RNA id: XM_021557752.2


Basic Information

Item Value
RNA id XM_021557752.2
length 3685
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC110486279
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29685855 ~ 29697686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGagtttagctagccaacgtcgccATGGACCTCGCCTAATGCAACCGTCGTGATCGGGAGAAGCAGTTTATGCCTAGCTGGACTATCTTTGACCAAACTTCTTCCGTTACAATGTTTTTTTCAGTCTGAAAGAATATCCGGAGTAGCCTGCCCTGGTTTAGAACCTGCGCAAGATGAACCATGGCGGGCAAAGCGGCGGTGACTTTCCGTTTGGGCCGAACGTAGTGAAAGAATCGGGAACCTATGGAAATTGTGTCCTCTGTGGGTTAACTTTAAACCACGAGCGATATCCCCAACTTCTTCCCTGTTTGCACTCTATATGTCAAGCATGCCTGCCCCCAGACAATCCAGGGTTGCAGAAAGatctctctatctctccagcaTGTCCGTCCTGTGACCTGCCATTTAATATTCTGGAAGTCAAAGATAATCTCTTTATTAAGAACTCTTCCAACAAACTCTGGACTGGTAATGTCCAGTGTACCTGTTGTGAGGGGTTCGTGGCGAGTGGCTGGTGTGTGGAGTGTGGAGAGGCGCTGTGTTCGGAGTGTGTATCTGCACACAGGAGAGTGAAGGTGACGAAGGACCACACTATCCGGCTCCAACCCCCAACAGGAGTCTCTGCCCCCACAGTGTTTTGTCCCACACACAAACATGAGCCAATCAAGCTCTTCTGTTTGACCTGCGATCAGCTGACCTGTCGAGACTGCCAACTAATGGATCACAGGAACCACAGTTTCCAGTTCCTTCATGAGGCAATGGTTAGCCAGAAAGAGCAGCTTCAGTCCCTGGTGCAGAGAGTGAGGCAGCAGAGATTTGCAGTGAAGCAGAGCCTCCTGGACATGGATGGCAGATTGCTAGACATAACACAACTCAAGTCAAAGCTGAGGGAGAGCCTGAAGAGAATGCTTCTTGCCACTGTTCAACTCTTGAAATCGAGAGCCATGTCGCTCTACAGCAACATAGAGACAATGTGTAATGCCGAGGTGGCAGGGATCGAGACGAGACGGAGTGCGCTAAACAGACTGGGGCAGAGGCAGGAGTATGTTGCTGACTTTGCTGAGAAAGCCCTGAATGTGGAGGACTTCTTTGCCCTGCTCTCCTGCAAAGGGCAGATTGGGTCCCAGTTACAGCATCTCTTGACTCAGAGTACTGAGCCCCCAGGGACCATGCTTAAGTTGCAGCTGGTGATTACGGATGACTTCAAGAAACAAATAGCTTCCTTTGGTAAACTTTTGGGCGATATTGTTCCCTTTGCCCAATCACATGTTAGTCAAGACAACCCCCTGGAAAACCAAGAAAGACCCAATGCTCCCTCTGGCCAGACCTCTTCCAGTTCTCCTAACATGTCCATCCATTCTGTTCCCCCTCCACATAACCCTGTCCTCCAGCCCCCATGCCCTTCTTACACTGCCCCATCCAACCCCCTCAGTCAGCCCTCAACTTCCCAGCCCTCCACCTCCCGTGCTCCTCCTCCTTATCGCTCCTTGCCTGTCCACACCCCTTCAAACCTTCCATTGAGCCATCCTGTGACACCCCAGCCCTGCCCATCTACACTAGCACCATCTCACCCCTCCCTGAATATACATAATTCACCATTCTGTCTTCCATCGAACCCTGCCCAGCCATCACTTGTCCCTGAACTTCATGTCCAATCAGCGTTGGTCCCCACAAACCATGCCCAGCGATCCCCTGTTCAGCCTCCAACTTCCCCATCTCTCCAACCACTGATCGAAGCCACACCGAGACTTTATGGTATGTTCAAGGCAACTCCTCCACCTGGCCCTGGACGATCTCGGAGAGGTAAAGATGGAAAGTCCTGGACGTTCCACTCATACTCACCTGTAGAGATCTGCCTCCCACCTTctggctcctcctctcctgcagCCGTAGCTCAGCATCAGAATAGGAACTTTCCAGAATCGCAGCTACTGTGGATCCTCCATCAGCCTCCCTCTGTAAACCCCATCCCCGTCCTCCCGGTTAAAGCACTAGCAGACTCCCCCTGTGATAGAAGCCTGCCTCCTACTGGTCTGGCAGACCCTGACCTAAACTCTCAGGCCAGGGAGAACGAGCCTACTTCTACTGTCACTGAATTGGAGACTGACACAGAGGCAGACAGTGCTATCGAGTTGGAGGTCCCGTCAGCCTGGGGTGATAGAAAAGCAGCTGCCTGCTCGGACAGTACTTCTTCAGATCTGCCTTTCACAGGGACTTTGTCTACTGAGAGGACCTCTAATCATCTCTCTCACAGTGTCTTAACCCACACCCACCACCCCAAAGAAGAAACTGACATGGACCCTAACAGTAAACCCTATTCTGTGGGTAGGACCCGTACTGCCCCCCACAACAATAAAAAGATGGCTTATGACCAACAACATGAGGACGCTAAGGCTATCAGGTCACTTCATCGGCATGTGAATAACTGGAGAACTGAGCTGCCAACACGCATTAGAGTGCTACTGGAGGGCCCCTCTCCAAGCCCCAAAAGGACAGGTTTGGTGGAGGGCCCCTCTGTAAACCCCACCAGGACAGGTTCGGTGGAGGGCCCCTCTCCAAACCCCACCGGGACAGGTTTGGTGGTGGCCACTGAAATGCCAACCAGGCAACCCAATAACACAGAGCCACCGAGCTTGACCAATGGCAACAATGTTAACAACTCCAGGTACTGGCAACCAAGGGTCTTGATGTTTCGGCTACCCATCTCCACCCCCACTCCTGGAGGCGCTCTTCCTCAGTTCCTGCTCGTCCAAGGGGCCAGCAAAGATGAGATTATTCTGCAAGAGATTGCAGAAGACCACCAGTCCCATGGCGATGACATCACACCACCAGAGTCAGACAACCTCCTCTGGACTAAGGCCCTGTCTTCCCCAGAGAGTCCCCCACTGCTCCAGTATGTGACCTGTGCGGCCTGCCACACTGTTGGCGGTTCGCTATTCTGTGTGGAGTGTGGGAGGGGCTACCACCAAGATTGTCATATCCCACCCATTGGTCCTTCCTTCTGGGAGGAGTGGAAGTGTTCACTTTGTCAGGACCTGGCTGACACCACAGACCCCtacagtgatgacagacacaggACTATGTGCCTCAGCCTAGCAGACCAGAGGAAATGTGAGCATCTCCTACTCTTTCTAAGGTGTGAGAATGACAGAAACATCCTTTGCAGCATGGCTGAGCCCCCCTCAGATTCAATATGTCTTGACTCCATACATGGAAGGCTGCTACAACATCGATCACCCCCTTACCGTACCCCCTCCGAATTTGTCTCTGACGTCTGGGTCCTTTTCGACACCATGTTGATGAACTCAAAGGACCAGGAGTTGGTTGTCACGCTACGGGGCAGCTTTCAGAGGAAGTTAGGTGAAGTGTTTGGGACagctctccacccctccctcctcagCCACCCTAACAGCAGCTGGACTGAGACTGGGGAACCTGGGGAACCAACATCTGCAGAGTCTCTGAAGAGGATGAGGGAGTTGCTGAATATGACCAAAGTGCCAAAAGCTAAGAAACATCACTCCCAGGTCAGAGTTGAAACAGATGAAAATGAAACTaatgtgaaaaaaaataaaaaagatgcAGACTGAATAATGGCCATTGAAGTGGAGTCTCAGAAATGCTGTTAGTCAATTATATACAACTGATATTGTACTTTGTTTCATTAAATTAAAAACAAaaggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150228 lncRNA upstream 13910 29664010 ~ 29671945 (+) True G130345
TU150172 lncRNA upstream 104445 29577661 ~ 29581410 (+) True G130297
TU150155 lncRNA upstream 130950 29554407 ~ 29554905 (+) False G130282
TU150156 lncRNA upstream 131000 29554490 ~ 29554855 (+) True G130282
TU150166 lncRNA upstream 138813 29546659 ~ 29547042 (+) True G130291
TU150215 lncRNA downstream 28865 29726551 ~ 29744867 (+) False G130335
TU150216 lncRNA downstream 28865 29726551 ~ 29732509 (+) True G130335
TU150294 lncRNA downstream 87440 29785126 ~ 29785365 (+) True G130410
TU150295 lncRNA downstream 88018 29785704 ~ 29785943 (+) True G130411
TU150308 lncRNA downstream 101849 29799535 ~ 29799827 (+) True G130424
XM_021557732.2 mRNA upstream 705 29679207 ~ 29685150 (+) True LOC110486269
LOC118936731 mRNA upstream 23827 29654875 ~ 29662028 (+) True LOC118936731
XR_005039452.1 mRNA upstream 91639 29594164 ~ 29594216 (+) True LOC118944146
XM_021557640.2 mRNA upstream 131909 29545244 ~ 29553946 (+) False LOC110486208
XM_036944640.1 mRNA upstream 207454 29424822 ~ 29478401 (+) False LOC110534631
XM_021557850.2 mRNA downstream 67996 29765682 ~ 29768627 (+) True LOC110486333
XM_021557906.2 mRNA downstream 118094 29815780 ~ 29833805 (+) True LOC110486369
XR_005036167.1 mRNA downstream 203171 29900857 ~ 29914741 (+) False LOC110486403
XR_005036165.1 mRNA downstream 203173 29900859 ~ 29914741 (+) False LOC110486403
XR_002468068.2 mRNA downstream 203174 29900860 ~ 29914741 (+) False LOC110486403
TU150186 other upstream 44759 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 200725 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 207725 29477617 ~ 29478130 (+) True LOC110534631
TU148590 other upstream 704567 28939899 ~ 28981288 (+) True G128853
TU148570 other upstream 741465 28932056 ~ 28944390 (+) True LOC110485990
TU150298 other downstream 91890 29789576 ~ 29789831 (+) True G130414
TU151478 other downstream 1002496 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 1050369 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 1593784 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 1662750 31360436 ~ 31363213 (+) False eaf1

Expression Profile