RNA id: XM_036944522.1


Basic Information

Item Value
RNA id XM_036944522.1
length 9067
RNA type mRNA
GC content 0.54
exon number 10
gene id LOC110486020
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29060588 ~ 29081536 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acactagcagcaTCGCgagacccacacacactctcactcataGCATCATCACTGCTCTGCTGCACCACAGAGAGAGGCACGCTGAGcattcaccctctttctctctctctctctgctccttcctCTACTgcgcactctctctctgttcaccTTGGCTGCTGGGTGGTGTGGAGTTATTGTTGCGTCAGAACCAGAGAGATCCAGACAGCCATGCCGGGGGAGAGCTCTCACAGATCTGTCCCCAAAGAAAGACATCCGGAGCTTGGAGCAGAGCAGACAGGCTTGCCTGAAACAGACATGACCAGACATGCCTCCACTGACTCCACTCCTAGTGACAGTGGCTCCACCCCTAGTGACAGCGGCTCTAGTCCCTCCCCCAGCACCCCTCAGAAGCTGCTCCCATCATGCACCTCTCCTTTTGGGCCGCGGCTGGTCCGGGCCACGCCCAGCTCGTCCGCGACCCCGCGACCCCAGCCTGAAGGTTCCGACCGTCGCCACAGTAACACGATCCGGCTTAGCGGGACGTTTGGAGGTCACGGACCCTGTGGACGTCGCAGCGGACCCGTGAAGATGGAGAGaatcaagGTCCTGATGGGCTCAGAGGTGGAGAGCGACTACAAGGAGCCAGAGAACATGGACACACGGGTGGTGATGGGCCAGGAGGCCCTGCTCAAGACCAAGAAGACCCTGACAGGGAAGTGCCCTTGCAGGCAGAGCAGCCAGGCGATACCCCTGCCCGGAGGCCCAGTCTTGGAGGTCCCTAACCCTCCCTCAGAAGCACAGGCAGAGGCTGGGGAAAAGGCCCAACTGGACACAGGGCAGGAGAAAGACAATTCACCTCTGACCCCAAAGATGGAGCAAGAGCAGGAGAGAATCCCTGTCCTGCCCATTagccctctcctcacccctctcctaacCCCCCTcatccctgcctcccctccctcctcagaGCCAGTCACAGTGGATGTTAGTTTGACGGGCAGCTCAAGCCCTTTGGAGGCAGGGCTGTCTCCCTATGGTGAAATGTCTTTTGTTTGTTCCATGTATGCCATGCCCTCCCTGTCCGAGCCAGCCTATCCCCCTGCTATCCTGTCCTTCTCTGAGCCGGTCTATGCCGTGGACCCTCTGAGAGTGGGCGTTCCCTCATCCCTGGATCCTGACCTGTACTACACCGCCCCCTCCACCCCCATCAAGATggctcctcacccctcatacctcAAACATCGCTCTTACCCCGGctccccagcctctcccctcTCACAAAACACCCCCTCGGACAGCGAGGACCTGTGctcccccctcacctccccctctgGCTCCTACGTCACGGCGGAGGGGGGCAGCTGGACCTCTTCCACCTCCCCCTGCACCTCCCCCAATCTGCTCCTGGCAGAGGAGGTGCAGGAGGCACCTGCATGCTTTGTCAGCTCGCTGTCTGAAATCGGAGatgaggtgggagaggagaggggagctgtaggggagagggcagaggagaagggaggaggagcagcagagtGGCGATTCTGCCTTTATAAGGGTCTAGCAGAGACTGTGatcctggaggaggaggaggtgctgaGAGGGGAGGTGAGTGGGGGGGGGAGTGAGGAAGCGACAGTCTCAAGAGGTAGCTGTCGCCCCCGCTGGGTGACAGAGGACACTTCCCCATTGAGGAGCAGCAGCGGCAGAAGCACTGACTCccaggaagagggaggggagtcGGAGGGCTCGCTCTGCCCAGCAGAGGATGCTCTAGCTGGGGGACAGCAGTACTCTAGTCCCCTGCTGCAAAGAGGCCTGGAGCTGGAGCTGCAGGCCTGTGTGGCTGAGGAACTTTACCCTCCCATTACCAACCCAGAGGATGGAACAGGCTCCCCACGGTTGACCTCCATGTCCTTCCCCTTCGCCCCAGACATGGGGAACCTAACCCATCACACCTCCAGTGTCAACCCTGCCTCCCCCAAACTTCCCCTGGACACCTGCTCTCCAGATGTGTCAGACGGGGATAACTCCAGTCCATACGGAGAGATGGGTACCTTCCTTCTGTTTCCAGGCTCCTACAgtgatgatggagagatggaggaggaggaggaggaggaggaggaggaggagaggatgatcCCAGCCTCTCTGCTTAACTTTCCCCTCCACACCAGTCTCCTCTTTCAGGCAGACTCCATGGAGATCACTCTCTTCCCCACAGAGGAGGggaatgagggaggagagggaaatgaCAGGAACGAAGGGAACGATGTGGATGCATACGCGgccggagaggaggagggggacgtggaggatgatgatgaagatgatgatgaagaagaagaagtggaggctaaggtagagatagaggaggCTAAGGTAGAAATAGCGATAGAGGAAGAGGTTGATGAAGAGGAGGGTGAGGAtgttgaggaagaggaggatgagggtgaGGGTAAGGCTGTAAATGACCCAGCTGAAGAGGACAACTCGGCCTCCTTCCTTCATTCACTGTCGGAGACTTCCATCAACGAAGGTCTGGATGAGTCCTTCTGTTTCCATGATGACACTGACGACTCACTAGACTCCGCCTCTTATAATGGTGAAGAGGATGAGCGGCTGTACAGcacagagagacatgctgaaccaCCCACAGGACCACCCACAGAACCACACCAAGCCAAACCTCAGCCTGAAACTAGACCAGAGGCCCACAGCACTGAACTGTCTCAGTCCCAGAGCAGCCCTAGCCTAATCAATCCCCCAGGAGACAAAGAGCCCCGGCCTgaaccaccacaaccacaacctgCACTTGCACCTGCCCAACTTGCGGAATCAGCCCACCCCAAGTCCTCGAACAGCGGCAGTGGGAGTGAAATGGAGACCTCCTCAGAGTTCTCTgaccctcctgtcccctctccttctcaggaGAGCCCTTCTGTCTCTACCCTTACCCCTAAACCTTCTACAACCCCTTACCCTGTCTCGATTACCCCAAAGACTACCCCTGCTACCGTGTCAACCCCTAAAACCAAGCCtgcatctctctctaaccccaacacTAACTTTGCTCCTGCCCCTAATGCTAAATCTGCTACTGTCTGTACCACTAAGACTAACCCTGCTACAGCCTCAACCCCACAAAATAACTCTGCTACTGCCTCCACCCCCAAAACTAACCCTGCTACTGTTTGTACACTTGAAATGAACCCTGCTACGGTCTCTACCCCTAACACTAACAGTGCTCTTACCCCTAACGCTAAATCTCCTACGGCCTGTACCACTAACACCAACCCTGCTACAGCCTCAACCCCCAAAACTACCCCAGGTACATGCTCTACCCCAAACCCTACTGttactcctaacactaaccctgctgCTACAATCGAGGAGACAGCGTCCCACAGCAATCCTGTCACCCTGGCAACAGAAGCAGGGCAAGCCAAAGCAGCTGCAGAGGAAGTACAGGCTGGTACGGTGAGAGAGGAGGACAAAAGGAgcggtgaaaagagagagaaagacaaacagagcagtggggagagaggaaaggacaaACAGAGcggtggggagagaggaaaggacaaACAGAGcggtggggagagaggaaaggacaaacagagcagtggggagagaggaaaggacaaacagagcagtggggagagagggaaggacaaaCAGAgcggtggggagagagggaaggacaaaCAGAGCGGTGGGGAGAGAAGAAAGGACAAACAGAGCagtggggagagaggaaaggacaaACAGAGGGctgcggagagagagaaggatgaacaGAGTACAGAGACTTCAGACGAGGATcacacagagcagacagacagagactcatTCAAACTACTCATTAAGCCACACCTCTCTAAGTCAGACACACCCCGGCCTAAACAGAAGACCTCTGAGCCCCGTAAGCCACTCCCACGTGTGTTTGGGGTGGCAGCGGCTTCAATCCGGTCCAAACCGCTTCTGGTGTCAGTGCTGGAACTGGACCAGAAGAATGAGAACAGCAGCGCTGAAGGTGTGGACTCCCATCAGGTCCTTGAAGGGACCACTGCCACCAATGACCTGAACAAGGGGGTCCCTCTGCTCTCGTACCCGAAAGAGCCTAACCCCAGCAACATCCCTGTCTCCTCCTGCCCTGAGAGCTCACCTGACCTGGCTGAcaacctgtccctgacccctGACATCTGCCCATGTGACCCCGCCCAGGAGAACCTGAGGGAGAACACCCTGAGCACTGAGGACGGGGGCCCTGTGGCCCTGGGCTCCCCTCACACACCTCTGGCTGTCTCTCCCAAGAGGGAGAACTCAGAGACAGACgccggagggaggaggggggttggGGGCTGGGGGGCAGGGGAggcccaatctctctctctggggcaggGCTGTGGGTTGGAGGCACAGAGCCTGTTACTGTGTGAGGTGGAGGGGCATGCTGTTGGACAGACAATTGGACAGACGATTGGACAGACACTCTCCGGGCTGCCCAATGTCGGCACAGACGAGGATGAGGTGGATGATATAATGGGGGACGAAGAAGACAACAACAGCCTGTGTGGTCGGCCAGACAAGATGGCAGATGTTGAGCTTGTGGGAGAGGGAGTGCCAGAGTCCAACCTGTCCAGCTGGAGGTCCATCGAGGAGATATcagaggcagggggaggagaggacggaAGCTCCCAATTCCCAGAGGATGATATCAGCAACCTGCAGAGTCGCCCAGAAAACAAGGAGcaggaaaacaacaacaatgacTCAGTGTTCCTATCCTCTGGAATGCCAACCTGTGTGACTCTGAATGCCCTGTCAGAGGAGGTGAGACACCAGAGCCAGAGTGTGAGTCTGAGGGCGTCCCTCTCAAACATACCACTCACAGAAGTGAGACCACAGGCTGCTGCAGCCTCCGATAGGCCAACAACATCAACGGACAGCTCAACACACCAATCAGACATAAGACAGGCTTCCTCATCCATGGAAAGCCCTGGGCGTGTCTCACCACCAGGGGGTAAACCACAGACCGTTTCAGACCAGAGCTCTGGTTCAGTAGAGGCAGCCATTTCCAGACCCAACAGTAACACAGATATTAACCCAGCAGTCAAACAGGCAGACCTTGCCATATCTCTGCTGGGTGGGGCATTTGGATCCTTCAGTCATAAAATCAGACCAAGCAACTCCAAGTCAGGCAGACTGCCCCAAGAAACTTCCCCATCAATGAGGAAAGACACAGTAGAGAATGTCCAAGTCTCCCAAGAAACTTCTCTCTCAGTGGGCAAAGACACAGTAGAGAAGGTCAAAGTTTCCCAAGAAACTTCCCCATCAGTGAGCAAAGTCACAGTAGAGAAGGTCCAAGTCTCCCAAGAATTGTCCCTATCAGTGGGCAAAGACACAGTAGAGATGGTCCAAGTTTCCCAAGTATTTCCCCCATCAGTGGGCAAAGACACGGTAAAGAATGTCCACGTTTCCCAAGAATTCTTCCTATCATTGGGCAAAGACACAGTAGAGAAGGTCCACGTTTTTCACGAAACTTCCCCATCAATGAGTAAAGACACAGAAAAGAAGTTTCAAGTTTCCCAAGAAATTTACCCATCAATGAGCAAAGACACAGTTGAGAAAGTACAATTTTCCCAAGAATGTTCCCCATCAGTGAGCAAAAACATAGTAGAGAATGTCCAAGTCTCCCAAGAAACTTCCCTATGGGTGGGCAAAAACACTGTAGAGAAGGTCCAAGTTTCCCAAGAAACATCCCCATCTGTGAGCAAAGACACAGTAGAGAAGGTTCAAGTATTCCAAGAATCGTCCCTATCAGTGGGTAAAAACACAGTAGAGAAAGTCCAAGTTTCCCAAGAAACTTCCCCGTCAGTGAGCAAAGACACAGTAGAGAAGGTCCAAGTTTCCCAAGAAACATCCCCATCCGTGGGCAAAGACATAGTAGAGAAGGTCCAAGTTTCCCAAGAAACTTCCCCATCAGTGAGCAAAGACACAGTAGAGAAGGTCCAAGTATTCCAAGAACCATCCCTATCAGTAGGCAAAGACACGGTAGAGAAGGTTGAAGTTTCCCAAGAAATTTCCCCATCAATGAGCGAAGAGATAGTAGAGAAAGTACAATTTTCCCAAGAATGTTCTCCATCAGTGAGCAAAAACATAGTAGAAAATGTCCAAGTCTCCCAAGAAACTTCCCCATCAGTGGGCAAAGACACAATAGAGAAGGTCGACATTTCCCAAGAAACTTCCCCATCAGTGAGCAAAGACACAGTAGAGAAGGGCCAAGTATCCCAAGAATCGGCCCTATCAGTTGGCAAAGACACAGTAGAGAAGGTCCAAGTTTCCCAAGAAACTTCCCCATCAGTGAGTAAAGACACAGTAGAGAAGGTCCAAGTCTCCAAAGAATCTTCCCTATCAGTGGGCAAAGACACAGTAGAGAAGGTACAAGTATTCCAAGAATCAGCCCTATTAGGGGGCAAAGACACAATAGAAGAGGTCCAAGTTTCCCAAGAAACTTCCCCATCAGTGAGTAAAGACACAGTAGAGAAGGTCCAAGTCTCCAAAGAATCTTCCCTATCAGTGGGCAAAGACACAGTAGAGAAGGTACAAGTTTCCCAAGAAACTTCCCCATCAGTGAGTAAAGACACAGTAGAGAAGGTCCAAGTCTCCAAAGAATCTTCCCTATCAGTGGGCAAAGATACAGTAGAGAAGGTACAAGTTTTCCAAGAAACCTCCCCATCAGTGAGTAAAGACACAGTAGAGAAGGTCCAAGTCTCCAAAGAATCTTCCCTATCAGTGGGCAAAGATACAGTAGAGAAGGTACAAGTTTCCCAAGAAACCTCCCCATCAGTGAGCAAAGACACAGTGGAGAAGGTCCAAGTTGTCCAAGAATCTTCCCTATCCCTATCAGTGGGCAAAGACACGGTAGAAAGTGTGAAAAAGCTCTGTTCCCAGCCTCAGCCAGAGGAGACAGAGCCACAGACGATGAGCCAAAGAGAGGGTGGTGGCGGTCAGGCGACTGATAGGCACATTGACCAACTAAAGATGAGCGTGGCCTTAGAAGGGCAGGAGAGCAGTGTTTATATTTCAGGGGAAagtgaggtgaaggagagagcagaggagagattCTCTCCAACAGAGAGCATTCCAGAACCTGCACAGCGTCAGACACCTGAGGGAGAGCTGAGCACAGAGAAAGCCATCACTCCTCCTCagccagagaggagagggaagcagagaaaGCAGAGCAGAGACAGACCCAGTCAGCTGCTCAGACAATCTACATCAGGCCCTGGGTCTACTGATCAACCACAGAAACCCTCTCTCGCTACCAAGACCCTAGCAGACACCTCCCCACCAGGGAAACAAAAGAATACGAACACGAGGGGACAAAAATCTGTTGCATATACCAGACAGAGGACACCTGTGAAGGGCAAACCTGAAGCAGAGtccgggaggagaggggaaaacagaaacgTCTCCGTTGCCCCGACTCCCCCTAGTCCTACCAACCTCTGCCCTATAGCTCCCACTCTCCTAGTCAACCAGGAAGTGAACACGGAAGTGCACCAGATAATGCTTGATAACAGGCCGCTGCCTGGCTGCCAGACAGAAAGCAGGAAGGATATCAACGATAACAATGTGGGGAGTGGCCATGCCTCCCCTACAGAACAGAATaggtcctcttctcctccacctcttccctcctcctctcctcctcacctctcattctctcctctttcctcatctcccccacctcttccctcctcctctcctcctcctctctccccctctactctctcctcctctcctcctcccagctcCTTCGTGATGCCGCCAGATGAGGACCTCCCCACTCCCATACAGGAGTCCCAGCCTCTCGTCACCCCACTCCTAGACACCCAGCCTCAATCAATCAATGTTCAGGCAGCCTCTGCAACCCTTTCTACTACCCCTAACGCCCTTCCTAAGCACCCCCCTATACCCACCGAAAGTGTCCCTATGTCCCCTACCCCCTCCTCATTTCCATCTCCATCCACGTCAGCCCTGGCCTCAACCCCCAGCTTTACCCAGCCCACCCAGGAGTCTCTGCCACGGCTGGAGGCTCCAACCACAATGCCTGTCCTCGGCATCCGCAGGCAGGTCCAGCCCCAACCAAACCTCCTCACCAAGCCCAACAGACAGGTCAAGACAGATGGGATGGATACAGACAGTGATGACGATGCCACTGCTGTTCCTCTACGACATCACATGACTCAGCCAAGGGGGACTGTGGGAAACCCTTCTCATAAAGAGTCTGGCTCCTCCAATCAGCGAGAGATACTGCTTCACTCCTCCTGCCAAAcaactgagagacagacagactgtccaATCAGCCACAAGGATTCACAGGAGCTGGACCTGTCCTTCAAATACAACTTGGGCTCCTGCAATGAGTCGGAGAGTGACGGATCAGTGCCAGAGTTGGAAGAACCAGAGGGGGTGCCACTGAGATCCTCAGAACCCCAGcccatcTCTCCTGCTGATGAGGGGATAAACAGACCTAAGCAGAGCCGCAGTGAGAAGAAGGCCCGCAAGgccaTGGGTAAGCTGGGCTTGCGGCCGGTCCACGGTGTGACCAGGATCACTATAAGGAAGTCGAAGAGCATCTTGTTTGTCATCAGCAGACCTGACGTCTTCAAGAGCCCCGCGTCAGACATCTACATCGTCTTTGGAGAGGCCAAGATAGAGGACCTGTCTCAACAGGTGCACAAGGCAGCGGCAGAGAAGTTTAAGGTCCCGGTGGAGCCCTCCCCCCTGGCGCCACCTGCACCACCCAGCCTCACCATCAAggaagagagcgaggaggaggagGTGGACGAGGGAGGTTTGGAGCAGAGGGATATAGAGCTGGTGATGGCCCAGGCTAACGTGTCCCGTTCTAAAGCTGCCCACGCCCTCAGACACAACACCAATGACATCGTTAACGCTATCATGGAACTGACAATGTGAGAGGACCCCCACCAAGCATAAATGCCACAGTCACATCTGTATCGCTGCTATGTTGCATTCTCCTTACCTGCTAATAAACAGTCTGTTATAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148507 lncRNA upstream 195413 28864296 ~ 28865175 (+) True LOC110485935
TU148539 lncRNA upstream 208779 28851577 ~ 28851809 (+) True G128813
TU148354 lncRNA upstream 287006 28768219 ~ 28773582 (+) True G128638
TU148482 lncRNA upstream 341853 28712992 ~ 28718735 (+) True G128760
TU148468 lncRNA upstream 366621 28693692 ~ 28693967 (+) True G128747
TU148849 lncRNA downstream 273936 29355472 ~ 29356526 (+) True G129093
TU148855 lncRNA downstream 285438 29366974 ~ 29367331 (+) True G129099
TU148906 lncRNA downstream 391746 29473282 ~ 29473490 (+) True G129149
TU148908 lncRNA downstream 392717 29474253 ~ 29474520 (+) True G129151
TU148910 lncRNA downstream 394236 29475772 ~ 29475990 (+) True G129153
XM_021557298.2 mRNA upstream 6045 29038928 ~ 29054543 (+) False LOC110486009
XM_021557306.2 mRNA upstream 6045 29038928 ~ 29054543 (+) True LOC110486009
trnat-ugu-29 mRNA upstream 39097 29021419 ~ 29021491 (+) True trnat-ugu-29
XM_021557264.2 mRNA upstream 109353 28931988 ~ 28951235 (+) False LOC110485990
XM_021557254.2 mRNA upstream 129487 28914821 ~ 28931101 (+) False LOC110485980
XM_021557368.2 mRNA downstream 69341 29150877 ~ 29161809 (+) True LOC110486049
XR_002468027.2 mRNA downstream 83262 29164798 ~ 29171119 (+) True LOC110486065
XM_036944551.1 mRNA downstream 90562 29172098 ~ 29196640 (+) False LOC100136336
XM_021557405.2 mRNA downstream 90564 29172100 ~ 29196640 (+) False LOC100136336
XM_021557416.2 mRNA downstream 90575 29172111 ~ 29196640 (+) True LOC100136336
TU148590 other upstream 79300 28939899 ~ 28981288 (+) True G128853
TU148570 other upstream 116198 28932056 ~ 28944390 (+) True LOC110485990
TU148197 other upstream 512673 28250842 ~ 28547915 (+) True G128490
TU148132 other upstream 971143 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 1343425 27716482 ~ 27717163 (+) True G128185
TU148818 other downstream 396081 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 403097 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 518490 29600026 ~ 29641096 (+) True G130308
TU150246 other downstream 604431 29685967 ~ 29693851 (+) True LOC110486279
TU150298 other downstream 708040 29789576 ~ 29789831 (+) True G130414

Expression Profile