RNA id: XM_021557777.2


Basic Information

Item Value
RNA id XM_021557777.2
length 3269
RNA type mRNA
GC content 0.52
exon number 5
gene id plin6
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29698659 ~ 29707941 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGTCAATAACTATGCTTGTATGGGCTTGGACCAGCTGGAAAAGAACTTTCCCGTCCTGCACCAGTCTACAGAGGAGGTATTGGGTCACCTGAAGGATGCCTTCTTTCTGACCCTGGATGACGTGCAACTGCGTGTGAATGATGAGCTGGACGGGATACAGGGGCGCTGGGACAAGCTGACCGATGCCACCTGGTACTACCTCCTGGCTCTGCAGGAGTCACAGCTGGGTCAGATAGCCACCTCGGGCCTGGATGACATCCTCACACGCTCAGAGGAGGCCATGGCCAAGTACATGCCCCTGACGGCTCCCCTGCGCctagagtgggagaggaggacacaGCAGTATGAGGATGAAGATGGGGAGGATGAGCCTGGGTTGTGGACGCGGTTCCGAGGCCTCCTGCTCTGTCTGAGCCTGCAGCTGTACCACCGCCTGCTGCAGCTCAGAAACAGGCTGGAGCAGGCCATGGGGATGCTACAGGATGCTACCGAAAGGATCGGCCTGAGCAGGTTGCTGGAGGTGGTAGGCTCTGTGCTCCAGAGACTACAGCTGCTCTACGTGTACCAGGTGTTGCGTCTAGACGTCGTGAGGAGGCTGGCCCTGGACCAGCTGAAGGCCCAGGTACGGGTCCTGGCTGAACTGGGGCCCGTCAAGCAGCTGTTGGGACTGCCTGCTCAGGTGCAGCTTGTGGTGGCTGACCTGCAGGAGCTGGGCAAGATCCTACTGCAGCTGCTGGTCAACAGCACCCCTCTCTACAACATGctcCAGCAGCCAAGTGATCAGGATGTGGAGGACTTCCTCAACCACCAGGAATCCATGTCCTCTGACACCACTCGCCGCAGTTCTGCCAATAGCCTCTTTCTCAAGGCCATGGACGGCCGCCCACACAAACGCACAAGCTCGTATGCCCGCTCTCAAAGGGGCTCAACCAGTGCCCCCAGTCCAGCCCCAGCCAAATCGCCCAACAGCAGCCATGGCAGCCAGAAGCCAGACGACCAGCCTCTCTCTTGCCTGGGCAGCCAGAAGCCAGATGACCAGCCTCTCTCTCGCCGGGGCAGCCAGATGCCAGAGGatcagcctctctctctggagCTAGATCCCCTGGAGCTCCCTTCTACAAGCACCGTGCTTCGCCCCTCCTCGGCTGCCGAAGTCCTCCTTGGCTCCATCCTCCAGTACCTGAGCTCTGAGCCACCCTCGGATGAGACCATTATACCCAAGGTGGAGACCACTGAGGACCTGAGCTCCAAGAAAGTCTCAGATGAGGCCATGGAGAGCACTGAGTACTACTCCGATGCAAGAGACGTGAGCCCATCCAGACGCAACAGCCTGTCTGCCCACTCCCACAGAAGCTCATCAAGTGCTGGTAACCCGGATGACCAGCCTCTCTCTCGCCGGGGCAGCCAGAAGCCAGATGACCAACCTCTCTCTCGCCGGGGCAGCCAGAAGCCAGACGGCCAGCCTCTTTTTCTGGAGCTGGACCCCCTAAAGCTTCATTCTACCAGCACTGTGAGTCACCCCTCCTTGGCTGCCGAGGTCCTTCTAGGTTCCATCCTCCAGTACATTAGCTCTGAGCCACCCTCAGACGAGCCTGTTGTACCCGAGGTGGAGACCACCAAGAACCACACAGAAGCCAGAGACGAGAGCCCACCCAGATGCAAGAGCCTGTCTGTTCGCTCCCGCAGAAGCTCATCAAGTGCTGGCAACCCATCAAACGTCCGCCAGGGCAGCCAGATGCGGAATGAAGAGCCTCTCTCTGTGGAGTTCAACATCCTGGAGGTCTCTTCTACCAGTGCTTTGCGCCGCCGATCCTTGGCTGCCGAGGTACTCCTTGGCCCCATCCTCCAGTACCTGAGCTCTGAACCATCCTCAGACGAGACCGTTATACCCGAGGTGGAGACCGCAGAGAAGAATTCACACACAAAGGATGAGAGCCCACCCAGACACCAGAGCATGTCTCCCCGCTCCCGCAGGAGCTCGTCCAGTGCTGTTGTGCCTGAGGTGGAGACTACTGAGTACTACTTTGACGAAGGAAACGGCAGCCCACTCAGACGCAAGAGCCTGTCAATCCGCTCCTGCAGGAGCTCATCCAGTGGAGGCAACGCCCCAGCCCCTGGGCTAACCCCAGACAACCCACACAATGACCGCCAGGGCAGCCAGATGCAGGACAGCCTGGAGAATGAAGAGCCTCTCTCTGTGGAGTTCAACACCCTGGCCTTCCCTTCTACCAGCACCATGCGTCGCCGCTCCTGGGCTGTCGAGGTCCTCCTAGACCCCATCCTGCAGTACCTGAACCCTGGGCATTCAGATAAGGCTGATATAGAAGAGGTCGAAATACCTGTGGTGGAGGCCACAGAGCACTAAGAAGTCACCAGTGTCCTAGAAATGGCCTCCCTTTGCAGGCCCAGGTGTAAGACTTATTAGTTGATTTTAGTTTGTGGGTACACATAGGGGGGGGCCATAGTTCAGCAGACATAATCTGTAATCGGTCCATTGGAATCCAAAATGTGTCAATGTATGTCACTGAAAGATTCAGGCGTTCTTCTTCATGTACAGACGCCAACCCACATTTGTTTTGGTTTCCTAACTGAGCATCATGTGACATTATACACCTTGCACCCCATTTATATATTAGACCTAACTATTCTTCAATGATGTGCTAACCTGATGTTGCATTCTGTTTTCTGTTACACTAAGTAGCTGTGAGAAACATAGCTTGTCATGATTAAAGGTAGAATATGGATTGGCCTAAATATGGATGATGGAAGGATGTTGAATGTGTTGATTGAGGAATGAGCATCAAATAGACAGTAGAAAATGTGTCTTTATTACAATGTCATAACATGTTATATTTCATAACATATATAATACATGACACGTTTAGATTGTCCTACAGTATGCATCAACATAATATTGGTTGTATTCAAGAAATAAATAACATTTGTATTGCTGCAGAGAAATGTATTGAGGTTATGAAGAGTGAAATAAAGTGCCATTTccccatctacagtacagtactcagCTCATACATGTACTTTCCCAgaataacacattcatgtttcATGCATTGTATGAAGGTGAACATTACAACATAACTTTTCCCAAATATTTATTTCACAGAAATTAAATCGTTTTATACACATTAGAGAGAAAATAGTAGACAGAATTCTCTCTCATATTAATATATTCATTTATTTACAATTCTCAAACAAACGTGTGCACAGCACAAATAAGTATCAAGTCTGCTAGACCAAGTCTGCTAGACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150443 lncRNA downstream 127884 29569180 ~ 29570775 (-) True LOC110486216
TU150472 lncRNA downstream 129676 29568651 ~ 29568983 (-) True G130567
TU150470 lncRNA downstream 132341 29566107 ~ 29566318 (-) True G130565
TU150469 lncRNA downstream 132627 29565808 ~ 29566032 (-) True G130564
TU150468 lncRNA downstream 133367 29564961 ~ 29565292 (-) True G130563
TU150573 lncRNA upstream 54430 29762371 ~ 29770692 (-) True G130657
TU150588 lncRNA upstream 81713 29789654 ~ 29789873 (-) True G130671
TU150590 lncRNA upstream 84023 29791964 ~ 29792173 (-) True G130673
TU150591 lncRNA upstream 84860 29792801 ~ 29793179 (-) True G130674
TU150592 lncRNA upstream 86411 29794352 ~ 29794580 (-) True G130675
XM_021557712.2 mRNA downstream 59018 29603249 ~ 29639641 (-) False LOC110486252
XM_036944807.1 mRNA downstream 59018 29610149 ~ 29639641 (-) True LOC110486252
XM_021557720.2 mRNA downstream 59019 29603249 ~ 29639640 (-) False LOC110486252
XM_021557692.2 mRNA downstream 99334 29579852 ~ 29599325 (-) True LOC110486243
XM_021557674.2 mRNA downstream 123307 29571712 ~ 29575352 (-) False si:dkey-7j14.6
XR_005036152.1 mRNA upstream 169 29708110 ~ 29709648 (-) True LOC118938819
XM_021557839.2 mRNA upstream 23977 29731918 ~ 29741258 (-) True LOC110486325
XM_021557827.2 mRNA upstream 35133 29743074 ~ 29752177 (-) False LOC101268921
XM_021557800.2 mRNA upstream 35133 29743074 ~ 29752178 (-) False LOC101268921
XM_021557809.2 mRNA upstream 35133 29743074 ~ 29752178 (-) False LOC101268921
TU149442 other downstream 1220828 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 1387927 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 1548673 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 1932127 27766157 ~ 27766532 (-) True G129250
TU147564 other downstream 2420535 27271260 ~ 27278124 (-) True LOC110485245
TU150630 other upstream 161105 29869046 ~ 29878568 (-) True LOC110486376
TU151687 other upstream 1181752 30889693 ~ 30895983 (-) True c2h8orf37
TU151689 other upstream 1189085 30897026 ~ 30899564 (-) True trnae-cuc
TU152152 other upstream 1484478 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 1484525 31192466 ~ 31195186 (-) False LOC110486852

Expression Profile