RNA id: XM_021557800.2


Basic Information

Item Value
RNA id XM_021557800.2
length 2971
RNA type mRNA
GC content 0.54
exon number 11
gene id LOC101268921
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29743074 ~ 29752178 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGGGTAAGCTCACCGGCGCCACCTTAATAAAAAAAAGCAGCCGCACAGACCTGTCAATCAACAAGCAACCCAGACAGACATCAGCCCCCAGTGGCTGGCTGTGAGCTGTAAGAGAGTAGCGTCATAGTTGGCCGAGAGCCCCACCGTCTGGAATGAAACGGGCGCAGCGATTGGCTCGACTTTTTTTTGCCCTAgacaactcactctctctcccccttttgtTATTGCAAGCAAACTGGAGAAGAGCCGAGGGAGCAGCAGGATGAacgaagggagcgagagagggcgatagactgatagactgataaCAGTCTAGACAGACAGCtccacagagagaggggtaaaagGGGAAATACATTTGGAATACTGCTTCAGATCTCCCTCTACTTATTTGTCCAGTTCTCCTGTTGATTTGGAGATGTCAGTGAACCCCCCCAACAGCAACGATGCCTGCCTGAGCATCGTGCACAGCCTCATGTGCCACCGACAGGGCGGTGAGAACGAAGGCTTTGCCAAGCGTGCCATAGAGAGCCTGGTAAAGAAGCTGAAGGAGAAGAAGGATGAGCTGGACTCGCTCATCACCGCCATCACCACCAACGGAGTTCACCCCAGCAAGTGTGTCACCATCCAGAGGACGCTTGATGGACGCCTGCAGGTAGCTGGGAGGAAAGGGTTCCCCCATGTGATCTACGCTAGGCTCTGGCGCTGGCCAGACCTCCACAAGAATGAACTGAAGCACGTCAAGTTCTGCCAGTTCGCCTTTGACCTCAAGTATGACAATGTGTGTGTCAACCCCTACCACTACGAGCGAGTGGTATCGCCAGGCATTGTTGGTCTCAGCATTCAAAATGCAGGTGAGGAGGAAAACACTATTTTCAGCATCATCAAACATCATCAAAATGGTCCTCCAGGTCGGCTGATCAAAGAGGAGTACATCCATGACTGTTTTGAGATGGACCTCCCCTCCAGGATGCCCCCCCAGCCCGAGCGCTACAACCAGCCCCTTCCCCCTCTGCAGATGCCCCCCGAGCCGCCCCGCGCCCCATCCTCTGTCAACCTCTACCCCAGCATGCCCCTCTCTCCGCCAGTGAGCAGTTCCATGATGGGGCCCATGTCTGGGGGCCACGGCGAGGGCCTGCTTCAGATCGCCTCTCCCCAGAGCCAGGGCATGCCCCAGACgccgccacccaccacccccacACACGGACCACCCCCCCAGCCCCCTACCCCTCACAGCCAGAGTGACTACAGCAGCagctccaaacacacacagacacagagctcTTATCACACGACCTGGACAGGCACCAGCACGGCCTCCTATACCCCTGTAGGAGCCCAGCAGAATGGGTGTGGCCACCAGCAACCACCACTGCACCACCCCAACCACTTCTGGTCTCAGCAACATCACAGCGCACCTGCCTTTCCTCAGCCAGTCTCCAACCATCCAGGTCCAGAGTTCTGGTGCTCCATCTCCTACTTTGAGATGGACATCCAGGTTGGGGAGATGTTCAAGGTCCTGGCTAACTGCCCCGTGGTGACAGTGGACGGATATGTGGACCCCTCGGGGGGCGACCGCTTCTGTCTGGGCCAACTCAGCAATGTGCACCGCACCGACGCTAGCGAGAGAGCCAGGTTGCACATTGGGAAGGGGGTGCAGTTAGAGTGTCGTGGTGAGGGGGATGTGTGGATGCGTTGCCTTAGCGACCATGCAGTGTTCGTACAGAGCTACTACCTGGACCGGGAGGCGGGGCGAGCCCCGGGAGATGCAGTTCACAAGATCTACCCTGGGGCCTACATGAAGGTGTTTGACCTGCGTCAGTGCCACAGGCAGATGCAGCAGCAGGCAGCCACGGCCCAGGCTGCAGCAGCAGCACAGGCTGCAGCAGTGGCAGGCAACATCCCAGGGCCTGGCAGTGTGGGGGGAATCGCCCCGGCAGTCAGTCTGTCGGCGGCAGCCGGGATAGGTGTGGACGACCTGCGGCGGTTGTGTATCCTGCGGCTTAGCTTTGTGAAGGGCTGGGGGCCCGACTACCCCCGGCAGAGCATCAAGCACACCCCCTGCTGGGTGGAGGTCCACCTGCACCGCGCCCTGCAGCTGCTGGATGAGGTGCTGCACACCATGCCTCTGGCTGACCTAGGAGGACACGGACATGTCAactaagcagtgtgtgtgtgtgggtgtgtgtgagagagaggtggcggTGTCTCAGTTGCTTGGTTTGGATGATAACTGCCCTTCATGAACACTACAGTACGTTTTGGATTGGATACCTTTTTCCCCACCACCTGAAACAAAGACTGTAGGCTTTAATAGAAACTTCTATCGAACTTCTATCGAAAAGGTATTTTCATGCTTTTATATATTTTCCTTGAATCGCCTGATTTTCCTGAAGCAGTTTAGACTGCAAAATGTACTTGCTCAACAGACAATATTTTCACAGAGACTGGAACTTGCACTAAAGGCATCAATGTTTTCTAGTAGTGGTAGAGACTGTAAGGGATGGACTGTGTCACAACAATGGAAACTGGCCTCGTACCTCCAATGACCTGGTAACCTGCCTGGATAAAACACTTTGGGAATTTTTCAGAAAGTCAGAATGATAGCACATGTGCCTCAGTGGATTCTCACTTAAGCAGTGTTGGAATGATGCCTTGATTACAGGGCAGCAGACTCAGACAGGTATATTGCATTTGGAGAATGCTGCTGTCCTTTAACTGCCTTCAGTAGGGTCTGTTTGTTCTTCAGGGAGAAATTGAAATAATAGTCACCACAATCTCCATCAACCTTTTCTCTTATCAGTCTTTTTCATCAACCTGTATCATGTGACTCAGTTATATTtatactggacaaaaatataaatgcaacatgtaaagtgttggtctcgtgtttcatgagctgaattaaaagatcccagaaatgttccataagcacaaaaagtttatttttctcaaatgttgtgcacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150443 lncRNA downstream 172299 29569180 ~ 29570775 (-) True LOC110486216
TU150472 lncRNA downstream 174091 29568651 ~ 29568983 (-) True G130567
TU150470 lncRNA downstream 176756 29566107 ~ 29566318 (-) True G130565
TU150469 lncRNA downstream 177042 29565808 ~ 29566032 (-) True G130564
TU150468 lncRNA downstream 177782 29564961 ~ 29565292 (-) True G130563
TU150573 lncRNA upstream 10193 29762371 ~ 29770692 (-) True G130657
TU150588 lncRNA upstream 37476 29789654 ~ 29789873 (-) True G130671
TU150590 lncRNA upstream 39786 29791964 ~ 29792173 (-) True G130673
TU150591 lncRNA upstream 40623 29792801 ~ 29793179 (-) True G130674
TU150592 lncRNA upstream 42174 29794352 ~ 29794580 (-) True G130675
XM_021557839.2 mRNA downstream 1816 29731918 ~ 29741258 (-) True LOC110486325
XR_005036152.1 mRNA downstream 33426 29708110 ~ 29709648 (-) True LOC118938819
XM_021557777.2 mRNA downstream 35133 29698659 ~ 29707941 (-) False plin6
XM_036944831.1 mRNA downstream 40374 29698661 ~ 29702700 (-) True plin6
XM_036944807.1 mRNA downstream 103433 29610149 ~ 29639641 (-) True LOC110486252
XM_021557876.2 mRNA upstream 52807 29804985 ~ 29812179 (-) False polr3glb
XM_021557862.2 mRNA upstream 52807 29804985 ~ 29812180 (-) False polr3glb
XM_021557869.2 mRNA upstream 52807 29804985 ~ 29812180 (-) False polr3glb
XM_021557884.2 mRNA upstream 52807 29804985 ~ 29812180 (-) False polr3glb
XM_021557893.2 mRNA upstream 52807 29804985 ~ 29812180 (-) False polr3glb
TU149442 other downstream 1265243 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 1432342 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 1593088 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 1976542 27766157 ~ 27766532 (-) True G129250
TU147564 other downstream 2464950 27271260 ~ 27278124 (-) True LOC110485245
TU150630 other upstream 116868 29869046 ~ 29878568 (-) True LOC110486376
TU151687 other upstream 1137515 30889693 ~ 30895983 (-) True c2h8orf37
TU151689 other upstream 1144848 30897026 ~ 30899564 (-) True trnae-cuc
TU152152 other upstream 1440241 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 1440288 31192466 ~ 31195186 (-) False LOC110486852

Expression Profile