RNA id: XM_021557692.2


Basic Information

Item Value
RNA id XM_021557692.2
length 3144
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC110486243
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29579852 ~ 29599325 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACAAGTGTGTAACAAAGCTCTCAGCACAGCCAGACTCGCACACATTTAACACGCACTGTGCTCACATGAGGAAGTCCTCTTCAACAACAGATCCTTCCACATCCTCCGCCTCAATCTCCATCCAGGTATTCCAGCCGGTCCTGTTGAGAGGAGCACCCCCATCATGGCATATGGGAGCCTGGCCTGGAGTCTCTCTGCTCTACTGGGGCTTCTCCTGACCCCTTCACTAGGGTTGGAACCTCCACGGATCTCCTTCCCCCTTGAAAGCCCAGAGAGACCTCTTCCCTTATTCAGCCAACCAGACATTaaaaacaccaccacactgttgCTAAGTGACGACGGCTCCACTCTGTTTGTAGGGGCACAAGATGCTGTGCTCTCATTAGATGTCAGCCAGCCTGATGTCATAACCATGAAGACTAAGATGGAATGGAAGCCCCCTCCAGATGTTCTACACGAGTGTACCACTAAGGGCAAGAAAGAAACGACGGACTGTCCCAACTTTGTGCGAGTGCTGCAACCCATCAATGCCACCCACCTGTATGCCTGTGGAACATTTGCGTACAACCCTCATGATACCTATATGgaCACAGACACTCTCACCATGGCCAAAGTCCCCAGGAAGTACAATAACGGAAAAGGTTGCTGCCCGTTCAACCCATATCAAAGAAACACAGCCATCTCTGTTGatggTGAGCTTTTCACAGCCACGACAAATGACTTCCTGGGTAAGACACCAATGGTCTCCCGCCATCTCAGTAAAGATGGTCGCCCAGATGTTAGCCAGGATACTTCAGTGACCTTGAATGAGCCCACTTTCGTCAGTTCCGCATCTGACACCAGCGAGGGGAAGGTGTACTTCTTCTTCAGTGAAATTGGAAATGAGTACAGCTTCCTGGATGAGTTCAAAGTAGCGCGGGTAGCCCAGGTCTGCAAGGATGACATTGGGGGAGAGCGCATCCTGCAGAAACGCTGGACTTCCTTTGCTAAAGCCGAACTTCTCTGTCGGCCTCCCAAAGAGCTGCCTTTCAATATCATCCAGGATGTGTTCACCCTCGCTCCATCAGAGGGCTACTCCACACAAGATATTATTTTCTATGGTATCTTCACATCCCAATGGTCAGTGGCTTCAGGGCAGTCTGCTGTGTGTGCCTTTCGGCTTGGGGACATCAAAGATGTGTTTGCTGGGAATTACAAGATATTCCAAAACCACCAATGGAGTCCTCGCATGTACAAGACTAGCAACCTGGGCAAGTGTGGGTTGGCCAATGCCTCAGACACCACTCTAATGGCAGTCAAGGAAAGTTTCCTAGCCAGTGGAAGTGTGCGTCCGATAGGCAATGCACCAGTTCTCAACTCGCCTGACCAGCGCTACAGTCGGATTGCTGCACTACGGACAAAAGCAGCCAATGGACAGGACTACACCATACTCTTCCTGCTTAGTGAGTCTGGGTTTCTCCACAAAGCTGTGCTGTTGAACAAGGATACCCACATCATAGAGGAGATCCAAGTGTTCAGACAACCACAGCTGGTGAAAAACATACTTCTCTCCACCTCCAAGGGTGTGCTTTATGTGGGGACCTCTGAAGGGGTGACCCAGGTGCCTGTATCCCAGTGCTCGTCCTATAAGAGCTGTGCCCAGTGTGTTTTGGCACGAGACCCCCTCTGTGGCTGGGACCCTGCCAGAGGACACTGTGCCAGTGTGTCTGCCATTCCAGCCAATGCACGGCAGGATGTGGAGCATGGCAACGTGATGGAGTGTCAAGGTTCCCTCACAGCTAAACCTCTGCTAGTGGAGGTGCACGCACAGCTAAATGAAGTAGTGAGGTTGAAGTGTTCCAGATCCTCCAATCTGGCAACCCTGAGTTGGAAGTCCGCCAAAGCTAGCGCTCTGCCCCACCACCTCTTCTTTCACTCTGGAGATGAGAATCTGGTCTTCATGGCCACACCTGACACCTTCGGAATCTACCACTGCATCTCTGTTGAGAGGGGTTATGAGGAGACAGCAGCTATCTACACTGTGAGTTTCTCTCCTCAGGCCATTGATACTCCAGCCGTTCAATTTCGGATCACCACCACAGAGACTAAAGACCAGATGACCACTATGATGGAGATTCCAAGCGACACTGACCAGCTAGACCACATTAACTTTGGGGAGGATCCAGTCATCACCACAGACGTAACCACAACCGACAAGACTCCAAACACCAATTCCAGTACTGAGAAGCCAGAGGATATGACCCCAGACCCCCTTTCCAGCAGTGAGAAACCAGAAGACCACAATGAACCCTTAACAGCCAAGAATTACCATAGTGAATTGGTGGCAGTATCATTTctcctggctgtgtgtgtttgtgtgctagtGCTAGGAGGGCTCTATGGGTGCCACCTGCAGGGCAGATATAAATTGGGCCCATCGGACACTGCAGAGGGGGGATACAAGGAAGAGAATGACCCCCTGGAAGTCTCACCTCCCTCTATAAAGAAGGCAGAATGAATGGACTCAGAAGATATCtatcttcATCGAGAGTCAATTTTTTTCAACAGGCATTTGATGACATAACATCAGGTGGATTTAAGCTTGTTGAAGATTTATAAATAAGTAAATTAAAAAGTGTGTTTGGGAGGGGGGGTGAAGGGTAGGTTTATTTACACGTGGAGCCTATTTGTCTTCAACTTAAACAGACAGATAATGCACGTTTCTATTCATTTCAAATGAATACAATTTTTGTAATCCTACATTTCCTCAGCTGACATCTTTTTCTATAGGCTACAAAACAAGTGTCTTTATTTCTGTAGGAATGTTCATTCTCTTTTACTACGCCTACTATAATAAAAAGAAGAAATTACATTTCTGAATCTTTCACATCCCTTGGCTGTCACCAAATAATAGTGGACATGCATAAAGAATGCTGCCCCCAAGTACTTACCAAAAATGCCTCATTTCTCAGCTCTCCATCActgcttttaaaaaaaatctgcattAGCACAGTTAAAGATTCCAATTCTAGCTCATAGGCGGTAATTTGaaaaagtacagttgaagtcggaagtttacatacacttaggttggagtcattaaaactcgtttttcaaccactccacaaatttcttgttaacaaactatagttttggcaagtcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150443 lncRNA downstream 9077 29569180 ~ 29570775 (-) True LOC110486216
TU150472 lncRNA downstream 10869 29568651 ~ 29568983 (-) True G130567
TU150470 lncRNA downstream 13534 29566107 ~ 29566318 (-) True G130565
TU150469 lncRNA downstream 13820 29565808 ~ 29566032 (-) True G130564
TU150468 lncRNA downstream 14560 29564961 ~ 29565292 (-) True G130563
TU150573 lncRNA upstream 163046 29762371 ~ 29770692 (-) True G130657
TU150588 lncRNA upstream 190329 29789654 ~ 29789873 (-) True G130671
TU150590 lncRNA upstream 192639 29791964 ~ 29792173 (-) True G130673
TU150591 lncRNA upstream 193476 29792801 ~ 29793179 (-) True G130674
TU150592 lncRNA upstream 195027 29794352 ~ 29794580 (-) True G130675
XM_021557674.2 mRNA downstream 4500 29571712 ~ 29575352 (-) False si:dkey-7j14.6
XM_021557682.2 mRNA downstream 4525 29571721 ~ 29575327 (-) True si:dkey-7j14.6
XM_021557653.2 mRNA downstream 9041 29557303 ~ 29570811 (-) False LOC110486216
XM_021557662.2 mRNA downstream 15983 29557303 ~ 29563869 (-) False LOC110486216
XM_021618206.2 mRNA downstream 34973 29543049 ~ 29544879 (-) True LOC110533728
XM_021557720.2 mRNA upstream 3924 29603249 ~ 29639640 (-) False LOC110486252
XM_021557712.2 mRNA upstream 3924 29603249 ~ 29639641 (-) False LOC110486252
XM_036944807.1 mRNA upstream 10824 29610149 ~ 29639641 (-) True LOC110486252
XM_021557777.2 mRNA upstream 99334 29698659 ~ 29707941 (-) False plin6
XM_036944831.1 mRNA upstream 99336 29698661 ~ 29702700 (-) True plin6
TU149442 other downstream 1102021 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 1269120 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 1429866 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 1813320 27766157 ~ 27766532 (-) True G129250
TU147564 other downstream 2301728 27271260 ~ 27278124 (-) True LOC110485245
TU150630 other upstream 269721 29869046 ~ 29878568 (-) True LOC110486376
TU151687 other upstream 1290368 30889693 ~ 30895983 (-) True c2h8orf37
TU151689 other upstream 1297701 30897026 ~ 30899564 (-) True trnae-cuc
TU152152 other upstream 1593094 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 1593141 31192466 ~ 31195186 (-) False LOC110486852

Expression Profile