RNA id: XM_021557254.2


Basic Information

Item Value
RNA id XM_021557254.2
length 2947
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC110485980
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28914821 ~ 28931101 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAATGAGGAGCTGTATTCTTCAGATCACTTACTTATGCTCTGCTGCTTCCAGCTGACGAAGGAAGATCCACACTCACTCTGAGGAAATGGCATGCAAGTTTGGGACATATCTAGCTTTCTTCTTTCTCCTGGCAAGTCTGGCTGTCATCATTACAATATCCGTGATCCAGGGTCATAAGCGTGTCTTTGAGTCACGTCTGAAGTATGGCATAGTAATTGACTCAGGCTCCTCCCGCTCTACTGTGCATCTGTATCAATGGCCAGCCGAGAAGCAAAATAACACTGGAGTGGTGAGCCAGACACTCAGATGCATGGTCGCTGGCCCTGGTATCTCGGATATGTTAGTTGACAATGCACAGGACCAACAGTCCTGGGCGTCGATCCGAGAATGTATGAACAACATCACAAAAATCGTCCCCGCAGACCAACACAATTCAACCGTCCTCTACCTTGGGGCAACTGCTGGGATGAGACTGCTACATTCACAGAATGAAACCAAATCCAATGAGATCTTAAAGAACCTGCAGAACTACCTCCAATCCCTGCCGTTTAACTTCCAAAACGCCTCCATCATGTCAGGGAAAGAGGAAGGGCTGTACGGATGGATCACCGTCAACTACCTGCTGGGAAACTTCCTGGAGAGAAACATATGGAACATGTGGGTGCGTCCTGCCGGAGGGAAGATGGTGGGCTCCATGGATCTAGGAGGGGCGTCCACCCAGATAGCGTTCACCCTCCCAGATCCCAACGCCCAGGGAACAGACATTGTACGGGTCTCCCTCTATGGCTACGAATACAACATCTACACTCACAGCTTCCTGTGTTATGGGAAGAACGAGGCTGAGAAGAGAGTCCTCGCTGCTTTAGTGAAGAACTCTGAGAACGCTACACATGTGACCAACCCCTGCTTCAATCTTGGTTACAACATGACTGTGTCGGCTGAGTCCATCTTTGGGACTGAGTGCATAGAGACGCCTGCCGACTACGATCCCAACCAGATGATCACCCTGAAGGGGTCATCAGACAACGGAGCCTGTAGGGACGTGGTGAAATCCATATTTGACCTGACCTGCACAAAGAACTGTTCCTTTGACGCAGTCTACCAACCATCCGTGGGACCCGGGGACTttctgGCCTATGCTGGGTTCTTCTACACTGCTCAGGCTGTCGAGCTGAAAGGCATTTCACAACTGGACCAGTGGAACTCCTCTACCTGGGAATTCTGCTCCTGGGACTGGCCCACCctCAAGCTAAAAAAGGCCTGGATAGCTGAAAAATACAGAAAGTCCTACTGCTATTCAGCACATTACGTCCAGACATTACTTGTAAATGGCTACAAGTTCAATAAAGATACTTGGAAACACATTGACTTCCAAAAACAGgTACATAACACAAATATAGGCTGGAGTCTGGGCTACATGCTACATACATCCAACATGATCCCTGCTGAGGCCGAGCTGGTGCGTCTGCCCATGGCCAACTCTGTGTTCGgtggcctcctcttcctcttcaccgCCCTCACCATCGTCAGTGTCATGTTCCTGATCATCAAGGCTGTGCGCGCCTGCTACTGACCCCCACTAGAGGGCAGAGTGTTCAAATTACAGTTAAACCTAGAGTTacagtaactttcccaaaatgtgttttttccaGAAATCTGTtttggaagattcctggaatcaggaggaaatggaatcctccaaccaggatttctaaaAAACCTTgtaattttgggaaagttacagAATATGTACAGCAGCCCTAGTTAAACCCGATGGAGGAAAGTGCTTCTGGTCCCTCCCAGACACAGTTACAGCAGGCAACAATAGAACACTGACAGGTGCAAGGTATTATCACCAGATATTATCATCATCAGTTAAAGAGATTTAACAGGATCTTAAAGCCCACATAGAGTCTTATTCATTTGATTTTTAAGTCATATGTTTaataaatcactgtgtgtgtttatttcatgaaaataactccaaatatatttgttattatttatttagaGCTTCCTTTACAattgaaatgctcagtctgatcaTGTGGGTGTGTTGAtataaatgtaaatatatttacatacacagccctgattggcAAATAGGATCATCTAGACTCTAGACTAGAGCCTACCTTATACCTTCAAAGTAGGAGGATACATATGCTAATAAAAGTTGACTGGTCATTGATCAAAATAATCAGATGAGATTGTGATGTCATACTGTGGGCCAAACACTCCCTCCCAACCGAACAGTGTTGTTTTGACCTCATACTGAAAAACGGGAAATCACGTTTTGACTGCACTGCCTCTTTAAGCACTTACAAAtgcataacatattgtacaaattggaatttgtaataTATCATATTCATTGCAGGGGTACTTTCAAAAccactggctgaaattatacaaaacatAATAATGTATCTTAAGCTGTTTAAAGGATCTCTATTCCATgtgtttgtttgagtgttttcaGCGAGAAGATACACTTGAGGGTCAGTAATGCATTATAAGATCTTGTTCGCTGCTTTAGGCTCATCCCAAACAGACGAATGAGACAATTCTAAGATATTCAGTGACTTCAAATGCTCAATTGGTCTTTAAAGTAAAATAAAAGAGAAGTATTAATTGCATAATGAACTGCTGAGCAAAAATGATCGCCGTGTGCACTAAGTCATCGGCTATACAGTACTGAAGATCAGGAGGTTGAATGAAGGTTGAAGGTAGCATGGAAAACACCTGAAATGACTACAATCTCTTTATTACATATTTTGCTGGATGGCATGGCATTATCGGTTATGTGATCATCTACCTCCGAGATTTTGCATGTTTCTCGTCTGATGTACTATATCAGCAAATCTTTGTCATACAGTCATTTTTTTGTTGGTTGAATGTTCCATATTAACAATAAACTGAACATCACCTATGATGTTATCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148507 lncRNA upstream 49646 28864296 ~ 28865175 (+) True LOC110485935
TU148539 lncRNA upstream 63012 28851577 ~ 28851809 (+) True G128813
TU148354 lncRNA upstream 141239 28768219 ~ 28773582 (+) True G128638
TU148482 lncRNA upstream 196086 28712992 ~ 28718735 (+) True G128760
TU148468 lncRNA upstream 220854 28693692 ~ 28693967 (+) True G128747
TU148849 lncRNA downstream 424371 29355472 ~ 29356526 (+) True G129093
TU148855 lncRNA downstream 435873 29366974 ~ 29367331 (+) True G129099
TU148906 lncRNA downstream 542181 29473282 ~ 29473490 (+) True G129149
TU148908 lncRNA downstream 543152 29474253 ~ 29474520 (+) True G129151
TU148910 lncRNA downstream 544671 29475772 ~ 29475990 (+) True G129153
XM_021557241.2 mRNA upstream 9275 28867302 ~ 28905546 (+) True LOC110485968
XM_021557181.2 mRNA upstream 49510 28783574 ~ 28865311 (+) False LOC110485935
XM_021557264.2 mRNA downstream 887 28931988 ~ 28951235 (+) False LOC110485990
trnat-ugu-29 mRNA downstream 90318 29021419 ~ 29021491 (+) True trnat-ugu-29
XM_021557298.2 mRNA downstream 107827 29038928 ~ 29054543 (+) False LOC110486009
XM_021557306.2 mRNA downstream 107827 29038928 ~ 29054543 (+) True LOC110486009
XM_036944522.1 mRNA downstream 129487 29060588 ~ 29081536 (+) False LOC110486020
TU148197 other upstream 366906 28250842 ~ 28547915 (+) True G128490
TU148132 other upstream 825376 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 1197658 27716482 ~ 27717163 (+) True G128185
TU147350 other upstream 1611266 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 1724228 27189991 ~ 27190593 (+) True G127644
TU148570 other downstream 955 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 8798 28939899 ~ 28981288 (+) True G128853
TU148818 other downstream 546516 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 553532 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 668925 29600026 ~ 29641096 (+) True G130308

Expression Profile