RNA id: XM_021557438.2


Basic Information

Item Value
RNA id XM_021557438.2
length 2556
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC110486083
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29369835 ~ 29418297 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATTGAACCAAACGTCACTGAGATAATGTAGACAGAAAATAGGCGGGAAAGATATGACGTAGCTAATTGACAGTCTGAACTCACCAATGGGCTGCCAAGCCTGAGCCCATACCTCAAGAACATTCTGGATTTGGACCAATCCACAGCTACGAGCGTTTTCGTCACTCAATACACATTTCCAAACAGCTGTTGTAAATAGACGAATGACATACTGCTAGCTAGTCTTTGATACCGGCAACAAGCATATATTTTTTCTAGATTTCACTACTTTCGTTATCCATTACAGGTGTTTGCCTCCTAACAATTGACTAAACGAAAGTTACCGGCAGTCAGACCTGAATTTAAACTGCCACCGCCTCAGCGCTCTTTGGAACATCAAAACGTGATGcatttaacgttagctagctaacgtagcaAATTGGTACTAACGAGTTAACGTTAGCAGGCTACTAGTAGCAAGGTAACGTTACGACTTGGACCAAGGGGAATTGGGCAGTTGGCTAACAGTCTAGCTCCTTAACTTATTGTTATCAATCTGGACAGCTGACCAGACAGCTAACTAGTTTACGCCCGCTGCTTTGCTGGAGAAGTCGGCCCACGCAAAGATAGCTGGGCAGTCGCGCCCACTTAacattagctaggtagctaactaacgttGATGCGCCTATCTCCCGCCTGTCCGCTGGTCAGACCGAGGAGATTGCCTTGTTACGGAGTTTCGTTGTGGCGGATGCCACCGGCCCCGTTTGCCGAGGGAAGCAAAGCACCAGTTCCTGGAAAGTCGAAGGGTAAACCACAACGCTAGCTAAGGTTAGCTATCCTACTCCAACCCGAACGGGACCGTGGCTGTGTACGTACTGACAGCTCTGTATTTGATtgtagttagctagccagctaaccgtTTGCCAGGGCTGTTGGACCAGTGTTATAGAGCGATGGGGGAGTTAAATAAAGAGGTTGTGGATCTAGTTTGGAAAAGACCAGGCAGTAACGGGGTGTCTGCTTCACTCTTCCGGAGATGGACCCAAGGGTTGGTCTTCAGTGAGACCGAACACACAGCACTGGAGCAGTTTGAAGGAGGACCCTGCGCTGTCATTGCTCCTATACAGGCCTTCCTTCTGAAGAACATCTTGTTTAACAGAGAGAGTTCTAACTGGAGACACATCACAGAGGAAGAGCAGAAAGCGGCCCTGTGTTCTACTCTGGCTGAGATCCTGGAACAGGCCTGCTCTACTTCCTCCACTACCTCCTTCTGCCTGGTGACCTGGGCCAAAGGACAGTGCCCCCACACTACCACTCATACACCCCTCACAGGGGGTCCAGAGACCAGCCAGCAACCCACTGCTTTGGCTGATGAGGATCTTGGCTTTGAGCGGTTTCACAGCATCCTCCAGAAGCGTATTGTGAAGTCATTATCAGAGCTTAGAGAGGAGGTGGTGTCTCTCTACGAAACCTGGAAAGGGCGCTGTGGAGTCCTGTTCTTCCTCTACTCTGTCATCCTCACCAAGGGGATAGTTAACATCAGGAATGAGATTGAAGATACTACAGAGCCTCTCGTAGATCCAGTCTATGGCCACGGCAGtcAGAGTCTGGTTAACCTGTTAGTGACGGGCCATGCTGTCTCTAATGTGTGGGATGGAGACAGGGAGTGCTCTGGCATGAagctCCATGGTATCCACAACCAGACATCTGTGGGCTTTCTCACTCTCATGGAGTCACTACGCTACTGCAAGGTGGGTGCGTTCCTGAAGTCTCCTAAGTTCCCTATATGGATCCTTGGCAGTGAGACTCATCTCTCAGTGTTCTTCGCCAAGGAGATGTGTCTGGTGGCTCCTGAGTCTCCATCTGAACAGGCCAGGAGAGTCTTCCAAACCTTCGACCCAGAAGatAACGGCTTTATTCCAGACTCTCTGTTGGAGGAGGTGATGAAGGCACTAGACCTCGTCTCAGAACCTGAATACTATGTGAGTCTGATGAAGAGTAAGTTGGATCCAGAGGGCTTGGGGATCGTGCTGCTGGCTCCGTTCCTCCTGGAGTTCTTCCCTGATCAGGATACTGGAATCCCAGACTCCTtccctgtctaccactacaatgGCCTGAAACAGTCCAACCACAACGAGAGGGTGGAGTATGTGCAGGGTACGGCCCTGGTCCTGGGCTTGGAGGACCCCATGGTGAGGACAGATGACACTCCAGTGAAGCGCTGCCTCCAGACCAAGTGGCCCTACATAGAACTGCTGTGGAATACTGACCGCTCCCCTTCACTTAACTAACTCGCTGCTAGGGTGGTAGAGGACTGACTGATCTCTACAGGAAAGAAGGCCACAAAGACTGAGACACACAGTACATGTGcactgctgcacacacacacagcaatttgCTCACTGTCCTGggcaggacaaaaacacacagaacatatgccattacacacacacttgacATACAGACACACTTGTTTACTGTTAATGCTGTTGTGTTTTACATGACTGTAAATGAAGTCACAGGATGTTTTTGGTTTGTTGTAAAAATCTGAATGAATTATTATTGTCACCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148855 lncRNA upstream 2504 29366974 ~ 29367331 (+) True G129099
TU148849 lncRNA upstream 13309 29355472 ~ 29356526 (+) True G129093
TU148507 lncRNA upstream 504660 28864296 ~ 28865175 (+) True LOC110485935
TU148539 lncRNA upstream 518026 28851577 ~ 28851809 (+) True G128813
TU148354 lncRNA upstream 596253 28768219 ~ 28773582 (+) True G128638
TU148906 lncRNA downstream 54985 29473282 ~ 29473490 (+) True G129149
TU148908 lncRNA downstream 55956 29474253 ~ 29474520 (+) True G129151
TU148910 lncRNA downstream 57475 29475772 ~ 29475990 (+) True G129153
TU148911 lncRNA downstream 57784 29476081 ~ 29476358 (+) True G129154
TU148901 lncRNA downstream 60415 29478712 ~ 29480636 (+) True G129145
XR_005034523.1 mRNA upstream 137114 29231578 ~ 29232721 (+) True LOC118937130
XM_036944551.1 mRNA upstream 173195 29172098 ~ 29196640 (+) False LOC100136336
XM_021557405.2 mRNA upstream 173195 29172100 ~ 29196640 (+) False LOC100136336
XM_021557416.2 mRNA upstream 173195 29172111 ~ 29196640 (+) True LOC100136336
XR_002468027.2 mRNA upstream 198716 29164798 ~ 29171119 (+) True LOC110486065
XM_036944640.1 mRNA downstream 6525 29424822 ~ 29478401 (+) False LOC110534631
XM_021557640.2 mRNA downstream 126947 29545244 ~ 29553946 (+) False LOC110486208
XR_005039452.1 mRNA downstream 175867 29594164 ~ 29594216 (+) True LOC118944146
LOC118936731 mRNA downstream 236578 29654875 ~ 29662028 (+) True LOC118936731
XM_021557732.2 mRNA downstream 260910 29679207 ~ 29685150 (+) True LOC110486269
TU148590 other upstream 388547 28939899 ~ 28981288 (+) True G128853
TU148570 other upstream 425445 28932056 ~ 28944390 (+) True LOC110485990
TU148197 other upstream 821920 28250842 ~ 28547915 (+) True G128490
TU148132 other upstream 1280390 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 1652672 27716482 ~ 27717163 (+) True G128185
TU148818 other downstream 59320 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 66336 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 181729 29600026 ~ 29641096 (+) True G130308
TU150246 other downstream 267670 29685967 ~ 29693851 (+) True LOC110486279
TU150298 other downstream 371279 29789576 ~ 29789831 (+) True G130414

Expression Profile