RNA id: XM_021557850.2


Basic Information

Item Value
RNA id XM_021557850.2
length 1859
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC110486333
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29765682 ~ 29768627 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGAGTATGCGGCTGGCGAGACTGGGTTTGGATGTCTACTCGCCATCCATATAAAACCAATGCGGAGACTTGCTGTTTACAGTCAGCTCAGAATTGTACGGATGATGACAATAAGTAGCTAACATTGTGACAGTATAGTGATTGGAATGCAATCAAACTGTTGGACATTTGTTCATCAGTGGAATTCAATAGGCTTAACTAGCTAATAATAGCGGTCGGCTATTTTCCACTTATATTTTCTAAACCACGGGACACTGAACAAATATTAAAATGGTCATCATTACAAAGAAATTGAAGACCTTTGAGGTCGTTTTCCATGATCCTACTAAGGCTTTCTACTCCAGTGGTGACAAGGTAGCCGGGAATATTGTGGTTGAGGTGTCCGAGGTGACCAAGGTGTCCGCTATGAGAGTGTTTGGAATTGGATGCGCAAAAGTGGAATACGCGAAAGGAAAGCACAGATGCCGtgaagacattgaatatctgaAATACGAAGATACCGTTTATCTGGACCACCAGCCTAGAGATTCCAATGGCTTGGTTACTCTCAGACCAGGGAACAGATATGAGTACATGTTTGGCTTTGAGCTGCCACATCCTGGGCAACTGGTGTCGTCCTACAAGGGGAAGTTTGGCTGTGTCCAGTATTATGTCAGGGCTGTGATGGAGAGGCCTTCCCAGCCTGCCTTGCAGTGCGAGAAACACTTTGAGGTGGAGGAGCCCTTGGACGTCAACACCCCTGACCTCCTGGCTCCAGCTGCAGGTACGAAGGAGAAGAAGCTCACCTGCATGTTCATCCCAGATGGACATGTGTCCATCAGTGCCAAGATCGACCGCAAGGGCTTCTGCGAGGGCGAGGACATCTGCATCAATGCCAAGTTTGAAAACACCTGCTCACGTATCGTGGTGCCCAAGGCAGCCATCATGGTCAAGCACACCTACCAGGCCAATGGCAGGACCAAGGTCCTGGGGCAGAAGCTCTCAGTCGTGAGGGGCAACCATATCATCTCGGGCATGTGTGACATGTGGCAGGGCAAGACCATCCGAGTGCCTAGGCTCAAGCCCTCACTCCTGGGGTGCGACATCATTCACGTGGACTATGCCCTCAGGaTCTATGTCCACATTCCCGGCAGTGACAAGGTGGTCCTAGAGTTGCCCCTGGTCATCGGGAACATCCCCTTCAATGGCTTTGGCAGCCGCACCAACAGCATGAGCAGCCAGGCAGAGTCCCTGAACACCCCCTTCAGTAGCTTTGGGTCGCTGTGCCTCCCGTCACAACCCCCCAGCTACAGCAACATCTCCCGCGACTGCCGTATCGACTCCGCCCTCACACCTCTGCTGGTCAACTACGACGCAGATGAGGATGAAGGACTGTTCATGCGCGCCCCCGAGCTTTGGtaccctcctccccctgcctACACCGAGGTTGACGAGGATCTCAAACAGCAATGGCCATGTTCATCGGGTCTGCTGAACCACGAGTAAGAGTTGCAATTAATCCCCGTTGTAGTCTAAGCACTGGTGGTTAGCCTTAGTGAGATCGGGGAACGGACTGGTGACTGGTTAAAGAGCAGCACAGCTGTGAAGCAGAAAGAGTGGGACCCTAGCCCTGAAGACTCTTTCAAGGAACAGAACTGAGATGTGGACTTGAGAGTCAAGTTGAAGTGAAACTATTCAGGTTGAATGAGTATGGATTGTAGATGTTGGTGTCCACTCCACATTCACTATCACCATTGCAGTCTTCAGAAACTGATcgttctacagttgaagtcggaagtttacatacacttaggttggagtcattaaaactagtttttcaaccactccacaaatgtattattaacaaactatagttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150215 lncRNA upstream 20815 29726551 ~ 29744867 (+) False G130335
TU150216 lncRNA upstream 33173 29726551 ~ 29732509 (+) True G130335
TU150228 lncRNA upstream 93737 29664010 ~ 29671945 (+) True G130345
TU150172 lncRNA upstream 184272 29577661 ~ 29581410 (+) True G130297
TU150155 lncRNA upstream 210777 29554407 ~ 29554905 (+) False G130282
TU150294 lncRNA downstream 16499 29785126 ~ 29785365 (+) True G130410
TU150295 lncRNA downstream 17077 29785704 ~ 29785943 (+) True G130411
TU150308 lncRNA downstream 30908 29799535 ~ 29799827 (+) True G130424
TU150319 lncRNA downstream 36547 29805174 ~ 29806131 (+) True G130427
TU150303 lncRNA downstream 71832 29840459 ~ 29840782 (+) True G130419
XM_021557752.2 mRNA upstream 67996 29685855 ~ 29697686 (+) False LOC110486279
XM_021557744.2 mRNA upstream 67996 29685868 ~ 29697686 (+) False LOC110486279
XM_021557732.2 mRNA upstream 80532 29679207 ~ 29685150 (+) True LOC110486269
LOC118936731 mRNA upstream 103654 29654875 ~ 29662028 (+) True LOC118936731
XR_005039452.1 mRNA upstream 171466 29594164 ~ 29594216 (+) True LOC118944146
XM_021557906.2 mRNA downstream 47153 29815780 ~ 29833805 (+) True LOC110486369
XR_005036167.1 mRNA downstream 132230 29900857 ~ 29914741 (+) False LOC110486403
XR_005036165.1 mRNA downstream 132232 29900859 ~ 29914741 (+) False LOC110486403
XR_002468068.2 mRNA downstream 132233 29900860 ~ 29914741 (+) False LOC110486403
NM_001124351.1 mRNA downstream 157109 29925736 ~ 29930354 (+) True gnrh-r
TU150246 other upstream 71831 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 124586 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 280552 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 287552 29477617 ~ 29478130 (+) True LOC110534631
TU148590 other upstream 784394 28939899 ~ 28981288 (+) True G128853
TU150298 other downstream 20949 29789576 ~ 29789831 (+) True G130414
TU151478 other downstream 931555 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 979428 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 1522843 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 1591809 31360436 ~ 31363213 (+) False eaf1

Expression Profile