RNA id: XM_036944551.1


Basic Information

Item Value
RNA id XM_036944551.1
length 2177
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC100136336
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29172098 ~ 29196640 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATGGGCTttcctgcccacacacacacacacacacaaacaagcaaaaCCCCTCCAACGGAATTTCCACCTTGGCAGAGAGACTactccctttcctcctccctccaggaGCACGCCCAGACACAAATAGAGATTCAGTCAGTCGTGTCTAGAGGTGTCTGCTATAGAACTTCGCGAAGTGAAAGGGACGTTCATCCTGCGAGCTCCATTTATGTGAATATACTTTTTCTGTGATTGAAACTTCAGGAAGGTATTTTAAACTCTTTGGTCTTTTTGACACTTTCTGTTGATTCTATCTACGACTCAAGGAGGTCTTTGCCTGTCTCTGTTCAGGCATGACGGGtcaggagaggagtgaggagaagagtGAGTGTGTGTCCCTGTCTCCGATGATGGAGGCTGTCCCTGCCCCACCTGAgagtgagagggtgtgtgtgtttgggacgGGGGACCTGGGGCGCTCTCTGGGCCTGCGTCTGCTGCAGGCGGGGTACGGTGTGGTGTTCGGCAGCCGACGCCCCCACAGCCGCAGCAGCCTCCTACCCCACGGAGCACAGGTCCTGGGTCATGCTGCAGCTGCTCAGTCAGCCCATCTGATCTTCATCGCTGTCCAGAGAGAACACTACGACTTCCTGGTACCACTGGCCAATCAGCTGAAGGGAAAGGTGTTGGTGGACCTCAGTAACAACCTGAGGAAGAATCAGTACCCAGAGGCCAACGCAGAGTACCTGCAAAGTCTGGTTCCTGGAGCTGAGGTGGTTAAAGGCTTCAACACCTTGTCTGCCTGGAGTCTGCAGAATGGACCTTCAGATGCCAACAGACAGGTGTATATCTGCGGGGAAAGTGTGGAGGCCAAGCAGGCGGTGATAGCGGTAGCCATCAAGCTGGGTTTCAGTGCCCTGGACCGGGGATTTCTCTCAGTGGCCCGGGAGCTGGAGGACTTCCCCCTACAGCTGTTCCCCCAGTGGAGGCTCCCCCTGCGCATCGCCATTGGCCTCAGTGCTGCCTTCTTCTTCTACCTGCTGATCAGAGACATCATCTATGCATACGTCACCCAGAGCAAAGACATCTCCTTCAGAATCATGGTCTCACTGGCCAACAAGGTGTGTCCTATCGTGTCTCTGATCATGCTGTCTCTCTGTTACCTGCCTGGTGTCCTGGCTTCCTTCCTGCAGCTCTACAGAGGCACCAAGTACAGGCGCTTCCCTGATTGGCTGGACCGCTGGATGCTGTGCAGGAAACAACTGGGTCTTCTGGCACTGGGGTTCGCCTTTCTGCACGTGCTCTATACACTGATCATACCCATACGGTACTATGTGAGGTTCAAGGCCACTGAACGCACTGTCTCTGTGatcagAGAGAACAGGACCACTGAGTTTGACACGACGACGGCCTGGCGTGGTGACTCCTACTTATCCCTGGGGATTCTGGGATTTGGCCTGTACGTTCTGTTAGGAATCACATCTCTTCCCTCCGTCAGTAACGCTCTCAGCTGGAGGGAGTTCAGCTTCATACAGTCCAAGCTGGGTCACCTGACTCTGCTGTTTTGTACGGCGCACACCTACCTGTACGGCTGGAACAGATTCCTGAGTTCCTCCACCTACAAGTGGTACACCCCACCGGGCTACATGCTGTGTCTGGTGCTTCCCTCTGTGGTGCTGCTACTCAAGCTGCTGCTCATAACCCCCTGTGTGGACCGAACCATCACCCGCATACGACAGGGCTGGGAGAGGGGGGCAGATCAGAGGAACCCTAAAGACAGCCAACCACTGATACcttagaggacacacacacacacacacacacacaataacacccTCAGTGTGATGACAGCTTTGTCTTTGAGGCATGAACTCTAATTTCTTTGCTATTGTACCCTCAGAGGTTGGCTACCATTCAAtcatcgtttgccatgtttctgggATCAAAACCCAACAATAACATTTAATTGATATGCAGTcgtatttatttttatattacaCTGTAAACATTGTAGCATTTTAATACATATATTTTCAACAGTACACAAACCAGACACTAGTTTTCACTGGTGAAagctctctctatcactctctcataTTCTCTCTTACTGTACATCCTCTCTCTTCTTTGACTGACTGTACAGTTATCCCCGGATGAAACACAGGTTTCAGAGACATATAAACgtttttaaatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148507 lncRNA upstream 306923 28864296 ~ 28865175 (+) True LOC110485935
TU148539 lncRNA upstream 320289 28851577 ~ 28851809 (+) True G128813
TU148354 lncRNA upstream 398516 28768219 ~ 28773582 (+) True G128638
TU148482 lncRNA upstream 453363 28712992 ~ 28718735 (+) True G128760
TU148468 lncRNA upstream 478131 28693692 ~ 28693967 (+) True G128747
TU148849 lncRNA downstream 158832 29355472 ~ 29356526 (+) True G129093
TU148855 lncRNA downstream 170334 29366974 ~ 29367331 (+) True G129099
TU148906 lncRNA downstream 276642 29473282 ~ 29473490 (+) True G129149
TU148908 lncRNA downstream 277613 29474253 ~ 29474520 (+) True G129151
TU148910 lncRNA downstream 279132 29475772 ~ 29475990 (+) True G129153
XR_002468027.2 mRNA upstream 979 29164798 ~ 29171119 (+) True LOC110486065
XM_021557368.2 mRNA upstream 10289 29150877 ~ 29161809 (+) True LOC110486049
XM_036944522.1 mRNA upstream 90562 29060588 ~ 29081536 (+) False LOC110486020
XR_005034523.1 mRNA downstream 34938 29231578 ~ 29232721 (+) True LOC118937130
XM_021557438.2 mRNA downstream 173195 29369835 ~ 29418297 (+) False LOC110486083
XM_036944567.1 mRNA downstream 173195 29369835 ~ 29418297 (+) True LOC110486083
XM_036944640.1 mRNA downstream 228182 29424822 ~ 29478401 (+) False LOC110534631
XM_021557640.2 mRNA downstream 348604 29545244 ~ 29553946 (+) False LOC110486208
TU148590 other upstream 190810 28939899 ~ 28981288 (+) True G128853
TU148570 other upstream 227708 28932056 ~ 28944390 (+) True LOC110485990
TU148197 other upstream 624183 28250842 ~ 28547915 (+) True G128490
TU148132 other upstream 1082653 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 1454935 27716482 ~ 27717163 (+) True G128185
TU148818 other downstream 280977 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 287993 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 403386 29600026 ~ 29641096 (+) True G130308
TU150246 other downstream 489327 29685967 ~ 29693851 (+) True LOC110486279
TU150298 other downstream 592936 29789576 ~ 29789831 (+) True G130414

Expression Profile