RNA id: XM_036944831.1


Basic Information

Item Value
RNA id XM_036944831.1
length 2928
RNA type mRNA
GC content 0.51
exon number 3
gene id plin6
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29698659 ~ 29707941 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctgtcttttttgtgtctgcaccagacagaactttTGTTTGTTccgctttgttgtttttttgttctagtgttcagtttctttattaaatcTACCATGAACACGTACCCTGCTGCACCTAGggcctctccttccaacagccgttacagccagactacgATCGGCCTGAGCAGGTTGCTGGAGGTGGTAGGCTCTGTGCTCCAGAGACTACAGCTGCTCTACGTGTACCAGGTGTTGCGTCTAGACGTCGTGAGGAGGCTGGCCCTGGACCAGCTGAAGGCCCAGGTACGGGTCCTGGCTGAACTGGGGCCCGTCAAGCAGCTGTTGGGACTGCCTGCTCAGGTGCAGCTTGTGGTGGCTGACCTGCAGGAGCTGGGCAAGATCCTACTGCAGCTGCTGGTCAACAGCACCCCTCTCTACAACATGctcCAGCAGCCAAGTGATCAGGATGTGGAGGACTTCCTCAACCACCAGGAATCCATGTCCTCTGACACCACTCGCCGCAGTTCTGCCAATAGCCTCTTTCTCAAGGCCATGGACGGCCGCCCACACAAACGCACAAGCTCGTATGCCCGCTCTCAAAGGGGCTCAACCAGTGCCCCCAGTCCAGCCCCAGCCAAATCGCCCAACAGCAGCCATGGCAGCCAGAAGCCAGACGACCAGCCTCTCTCTTGCCTGGGCAGCCAGAAGCCAGATGACCAGCCTCTCTCTCGCCGGGGCAGCCAGATGCCAGAGGatcagcctctctctctggagCTAGATCCCCTGGAGCTCCCTTCTACAAGCACCGTGCTTCGCCCCTCCTCGGCTGCCGAAGTCCTCCTTGGCTCCATCCTCCAGTACCTGAGCTCTGAGCCACCCTCGGATGAGACCATTATACCCAAGGTGGAGACCACTGAGGACCTGAGCTCCAAGAAAGTCTCAGATGAGGCCATGGAGAGCACTGAGTACTACTCCGATGCAAGAGACGTGAGCCCATCCAGACGCAACAGCCTGTCTGCCCACTCCCACAGAAGCTCATCAAGTGCTGGTAACCCGGATGACCAGCCTCTCTCTCGCCGGGGCAGCCAGAAGCCAGATGACCAACCTCTCTCTCGCCGGGGCAGCCAGAAGCCAGACGGCCAGCCTCTTTTTCTGGAGCTGGACCCCCTAAAGCTTCATTCTACCAGCACTGTGAGTCACCCCTCCTTGGCTGCCGAGGTCCTTCTAGGTTCCATCCTCCAGTACATTAGCTCTGAGCCACCCTCAGACGAGCCTGTTGTACCCGAGGTGGAGACCACCAAGAACCACACAGAAGCCAGAGACGAGAGCCCACCCAGATGCAAGAGCCTGTCTGTTCGCTCCCGCAGAAGCTCATCAAGTGCTGGCAACCCATCAAACGTCCGCCAGGGCAGCCAGATGCGGAATGAAGAGCCTCTCTCTGTGGAGTTCAACATCCTGGAGGTCTCTTCTACCAGTGCTTTGCGCCGCCGATCCTTGGCTGCCGAGGTACTCCTTGGCCCCATCCTCCAGTACCTGAGCTCTGAACCATCCTCAGACGAGACCGTTATACCCGAGGTGGAGACCGCAGAGAAGAATTCACACACAAAGGATGAGAGCCCACCCAGACACCAGAGCATGTCTCCCCGCTCCCGCAGGAGCTCGTCCAGTGCTGTTGTGCCTGAGGTGGAGACTACTGAGTACTACTTTGACGAAGGAAACGGCAGCCCACTCAGACGCAAGAGCCTGTCAATCCGCTCCTGCAGGAGCTCATCCAGTGGAGGCAACGCCCCAGCCCCTGGGCTAACCCCAGACAACCCACACAATGACCGCCAGGGCAGCCAGATGCAGGACAGCCTGGAGAATGAAGAGCCTCTCTCTGTGGAGTTCAACACCCTGGCCTTCCCTTCTACCAGCACCATGCGTCGCCGCTCCTGGGCTGTCGAGGTCCTCCTAGACCCCATCCTGCAGTACCTGAACCCTGGGCATTCAGATAAGGCTGATATAGAAGAGGTCGAAATACCTGTGGTGGAGGCCACAGAGCACTAAGAAGTCACCAGTGTCCTAGAAATGGCCTCCCTTTGCAGGCCCAGGTGTAAGACTTATTAGTTGATTTTAGTTTGTGGGTACACATAGGGGGGGGCCATAGTTCAGCAGACATAATCTGTAATCGGTCCATTGGAATCCAAAATGTGTCAATGTATGTCACTGAAAGATTCAGGCGTTCTTCTTCATGTACAGACGCCAACCCACATTTGTTTTGGTTTCCTAACTGAGCATCATGTGACATTATACACCTTGCACCCCATTTATATATTAGACCTAACTATTCTTCAATGATGTGCTAACCTGATGTTGCATTCTGTTTTCTGTTACACTAAGTAGCTGTGAGAAACATAGCTTGTCATGATTAAAGGTAGAATATGGATTGGCCTAAATATGGATGATGGAAGGATGTTGAATGTGTTGATTGAGGAATGAGCATCAAATAGACAGTAGAAAATGTGTCTTTATTACAATGTCATAACATGTTATATTTCATAACATATATAATACATGACACGTTTAGATTGTCCTACAGTATGCATCAACATAATATTGGTTGTATTCAAGAAATAAATAACATTTGTATTGCTGCAGAGAAATGTATTGAGGTTATGAAGAGTGAAATAAAGTGCCATTTccccatctacagtacagtactcagCTCATACATGTACTTTCCCAgaataacacattcatgtttcATGCATTGTATGAAGGTGAACATTACAACATAACTTTTCCCAAATATTTATTTCACAGAAATTAAATCGTTTTATACACATTAGAGAGAAAATAGTAGACAGAATTCTCTCTCATATTAATATATTCATTTATTTACAATTCTCAAACAAACGTGTGCACAGCACAAATAAGTATCAAGTCTGCTAGACCAAGTCTGCTAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150443 lncRNA downstream 127886 29569180 ~ 29570775 (-) True LOC110486216
TU150472 lncRNA downstream 129678 29568651 ~ 29568983 (-) True G130567
TU150470 lncRNA downstream 132343 29566107 ~ 29566318 (-) True G130565
TU150469 lncRNA downstream 132629 29565808 ~ 29566032 (-) True G130564
TU150468 lncRNA downstream 133369 29564961 ~ 29565292 (-) True G130563
TU150573 lncRNA upstream 59671 29762371 ~ 29770692 (-) True G130657
TU150588 lncRNA upstream 86954 29789654 ~ 29789873 (-) True G130671
TU150590 lncRNA upstream 89264 29791964 ~ 29792173 (-) True G130673
TU150591 lncRNA upstream 90101 29792801 ~ 29793179 (-) True G130674
TU150592 lncRNA upstream 91652 29794352 ~ 29794580 (-) True G130675
XM_021557712.2 mRNA downstream 59020 29603249 ~ 29639641 (-) False LOC110486252
XM_036944807.1 mRNA downstream 59020 29610149 ~ 29639641 (-) True LOC110486252
XM_021557720.2 mRNA downstream 59021 29603249 ~ 29639640 (-) False LOC110486252
XM_021557692.2 mRNA downstream 99336 29579852 ~ 29599325 (-) True LOC110486243
XM_021557682.2 mRNA downstream 123334 29571721 ~ 29575327 (-) True si:dkey-7j14.6
XR_005036152.1 mRNA upstream 5410 29708110 ~ 29709648 (-) True LOC118938819
XM_021557839.2 mRNA upstream 29218 29731918 ~ 29741258 (-) True LOC110486325
XM_021557827.2 mRNA upstream 40374 29743074 ~ 29752177 (-) False LOC101268921
XM_021557800.2 mRNA upstream 40374 29743074 ~ 29752178 (-) False LOC101268921
XM_021557809.2 mRNA upstream 40374 29743074 ~ 29752178 (-) False LOC101268921
TU149442 other downstream 1220830 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 1387929 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 1548675 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 1932129 27766157 ~ 27766532 (-) True G129250
TU147564 other downstream 2420537 27271260 ~ 27278124 (-) True LOC110485245
TU150630 other upstream 166346 29869046 ~ 29878568 (-) True LOC110486376
TU151687 other upstream 1186993 30889693 ~ 30895983 (-) True c2h8orf37
TU151689 other upstream 1194326 30897026 ~ 30899564 (-) True trnae-cuc
TU152152 other upstream 1489719 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 1489766 31192466 ~ 31195186 (-) False LOC110486852

Expression Profile