RNA id: XM_021557368.2


Basic Information

Item Value
RNA id XM_021557368.2
length 2661
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110486049
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29150877 ~ 29161809 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagcaaaaacACACCGCTCCTCTTCCAACAAAGTTTCCAGCTTGGCAGAGAGACTAATCCCTTCCCTCCTCAGACCAGGAGCGCAGACACAAATAGAGACTCAGTCTGTAgtatctcagtcagtcagtcaggacttTAATCTGGATAACTCAGAGGATCTGCTCCAACTCTGAATACTATTGTTTTGGGACATGTAATGCAGAAAACATTTCATTGCAGGATTTCAACTACAGTAAGCTGTCCTAGCATTGATTGACAGTGCTCTGTCTGGACAGTACTGTAACTCCATCTAGAGGTGTCTGCTGAAGAACTTAGCGAAGTTCCTGCGAGCTCCATTTATGTGAATGTACTTTTTCTGTGATTGAAACTTCAGGAAGGCATGACGGGtcaggagaggagtgaggagaagagtGAGTGTGTGTCCCTGTCTCCGATGATGGAGGCTGTCCCTGCCCCACCTGAgagtgagagggtgtgtgtgtttgggacgGGGGACCTGGGGCGCTCTCTGGGCCTGCGTCTGCTGCAGGCGGGGTACGGTGTGGTGTTCGGCAGCCGACGCCCCCACAGCCGCAGCAGCCTCCTACCCCACGGAGCACAGGTCCTGGGTCATGCTGCAGCTGCTCAGTCAGCCCATCTGATCTTCATCGCTGTCCAGAGAGAACACTACGACTTCCTGGTACCACTGGCCAATCAGCTGAAGGGAAAGGTGTTGGTGGACCTCAGTAACAACCTGAGGAAGAATCAGTACCCAGAGGCCAACGCAGAGTACCTGCAAAGTCTGGTTCCTGGAGCTGAGGTGGTTAAAGGCTTCAACACCCTGTCGGCCTGGAGTCTGCAGAATGGACCTTCAGATGCCAACAGACAGGTGTATATCTGCGGGGAAAGTGTGGAGGCCAAGCAGGCAGTGATAGCGGTAGCCACCAAGCTGGGTTTCAGTGCCCTGGACCAGGGATTTCTCTCAGTGGCCCGGGAGCTGGAGGACTTCCCCCTACAGCTGTTCCCCCAGTGGAGGCTCCCCCTGCGCATCTCCATTGGCCTCAGTGCTGCCTTCTTCTTCTACCTACTGATCAGATACGTCATCTATGCATACGTCACCCAGGGCGAAGACATCTCCTTCAGAATCATGGTCTCACTGGCCAACCAGgTGTGTCCCATCGTGTCTCTGATCATGCTGTCTCTCTGTTACCTGCCTGGTGTCCTGGCTTCCTTCCTGCAGCTCTACAGAGGCACCAAGTACAGGCGCTTCCCTAATTGGCTGGATCGCTGGATGCTGTGCAGGAAACAACTGGGTCTACTGTCGTTGGGGTTCGCCTTTCTGCACGTGCTCTATACACTGATCATACCCATACGGTACTCTGTGATGTTCTGGGTCACtgaacacactgtctctgtgATCAGAGAGAACAGGACCACAATGTTTGATACTACAACAGCTTGGCATGACGACTCCTACTTGTCCCTGGGAATTCTGGGATTTGGCCTGTACGTCCTATTGGGAATCACATCTCTTCCCTCCGTCATTAACGCTCTCAGCTGGAGGGAGTTCAGCTTCGTACAGTCCAAGCTGGGTCACCTGACTCTGCTGTTGTGTACGGCGCACACCTACCTGTACGGCTGGAACAGATTCCTGAGTTCCTCCACCTACAAGTGGTACACCCCACCGGGCTACATGCTGTGTCTGGTGCTTCCCTCTGTGGTGCTGCTACTCAAGCTGCTGCTCATAACCCCCTGTGTGGACCGAACCATCACCCGCATACGACAGGGCTGGGAGAGGGGGGCAGATCAGAGGAACCCTAAAGACAGCCAACCACTGATACcttagaggacacacacacacacacacacacacacacaaaataacaccCTCAGTGTGATGACAGCTTTGTCTTTGAGGCATGAACTCTTGTTTCTTTGCTATTGTACCCTCAGAGGTTGGCTACCATTCAAtcatcgtttgccatgtttctgggATCAAAAACCAACAATAACATTTAATTGATATGCAGTCGTATTTATTTTTATATGACACTGtaaacattgttgcatttaatGCATATATTTTCAACCGTATGTTAACCAGACATGAGTTTTCTCTCTTACGTAAAGAGAATGGTGAAAGCTCTTTCTCTCTTATATCCTCTCTCTTACTGTACATCCTCTCTCTTCTTTGACTGACTGTACAGTTATCCCCGGATGAAACACAGGTTTCAGAGACatataaatgtttttaaatgtatattttgtgTCTGTCTCATACATCTCCAGGGGCAGGTCAGACACATAAAAACACATCTATCAGTGTGATCCTCTCTGGGGCAGAGTGTTATTATTTCCTCCAGAAAACAGACTCTCTGAAACCCAGCAACAGGCTTCCCTTTCATCACTAGATAGACAGAGTGGCCCACAGTGTCTTCTGTTATGGGGAGCACTTCCATTTGTTCTGGATATAGCTGGTTGTTTGTGTAGATGCCAAATACCTAAATACATAGATTAACTTTTAGGTGCACGCAGAAAGACATATTCCCAGAAACAGCTTGTACCAACATTAAAAATACAGGAAcaatgtggaaacaatgttgattcaaccagtgtctGACAAGTGGGATCTTTTGtaataattatttttatttcatcaataaaataaatgggTATATATTT

Function

GO: NA

KEGG:

id description
K19876 STEAP4; metalloreductase STEAP4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148507 lncRNA upstream 285702 28864296 ~ 28865175 (+) True LOC110485935
TU148539 lncRNA upstream 299068 28851577 ~ 28851809 (+) True G128813
TU148354 lncRNA upstream 377295 28768219 ~ 28773582 (+) True G128638
TU148482 lncRNA upstream 432142 28712992 ~ 28718735 (+) True G128760
TU148468 lncRNA upstream 456910 28693692 ~ 28693967 (+) True G128747
TU148849 lncRNA downstream 193663 29355472 ~ 29356526 (+) True G129093
TU148855 lncRNA downstream 205165 29366974 ~ 29367331 (+) True G129099
TU148906 lncRNA downstream 311473 29473282 ~ 29473490 (+) True G129149
TU148908 lncRNA downstream 312444 29474253 ~ 29474520 (+) True G129151
TU148910 lncRNA downstream 313963 29475772 ~ 29475990 (+) True G129153
XM_036944522.1 mRNA upstream 69341 29060588 ~ 29081536 (+) False LOC110486020
XM_021557318.2 mRNA upstream 69341 29060590 ~ 29081536 (+) False LOC110486020
XM_036944511.1 mRNA upstream 69341 29060590 ~ 29081536 (+) False LOC110486020
XM_036944537.1 mRNA upstream 69341 29060590 ~ 29081536 (+) True LOC110486020
XM_021557298.2 mRNA upstream 96334 29038928 ~ 29054543 (+) False LOC110486009
XR_002468027.2 mRNA downstream 2989 29164798 ~ 29171119 (+) True LOC110486065
XM_036944551.1 mRNA downstream 10289 29172098 ~ 29196640 (+) False LOC100136336
XM_021557405.2 mRNA downstream 10291 29172100 ~ 29196640 (+) False LOC100136336
XM_021557416.2 mRNA downstream 10302 29172111 ~ 29196640 (+) True LOC100136336
XR_005034523.1 mRNA downstream 69769 29231578 ~ 29232721 (+) True LOC118937130
TU148590 other upstream 169589 28939899 ~ 28981288 (+) True G128853
TU148570 other upstream 206487 28932056 ~ 28944390 (+) True LOC110485990
TU148197 other upstream 602962 28250842 ~ 28547915 (+) True G128490
TU148132 other upstream 1061432 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 1433714 27716482 ~ 27717163 (+) True G128185
TU148818 other downstream 315808 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 322824 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 438217 29600026 ~ 29641096 (+) True G130308
TU150246 other downstream 524158 29685967 ~ 29693851 (+) True LOC110486279
TU150298 other downstream 627767 29789576 ~ 29789831 (+) True G130414

Expression Profile