacatagtgcattacCTTACTTTTGAGTAGGGCCCATAAGtgtttggtcaaaagtagtgcactatatcgggaatagggtgccatttgagaccgAAGTCCTTTAATTTCGGACTTGTTGCTTTTCTTTTCGATGATGTGATTGAATGATTGTTTTTAGAACAGACACTGTGAAGCCCTAGTAATGGATGATACCCTGAAGTGGAAGGGGTTTTACTGTCCAGCCTCGTCCAAGGTTGCAGTGAACACACAGATTTGTAAAGATGTTTTTACCTGTAACGCAACATTAAGAAAGAgccatctttttattttatttatagtGTCTTAAGCTGGATAGATTCAGATACAGAATATTAGCCACACGATCTACAAGTTCTGCACAatgacattttaaaaaataagatGCAATGACTCAATCATTTCAAGTATTGTTtcgcaaatgtatttatttatctagaTGTGAGTGATTACTTGAAATGTAGCTCTTTTCTCAGTGCTGTTCGTTACTGTTTCATCATTACCATGGAATGATTGAACCGCGTAATTATTACATAGCATCTATTACATAGCCTATAATTCATTTATTGCTTTTTATGTTTGAACACTCAAACTATTTTATCACCAACACTTACTATGAAGTAACATTCAAGTGGTGTTCCCTAATGGTTTTCATTCAGTAGAAAAAGTGTGGGGAATAAAAGTCACTAATATTTCAGTCACAGTGCGTTTCACATCGATATTCAGTTTAATGCTTTTCTCTCACATTCTTCTACATTTAGGAAATCTTTTCACATGAACTCCTCAAGAATATTTCAAACACACAGGTTGAATTAGATTACTtaataaaacgttttttttttttttttttacatatttaaaTATTTGACCTCTTCTTAAGTGTGAATTTCACTGATGCTGTCAATCGAACAGATTTCATATCTGGATATTTAATTCATGAGTTGATTTTCAAATTCATAGTTTTTTGAGCTGTCAGTTCGGTTGCTCTGTCCCTTTTCATTACAGTTAGTTGTCTTCCATTTTACAGAACGTTCACTCTTTAAACTTTGCGTTAATCAGAACTTTGTTTCTTGTCAGAAGTGAAGCTATACCTTTACAATACTTGAGCCACAATTACAAAAAACAAATTGGTGTACAGTACGTTAAATGGCCAAGTCTTTTCCACAGCGTAGTGTGTATTATCCTATTAGAAAGGCTTGGATGTGATGGCACCACTAGATGCCCACTGCAGTACCTTTTCCATGGAATTTTGAGAGCTACACTTCACTGTTTATTGGGTGTGACCAGAGCCGtgaatatataatatatgttaaTGTGGGGCTCTGGGTGTGGCATCATTATGACTATACAATGAGCAGGTTAGGTGCCAAAGCTGTTTCCTACTCCTATGCTAAATTAGGTCAAAACGTTGGACAATATATCTTCCCATTGGTCAAAATTATTTCAGTAGAAATCAGTTAGGATTGCCTCCTCCGGTGGTAATCTTAGCTGTACAATGTTATATGCAACTCATGTAAAAGTTGTGTACTGAATCAATGTACCATATTAGCATATGAAACCATGTAGATGCAACACTGTATTTAGGTTACAGATCACTATTATTACCGCATTGGCTTACTCTTAACTACTTATGAAATGAAGAAACTTGATTTATTTTAGTGGTTTTTATCATTTGGTATAATGTGCATATCGAGTTTGTTTCTTGTGTGTTTCTCATGTAAAAACCTCTTCACAAATGTCTGTAATATTGAAATGTTGCAGGTATGGAACTGGAGTTGGCTTGGGCATGCATCTTTTCATAGTTCCTGCAAGTCATCCTAAGCTACTCGGACATCACTGACTTCTCAACACTAACTGTTTAGGCCTGTCAGATACAGATACATAGGTGTTTTTCATATTCAGAAACATTCATATCAGAGGCGAGTTCTCTCACATAGTGTCTTGCTATGAACTAGTAGAATGTTGCTAGTGACATTGAATCACCTGCAAAGTAGTGAACTGATGAAAGTGAATTAAGTAAATGTACTTTTCTATGTCAGAGAAATGAATGTAACTGGGTTGCTCAGGGTTGACATGGAGCCTGTTGAAAACTGGTCTTATCGTCAGACCAGTGACATTTTGTATGTGCAACGAATACATTGTGTAGTTCTTTTGATCAACTTGGGGTTAATAGTATTTCAATATTTTCTTTAGTAAGTAGTTTGGCCTTTATGATGTTCTTTCACCATACCAGTAGTTTCTCCCAAACAGTAGTACAGCACAGTTGATTTAAGGTGTCCTCTTTTCTCTTGTGTAAGTCTGTTTGTCTCAAGAAGCCTAAAACGCAGCAGGTGCCTCTGATGACCTTTTTCTCTGCACTAAAACCAGAGCTGACTTTGGACCGTTCATGGGAACCTTTTCCAGTGATCGATAATGACTCTTGTGCTTTGCATATATTGTCACAATGCAAGATATAGTGACTGTACAAAGGAGTAAAGCAaatatatatagatctatataaaTATAAACCATTATGTATTTCAGggaatgcaaaaaaaaacaagaaccTGTATCTCTTTTTAAGAGAAAGATCCTGTATTCATACTGTGCTTTGCTTTGATCTGTAAATAGCTGAATGGCTTATATATCTTAATTGTAACCTTTTCAGGTATTTTTGTACAAATAAGGGACTGATATGTTCTGTTTATTGTAATTAGAATAAAACATTAATACATTGCTATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148354 lncRNA upstream 9992 28768219 ~ 28773582 (+) True G128638
TU148482 lncRNA upstream 64839 28712992 ~ 28718735 (+) True G128760
TU148468 lncRNA upstream 89607 28693692 ~ 28693967 (+) True G128747
TU148467 lncRNA upstream 89969 28693346 ~ 28693605 (+) True G128746
TU148466 lncRNA upstream 90328 28692952 ~ 28693246 (+) True G128745
TU148849 lncRNA downstream 490161 29355472 ~ 29356526 (+) True G129093
TU148855 lncRNA downstream 501663 29366974 ~ 29367331 (+) True G129099
TU148906 lncRNA downstream 607971 29473282 ~ 29473490 (+) True G129149
TU148908 lncRNA downstream 608942 29474253 ~ 29474520 (+) True G129151
TU148910 lncRNA downstream 610461 29475772 ~ 29475990 (+) True G129153
XM_036944436.1 mRNA upstream 3027 28721183 ~ 28780547 (+) False LOC110485894
XM_021557241.2 mRNA downstream 1991 28867302 ~ 28905546 (+) True LOC110485968
XM_021557254.2 mRNA downstream 49510 28914821 ~ 28931101 (+) False LOC110485980
XM_036944479.1 mRNA downstream 49603 28914914 ~ 28931101 (+) True LOC110485980
XM_021557264.2 mRNA downstream 66677 28931988 ~ 28951235 (+) False LOC110485990
trnat-ugu-29 mRNA downstream 156108 29021419 ~ 29021491 (+) True trnat-ugu-29
TU148197 other upstream 235659 28250842 ~ 28547915 (+) True G128490
TU148132 other upstream 694129 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 1066411 27716482 ~ 27717163 (+) True G128185
TU147350 other upstream 1480019 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 1592981 27189991 ~ 27190593 (+) True G127644
TU148570 other downstream 66745 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 74588 28939899 ~ 28981288 (+) True G128853
TU148818 other downstream 612306 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 619322 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 734715 29600026 ~ 29641096 (+) True G130308

Expression Profile