RNA id: XM_036944640.1


Basic Information

Item Value
RNA id XM_036944640.1
length 4344
RNA type mRNA
GC content 0.52
exon number 30
gene id LOC110534631
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29424822 ~ 29478401 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAGCGCGCTACCGCAGCGACAGGAGAGTCTGGCTACAGGCTGTAGAGGAgtttagagtgtgtgtgagtgagagcatCAAGAGATCTGACCCGgcggagagtgtgtgtgagtgcctaGTGTGGGAGACAGCGGCGAGAGCGCAACGCACGGGCACGCACAACTTGGGATAACTCACCTGGCTGGACAgaaacatctctctccctccatctcgccTATCATCTCTCTCCTTGCTAAGGGATTCGAGCGGTGTGATAGACTACTGGTCTGGCTGCGGGGAAGGTGTTAATGTGTGCCTATAGGATGTATGCATTTGGTGGGATGTTGTGTCGCGTGGTGTCGGTGCTATGGCCTGTCCTTTCGATTGTCTCGGGCTTCAACCTGCATGCGGAGCGCCCTGCGGTGTTCCGAGGACCAGAGGGGAGCTACTTTGGTTACTCCGTGGACTTCTACCGACCGACCCCCGAAAGCAGCACGTTGAGTGTGTTGGTGGGAGCGCCCAAGGCCAACACATCCCAGCCAGGCATCATAGAGGGAGGAGCTGTCTACTACTGTCCCTATCCCCTAAACCCTGACCCCACCAAGCAACCCTACAGCTGCACACAGATACCCTTCGACAACGCCAataACAGGATGATTAAGGTTAATGGCACCAGGGAGCCTCTGGAGTTCAAGTCACACCAGTGGTTTGGAGCCTCAGTTAGAACTCACAAAGACAAAGTGGTGgcctGTGCTCCTCTCTACCACTGGCGTACTGTGGTGAACGGTGAGAAGGACCCGGTAGGAACCTGCTATGTTGCCGTGCAGAACTTCAGCGCCTACGCAGAATACTCACCCTGTAGGACCAATGATCCAAACCCGGAGGGACAGGGTTTCTGCCAGGCCGGGTTCAGTGTGGACTTCACCAAGGAGGGGACACTGGTGGTGGGTGGACCTGGCAGCTTCTACTGGCAAGgtcagGTGATGACTGCAGGCGTAGCAGAGATATTGAATGGTTACTCTCTGAAAGCCGTGCTCAGGAGAGTCCCTGGAGAGAAACAGACCCACGCTGCAGCTGATACCCATGACGACAGCTacctagGTTACTCTGTGGCAGTAGGGGAATTCACAGGAGACTCAGAGCAAGaGCTGATAGCTGGTGTTCCGAGAGGGGCACAGAACTTTGGATATGTAGCTGTGATTAACTCCACTAATCTGACATTCATCATGaacttcacaggagagcagATGGCTTCCTACTTTGGCTATTCTGTGGCTGTTACTGACCTCAACGGAGATGGGTATGATGATGTACTGGTAGGAGCACCTCtctacatggagagagagagggagagtaaaccTAAGGAGGTGGGCCGTGTCTACCTGTACCTCCAGCACTCCCCGCTCACCTTCTCCGAGCCCCTTCTCCTGACGGGAACACACACCTTTGGACGCTTTGGCACTGCCATCGCCCCGCTAGGAGACCTCAACCAGGACGGATACAAcgACGTGGCAGTGGGTTGTCCGTTTGGTGGGGAGGACCGGAGTGGCCTGGTGTTGATCTACAATGGCCAGAGAGACCTGACGGCCCGCGGCCTAACCCTCAGCCAGGAGCTCTATGGAGCCTGGGCCTCCAGTAGTGGCCTCTCCGGCTACGGCTTCACCCTGAGGGGGGACAGAGACCTGGACAACAACCATTACCCTGATCTGATAGTGGGAGCATTTGGTAAAGGGGAGGTGTCGGTGTACAGggctcgTCCTGTAGTGTCAGTGGAGGCAGAGATGATCCTGACTCCTAGAATCCTGAACCCTGATGACCGATCCTGCCTCCTGACAGAATCTGATATCATGGTGACctgTCTAAGGGTAGATATTTGTGCGAAGGTGAGCGGTGTGGGGATCCCAGACTCTGTAGtcCTGAATGCAGAGCTGCAACTGGATTGGCTTAAAGGTGTGAGGGGCGGAGTTAAGAGAGTTTATTTCCTGGATTCCCATCAGCCCCAACACACAGGGGTCCTAACGCTTGGCCACAGCCGTCCTCACTCCTGCCTGAACTATACTGTCTACCTACGAggGGAGGATGAGTTTAGGGATAAATTGACTCCCATCTCATTGGCTCTGAACTACAGTTTAGCCCCTCCATCCAACCTGGACCTCCCCCCTGTCCTCAACCGCTACAGCAGTACCTTCCTGCAGGAACAGGCATATATTCTGCTGGACTGTGGGGAAGACAACGAGTGTATTCCAGACCTCCAGCTATCTGCAAGCATagaccgTACAGAGCTGGTGGTCGGGGATGACAACCTGGTCATGTTGACCATAAACGCGGTTAACGAAGGAGAGGGGGCATATGAGACAGAGCTACACACACTCCTACCCCCTGAGGCTGATTACATAGGAGTGGAACGCAGGATAGAGgcTCTATCCAGGTTGAACTGTGAGTACAGGATGGTGAATGACTCCAGACTCGTGGTGTGTGACCTGGGGAACCCTATGGTTGCCGGAACAGAAgtATCTGTAGGTTTAAGGTTTGCTGTCCAAAGGCTGGATGATGCCGGTCCTCACATTGACTTTGACCTACAGATCCACagTTCAAACAAAGACAGCTCCAAGAGCAacccagtcagtctgtctctctccatctctgccagAGCTCAGCTAGACCTGAGGGGgGTGTGTCATCCCTCTCAGGTGGTTCTTCCGTTTCCTCATTGGGAGCCCAAAGAGAAGCCGGTCAAAGAGGATGACGTAGGACCCCAGGTCACACACATCTAcgagCTCCATAACTCAGGTCCCAGTAGTATCCGGGAGGCGGAGCTCCAGGTGGGCTGGCCCTCTCGTTTCCGTGACGAACACCTGCTCTACGCTCTGGAGGTTCTGACAGTCGGACCAATCAGCTGCCGGAGCAACACCAGCCTCAACCCCCTGGGCCTACAGacatccTCTGTCCAGGACACTCCAGAACTGTTGGGCTTTCTGAGGAACAGTAGCTCTCCTCACCGCTACAGGCGAGCCACCAATGCTGCCCAGCCCTACAGCAGCAAGACCCTGaaCTGCAGTAACATCATTTGTCTAAGAGTTCTGTGTGTGGTCGGGCGGTTGGACCGTGGTCAGAGCGCTGTAGTCAAGATCCGCTCCCGACTCTGGGCTCACACCTTCCTCCAGAGACGTAACGACCCATACCTCCTCAACTCCACCGTGTCCTTCAGAGTGACGGCCCTGCCCTaccgcctccaaccctcctccttaCCCCAACACACCACTTCAatgGGTACACTGGTGCTTTGGGGAACTCCTGATGTGGCGTTTGCTATTCCTCTGTGGGTCATCATCCTAGCCATCCTACTGGGACTGCTGGTCCTGGCCATGCTAACACTGGCCATGtggaagTGTGGTTTCTTTGACCGGGCTCGGCCGCCAGCGGATGACGTGTCAGACCGTGAGCAGCTGACTTCTGACCAATTAGCAGACGCCTAAGAACACTCACTGGCACCATGGAGACCAGTTCCTGATTCGAGGAGGCTGTTTGGGATGAGTTCCACCTCTTGAGTGAAATTAAATGAGATCTGCAGGCAGACTGCAAACTCACAGATCAAAGGTTATTTACCCCTTTTAAAGCTGATCTGTCATCAGTGAGTGGACTGCAAACTCACAAACCAAAGGCTGAAGTACCATTAAGATTGGTATTCAAACGGCACCAGAGTGACTGGGAACCATGCACACAGACGGAAGGCCTCAAGACAATTTTGGACAAGTAGAATGGACTCTGGTTCTAACCCTGCTTGTAGTTGAATATGTTTCTATGCACCGCTTGCCTCTGTGGGTTAGACTACTTGGGGATCTGTATGGTTGGATAATTCAGTTGGAGTTAACCAGTCTGGCTAACTTCAAATGGAGTTACCATCTGATGTCAGTGACTTGGTGTCCGCCTGCTTTCACTGTTAAATACATTCCATCATTGATcaatcacacacatgcacacatacatgcgcacacacacgaatgcacacgcaaacacacgcatgcacacacacacacgcaaacacagggGGCTGTACAGTATATATCTATGGATGGTGTATGTGCAATATTGGGATATTCTGTGTGATACTGAAGCTTGTTTACACTGGTATTATTTTATTAGAACTTGATGTTCAAATTGTTTGTGTATATTGTTTATTTAGTATACTATTGTGTATGTGAGTGTTTTTGTTGGTATATTAGTGTATGTGTCTTCGGAAAGTAGAAgaacccttaactttttccacattttgtaatattacagccttatcctaaaattcaTTAAATCattattttccctcatcaatccacacacaataccccataatgacaaagcaaaaacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148855 lncRNA upstream 57491 29366974 ~ 29367331 (+) True G129099
TU148849 lncRNA upstream 68296 29355472 ~ 29356526 (+) True G129093
TU148507 lncRNA upstream 559647 28864296 ~ 28865175 (+) True LOC110485935
TU148539 lncRNA upstream 573013 28851577 ~ 28851809 (+) True G128813
TU148354 lncRNA upstream 651240 28768219 ~ 28773582 (+) True G128638
TU148901 lncRNA downstream 311 29478712 ~ 29480636 (+) True G129145
TU148903 lncRNA downstream 2565 29480966 ~ 29482856 (+) True G129146
TU148913 lncRNA downstream 7365 29485766 ~ 29486092 (+) True G129156
TU148914 lncRNA downstream 7871 29486272 ~ 29486741 (+) True G129157
TU148917 lncRNA downstream 10552 29488953 ~ 29489241 (+) True G129160
XM_021557438.2 mRNA upstream 6525 29369835 ~ 29418297 (+) False LOC110486083
XM_036944567.1 mRNA upstream 6525 29369835 ~ 29418297 (+) True LOC110486083
XR_005034523.1 mRNA upstream 192101 29231578 ~ 29232721 (+) True LOC118937130
XM_036944551.1 mRNA upstream 228182 29172098 ~ 29196640 (+) False LOC100136336
XM_021557405.2 mRNA upstream 228182 29172100 ~ 29196640 (+) False LOC100136336
XM_021557640.2 mRNA downstream 66843 29545244 ~ 29553946 (+) False LOC110486208
XR_005039452.1 mRNA downstream 115763 29594164 ~ 29594216 (+) True LOC118944146
LOC118936731 mRNA downstream 176474 29654875 ~ 29662028 (+) True LOC118936731
XM_021557732.2 mRNA downstream 200806 29679207 ~ 29685150 (+) True LOC110486269
XM_021557752.2 mRNA downstream 207454 29685855 ~ 29697686 (+) False LOC110486279
TU148590 other upstream 443534 28939899 ~ 28981288 (+) True G128853
TU148570 other upstream 480432 28932056 ~ 28944390 (+) True LOC110485990
TU148197 other upstream 876907 28250842 ~ 28547915 (+) True G128490
TU148132 other upstream 1335377 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 1707659 27716482 ~ 27717163 (+) True G128185
TU148912 other downstream 6232 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 121625 29600026 ~ 29641096 (+) True G130308
TU150246 other downstream 207566 29685967 ~ 29693851 (+) True LOC110486279
TU150298 other downstream 311175 29789576 ~ 29789831 (+) True G130414
TU151478 other downstream 1221781 30700182 ~ 30700623 (+) True G131491

Expression Profile