RNA id: LOC118936731


Basic Information

Item Value
RNA id LOC118936731
length 1538
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC118936731
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29654875 ~ 29662028 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGAGACATggtgcgcagagccggcgcaggatatcctgggccgtaATGTCTGTCGTCTGAtgaagaaggagaccaagTGGGCTCGTGCAGAGTTTGGGTGGGTTTTTGTTGGCCTATTCCTCGCCCCTGTGTACGGAATGACTGCACTGTTCATACAGAACCAAGGGCTGTGGTATTGCGTGTGTACCATGATCACCATAGCTTTCCTCTCAGCATTTGGCACGGGCCTCTCCATCTGCGTGCGTGCGAATGTTGTACTCATGATGCCAATGCTGTGTTCAATGAAGGGCAAGGacttcctcctgttcctcatCTTCTCCATGTTGGTCCAGGGCCCCATGACCAACACCCTGGAAAACTTTGACCGTGCAGCGGACAGCGTGGTGTGTGGGGCCGAACCTGCCACGAGCCAGACCCAGCAGGTACGTCTGTGGGCCATGCTTATTCTAGCACTGTCATTATTTGAAGACACTGTTAGTACAGTTACTGTATCTAACAATTTAACTCTCCAAATGAAGCCTTCCATTGATTTCTGTGCCCTCTGCCCCCTGTTACAGCTCGTTCCCTGAGAAACGTGTTACACTTCCTGGTCGGCATTGGCGAGGTGTGTAATGACAAACTGGGTACCCCCTGTAAGAAGTGTAACAAGCTATTTGATGATGCCCGTGATGACTGCATGGAGATCCTGTCTGTGTTCAACTTCCTTTGTCACATTGTGGATGGGTTCTGTCCCCTCTGTGGTCTCGCTTGAGTTGGTCAGCTGTTTTGCATCATCCCTTCTTACATTGTCGTCCACATGAAGACATAGATTGCTGCCCCAACCATAGCAGTTTTCGAGAAGATGAAGAAGGAGTTTGAGTTCAACATATCGGCCCCTATGCACTTTGACATGAATGTGAACAGCAGTCAGACGGTGCAACAGGTGTCATATGATGGAGGAAGTGTCGGTGGAGCTGGGACGTTTCTAGGACGTGATGGGTCTAATAGCCTACATAGGCCTCTTCCTTCTGCTGCTAATGTACCTACGgGCTGTCCTGTACAAACATAAGTACCTGCACCAGAATGACTTTGACAACACTTACATCACAGAGCAGTTTGAGGAGCTCAACGAGAGATTGGCTAGAGAGGGAAAACCCCCTGTCTAACCGCTCAGCCAGAGAGAGGCCCGCACCTACATCAGAGCATTCTCAGTGTACCTGACGGCCAGGGAGCAGTGGACGGCTGCCCTCAGCGCAGTGTCCATTCTCAGGCACATAGCCATAGGATGCCTGGGGTGGCGCTGGACCTGGTGGTCTTCTGGATGTTTGACCTGGTGCACTACCAAGCCCAGGGGGACATCGTGGCCAGAGGTGAGACACACCCCATCGTATTGGCAGTGGAAGTAAATGGCACAGGCAATGCCCTGGACATCTTCAAGGACATAGCAGCTGCCTTCGCCATTCTGCAGAAGGGCAGCATCACTGTTCTCAGCAAGAATTGTCTGATGAAGCCTTCAGAGCCAGACCACTCAGGATACATGCTCATAGGTAACACCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150172 lncRNA upstream 73465 29577661 ~ 29581410 (+) True G130297
TU150155 lncRNA upstream 99970 29554407 ~ 29554905 (+) False G130282
TU150156 lncRNA upstream 100020 29554490 ~ 29554855 (+) True G130282
TU150166 lncRNA upstream 107833 29546659 ~ 29547042 (+) True G130291
TU150165 lncRNA upstream 108359 29546285 ~ 29546516 (+) True G130290
TU150228 lncRNA downstream 1982 29664010 ~ 29671945 (+) True G130345
TU150215 lncRNA downstream 64523 29726551 ~ 29744867 (+) False G130335
TU150216 lncRNA downstream 64523 29726551 ~ 29732509 (+) True G130335
TU150294 lncRNA downstream 123098 29785126 ~ 29785365 (+) True G130410
TU150295 lncRNA downstream 123676 29785704 ~ 29785943 (+) True G130411
XR_005039452.1 mRNA upstream 60659 29594164 ~ 29594216 (+) True LOC118944146
XM_021557640.2 mRNA upstream 100929 29545244 ~ 29553946 (+) False LOC110486208
XM_036944640.1 mRNA upstream 176474 29424822 ~ 29478401 (+) False LOC110534631
XM_021557438.2 mRNA upstream 236578 29369835 ~ 29418297 (+) False LOC110486083
XM_036944567.1 mRNA upstream 236578 29369835 ~ 29418297 (+) True LOC110486083
XM_021557732.2 mRNA downstream 17179 29679207 ~ 29685150 (+) True LOC110486269
XM_021557752.2 mRNA downstream 23827 29685855 ~ 29697686 (+) False LOC110486279
XM_021557744.2 mRNA downstream 23840 29685868 ~ 29697686 (+) False LOC110486279
XM_021557850.2 mRNA downstream 103654 29765682 ~ 29768627 (+) True LOC110486333
XM_021557906.2 mRNA downstream 153752 29815780 ~ 29833805 (+) True LOC110486369
TU150186 other upstream 13779 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 169745 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 176745 29477617 ~ 29478130 (+) True LOC110534631
TU148590 other upstream 673587 28939899 ~ 28981288 (+) True G128853
TU148570 other upstream 710485 28932056 ~ 28944390 (+) True LOC110485990
TU150246 other downstream 23939 29685967 ~ 29693851 (+) True LOC110486279
TU150298 other downstream 127548 29789576 ~ 29789831 (+) True G130414
TU151478 other downstream 1038154 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 1086027 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 1629442 31291470 ~ 31293034 (+) False LOC110534710

Expression Profile