RNA id: XM_021557284.2


Basic Information

Item Value
RNA id XM_021557284.2
length 4204
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110485998
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28977829 ~ 29007911 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGGATATGGGATTTGACTTTGCAGTGGGTGGAGACAAGATAGCAAGTTGAATCGAAATCGCCTTTTTGACAGCtaacataaaaaaaatactgtGTAACTTTAAACTTGAATGAATGCGTTGGTATTTCGTACAGTTGCACCTACATTGAGGCATATCGTTAAGGAGGTTCATTCTATCACGTCAATCCTCTGGAAGGTTTCTGCGGAGAGTATGCTCTGGAGCTTGTAATGCTGCCTTAGCTGAAACGTTTCAGCTGCAGTGAAGAAAAGAAAATACCTTTCCGTTTTATCGAAACTCCCCGgtGTATCGGCGCCTGGCTAGCGGGAGTCGAAGCATGCGTGTGAGGTCAGAGATCAAATTGGACGTGGAGCTGTGATGCGTGCGGCGAGCTGCAGGATGAACGTGGCGGCGATACTGAATGGCCTGCTGGTGTCAGTGGTGGCAGCACTGCTCTGGAAGTACGTGAGGCTAAGCGAGCACGCTGCAGTACTGGAGGAGGAGCTGCAGCTGACCCGCCAGTCCCAGGAGTTGTCCCAGGCCCGGATAGACTACCACGCTGCTCTGCTGGCCCTCCAGGAGTATGGCACCCGTATGGTCTGCACCGGCAAGATGCACACTGATCGCATCTGCCGCTTCGACTACCTGTGCTACTGCACCGAGGCCGAAGAGTTTGTCTTCTTCCACAGCAACTCCTCCTTCATGCTGCCCAACCTGGGGCCCCGGCGATTCCAGCCGGCCCTGCTGGACCTGTCCTCTGTGGAGGATCACAACACCCAGTACTTCAACTTCCTGGAGCTGCCCGCAGCTGCCCTCAAGTTCATGCCCAAGCCTGTGTTCATCCCTGACGTCACCCTCATCCTCAACCGGTTCAATCCAGATAATCTGATGCATGTCTTCCACGATGACCTGCTGCCCATCTTCTACACCATGCAGCAGTACTCGGACCTGGATGATGAGGCCCGCCTGGTCTTCATGGAGGGCTGGGGTGAGGGCGCACACTTTGACCTCTACCGCCTGCTGAGCAGCAAGCAGCCACTTCTCAAAGAACAGCTGAAGAACTTTGGCAAACTTATGTGCTTCACAAAGTCCTATGTGGGCTTGTCCAAGATGACCACATGGTACCAGTACGGCTTTGTCCAGCCACAGGGCCCCAAAGCCAACATCCTGGTCTCTGGGAACGAGATCCGGCAGTTTTCCTCATCGCTGATGGAGAAGCTCAATATCACCAcgcgaggaggagaggagagcgcaGCGGAGGAAAAGGACGAGTACATCGTAGTGTTCAGTCGCTCCATCAACAGACTCATCCTGAATGAAGCGGAGCTGATCCTGGCGTTAGCGCAGGAGTTCCAGATGAGAGCGGTGACAGTGTCTCTGGAGGAGCAGACCTTCCCCAGTATCATCAAGGTCATCAGCGGGGCCTCCATATTGGTCAGCATGCACGGGGCCCAgctggtctcctctctcttcctctcccggGGGGCCGTCGTAGTAGAGCTCTTCCCCTATGCGGTCAACCCAGAGCAGTACACCCCTTACAAAACCCTAGCCTCTCTACCAGGCATGGACCTGCAGTATGTGGCCTGGAGGAACATGGTGGAGGAGAACTCTGTGGCCTACCCAGAGAGGCCCTGGGAGCAGGGAGGTATAGCCCACCTGGATAAGGAAGACCAGGAACACATCCTGGCCAGTAAGGAAGTGCCCAGACACCTGTGTTGCCGCaacccagagtggctctatcgCATCTACCAGGACACCATAGTGGACATCCCTTCTTTACTAGAGGCTCTCAGAGCGACAGTGAAAACCAGGCCCAATCTGAAGAAGGCCAAGCCTGCCAGCACGGTCCACCCAGGCCAGGTCAGAGAGCCCCAGTGCCAGACATCGGTCCAGGCCACCAACGAGGCCATGCTGACTGTGTCGTGGCAAATCCCCTGGAACCTGAAGTACCTGAAGGTCAGGGAAGTGAAGTACGAAGTGTGGATCCAGGAGCAAGGAGAGAACACGTACATGCCTTATATTCTCCCCCACCAGAACTATACCTTCTCTGAAAACATCAAACCATTTACGACGTACCTGGTGTGGGTGCGCTGCATCTTTAACAAAAACCTCCTGGGGCCCTTTGCAGATGTACTCACGTGCAGGACATAATTTGAGTTGATATTTACAGATGATCAGATGTTGGGGCTTTGgattattgaaggtgatgcaagaAAGGTtctgtataatttcagccagtagttttgaaagtagcgCTCACGAGACAAAATGGGTCCCAGAAAATGGTGCACAATTGTATACGACGTCATTCATTTTGTATGACATGTTACGTCCTGCACGATAAATGTATGTTTCCtgcaatatgttatgaatttgcaagtGCTTAAGATCTCGTTCAATCTCTTTTTAAAAGGAACTTCTGTGATTGAGGATTGTCTCCGATTTGAGGATAGTTGATATGATGTAATCTGTATCTAGGATGAGAGACTGTGCTGTTTGATGAGACAACCATGTCCTCACACAGAGCGTGAAATGCAGTAGAAATTCAATGGCATTTAGCATGGGACGAGGGAATACATGAGTCACGATTTAAGGATGCATTGTCTGTACCTGCAGAAAGTGCTACACAACATGTATTTTTGAGATATAGGAATTTCTTTAATATACTTATTTATGAGCAAAAATGTATAGTATAAATTCATGTATGTTTTTTTATTAGTCTTAAACACTGAACCTATCTATCTATACCTGTACTTATTTGAGTGTGTAATGTAGGTTTTCAGCAAAGCCCAGGTGGGACTTTAGGATGACTTGGTCTTGGTTTCATACTTGATTGGTTTGTGATTTGTTATACAGTTATCTGATAAATCACACCTTTGTGGCTTAGCCTACCCTCCTGCACAAAGTTGTAGCTTTGTCATGTTGCCTTTCTAATTGGCAATTTACATAATTGCAGAATGTTGCCAAaaccttaaagggatactgtGAGATTCTGGCAATtgtctacttacccagagtcaaaTGAACTCGTGGGTACCATATTTATGCCTCTGCgtgcagtatgaaggaagttagaagtagtttcgcgagccaatcctaactagcattagcacaatgactggaagtctatggataTCTGCTAGCTGGGTATCTGCTTCAGGCCTGGGAAATTCCAGTCCTCTGAgacctgattggtgtcacacttttccccCGATCCCTAGCAAACACATCTGATTTAAACTAATAGTTTTTTTAACTGAAGCTCATGATTAGTTGactattggagtcaggtgtgttagctggggcaaaagtgtgacaccaatcaggcccccgaggactggagttgcccaggctGCAGATACCCAtacacttccagtcattgtgctaacactaGTAGCgctagcaacttccttcaaaccacacacagagacataaaaagggtatctatgagttcatctgaccctgaggaagtagataaagggcttcattgccaaaatcccgaagtattcCTTTGAGAGAAACCAAAGTGAATTTGAAAATATGGTCACCAGTCTATAGTACCATTAAGTATGTGTTATTAGTTGTGATTTGGATTATCTTGTGCTTCATTGAGGCTTTAATATTTGCCATTAACTGTTTTGAACTATTGTGGCCCATGGATAATAAATTATTCCCCTTCTAGATTATTTGAGATATTAATTCAAGGCAGATAAAACTTTCAAAGAGTGTGTCCAGGAAAATATGTTGCCAGTTTTCTAAAGATGCTGACTAAAACATGCATTATTCATTCAAATGTAGTAGTCTTTTAAGAACAGGGTTCCTCTAAATGAAAATTAAGAGAATCTATTATCATGTATTTATGTCAAAGGTTCTGTTGCTGTGCGGTCACTAGATATGCAAGGGGTAGTTCTATTTCTTTCAGAAAAACTGGAGTTTCTTCAATCAGTTTCTTTGCCATTGCCCTGTGTGTCAAATGATAAATACAAAAAGGTTCATATCACTTCAGTGTCCCCATTACAGCAATTCTGAGTTCAATTGTCCTATTTTTTGTTATTCAGTCTACACATTTGCAGAAAATGATCAGAATTCCTTACTTACTATTAATGGGTACCATTTCTGATTGTGATCATTTACATTTTGCGCAGGTTATATGCATGCATAAACTTGACTATAATTAGCCTGTTATGCTTTTAATTTGAAA

Function

GO: NA

KEGG:

id description
K18207 POMGNT2, GTDC2; protein O-mannose beta-1,4-N-acetylglucosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149700 lncRNA downstream 41751 28904041 ~ 28936078 (-) True G129882
TU149699 lncRNA downstream 72287 28904041 ~ 28905542 (-) False G129882
TU149735 lncRNA downstream 89173 28877390 ~ 28888656 (-) True G129907
TU149732 lncRNA downstream 102611 28873492 ~ 28875218 (-) True G129904
TU149723 lncRNA downstream 112514 28863589 ~ 28865315 (-) True G129896
TU149861 lncRNA upstream 109976 29117887 ~ 29185848 (-) True G130025
TU149866 lncRNA upstream 142392 29150303 ~ 29172644 (-) False G130027
TU149864 lncRNA upstream 143067 29150978 ~ 29172644 (-) True G130027
TU149867 lncRNA upstream 152803 29160714 ~ 29196616 (-) False G130028
TU149870 lncRNA upstream 152803 29160714 ~ 29196616 (-) True G130028
XM_021557096.2 mRNA downstream 259318 28715392 ~ 28718511 (-) True LOC110485888
XM_021557083.2 mRNA downstream 263790 28706863 ~ 28714039 (-) True LOC110485879
XM_021557072.2 mRNA downstream 271672 28703683 ~ 28706157 (-) True LOC110485869
XM_036933650.1 mRNA downstream 444120 28475823 ~ 28533709 (-) False LOC110534614
XR_002467991.2 mRNA downstream 506335 28469709 ~ 28471494 (-) False LOC110485830
trnat-ugu-28 mRNA upstream 3809 29011720 ~ 29011792 (-) True trnat-ugu-28
XM_021557357.2 mRNA upstream 79506 29087417 ~ 29090611 (-) True LOC110486042
XM_021557494.2 mRNA upstream 453033 29460944 ~ 29470038 (-) False LOC110486122
XM_021557501.2 mRNA upstream 453033 29460944 ~ 29470038 (-) False LOC110486122
XM_021557508.2 mRNA upstream 453033 29460944 ~ 29470038 (-) False LOC110486122
TU149442 other downstream 499998 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 667097 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 827843 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 1211297 27766157 ~ 27766532 (-) True G129250
TU147564 other downstream 1699705 27271260 ~ 27278124 (-) True LOC110485245
TU150630 other upstream 861135 29869046 ~ 29878568 (-) True LOC110486376
TU151687 other upstream 1881782 30889693 ~ 30895983 (-) True c2h8orf37
TU151689 other upstream 1889115 30897026 ~ 30899564 (-) True trnae-cuc
TU152152 other upstream 2184508 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 2184555 31192466 ~ 31195186 (-) False LOC110486852

Expression Profile