RNA id: XM_036944892.1


Basic Information

Item Value
RNA id XM_036944892.1
length 1647
RNA type mRNA
GC content 0.42
exon number 7
gene id polr3glb
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29804985 ~ 29812180 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGGGTAGTCGACCCCAAGTCGCTGGAGTTCCGCAAACAACATAGTGTTTGGTAAACAATAACGTAGCCCGCGGATTTGtaaactagctaacgttaacttcgatgttttaatattttttatatttaaataTTAGTAGCTAGCTATGGCGCAGAAGGTGGGAGGTCGTGAATaagttgatatggttagttagtaAGCACGTTGTCTTGGTGACCGATATTTTGTCGTGATAAATCTGACAGCACTAGCTAACGTCGTTATCTAGCTAACTAGATTGTAACGTTAGGCGCTAGTCGTTTTCTAGCAAGTTCTTACTAGCTACAGCTGTCATGTAGCTACTGTGCAACCAAGTTATCTGAGCAAGCAAGTTAATATCACTGAAATCACTAGAAGATTTACCTGTGAACCCCCCCGCTGTGTGCTCGCTCCATGGCTGGCCTGGGCCGCGGCAGAGGTCGCGGCAAGGGGTACATGAGCTTCAGTATCGAGGCAGTCGGGATTGGGAAAGGGGAGAACCTGCCCCCTTCAATTCTCCAGCCTACACCTCTGTTCCCTCCCATGGAACACAAGCCTGTCCCCTTGGTGATGGGAGAGGAAGCAGAGTACATGTTGGCACTGAAGCAGGAGTTCAGGGGAAACATGAAGACCCTACCATTTTATGTCCGCCAAGCCGTCTCCAAGAAAGACTGGAAAAGGCTACCAAAAGAGCTTAGAATCCGTGTCAAGAAGCCCCTAAAAGAGAACACCTCTCTTAGTGTGGATACACCAGTGGACCCCAAACCCAGCAAAAAGACCCGGGTGGACAAAGAGGAGATCATCCATAAACTAGAGGTGGGAATAACATTGGAGAAAAAAGAGGAGGAAGTGACCTCAGAtgaagaggaaggggagaagaagaagcaggaggaagagcagcaagatggggaggaggagtatGATGAAGAAGAGTTTGAAGAGGAGACAGACTATATCATGTCGTACTTTGACAATGGAGAGGAGTTCGGGGGGGACAGTGATGACAACATGGATGAGGCCATTTACTGATActttgaaaaacaacaacaacagagcatTGTGCATGCCTAGGACCCAAGAGTCCTGGGAAAATATATGTGACACTCCAGAACTGAGAGAGACTCCAAAGCTGAAAGGATGTGCCGTTGTTCTTTGGTCCATCTTGTATACATGGCCTGAAATGATCTTAACTTGACACATGAATCTTCAAAATAACCCAGGATTCAGTCAGTTCCTGACTTAAAAAATATTCTCAAATTGAGAAGCAGGTTGCACAGCTCAAACCTGCAATAGTTTTAAATGGCTCTTAAGTGTGGTGGTGTTATGGAGAGAGAAGTATGTCATTCTTCTTAAGACGACATCTTTTCTCCTGACACCAATTATAGTATCATTTCTTAGAGGGTTTTTATCCAATTTTAGAAATGTTAAAGAACTTTGAAGATATAAAATGTGTCTAATACACCAATTTTAATGTTATGCTGTTTTATGTAGTTTATATGTAGTTCTAAAAAGTTATGTTTTGTAAAACATTTATATTCATGTAATATCCCAATGTTTTCTGTTAGGTTTGTTATGAAAGAGGATTTTACTCAACTTGAAGTTCTGAAAGAATAAATGGCAGCTAATTTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150592 lncRNA downstream 10405 29794352 ~ 29794580 (-) True G130675
TU150591 lncRNA downstream 11806 29792801 ~ 29793179 (-) True G130674
TU150590 lncRNA downstream 12812 29791964 ~ 29792173 (-) True G130673
TU150588 lncRNA downstream 15112 29789654 ~ 29789873 (-) True G130671
TU150573 lncRNA downstream 34293 29762371 ~ 29770692 (-) True G130657
TU150937 lncRNA upstream 179216 29991396 ~ 29991629 (-) True G131002
TU150939 lncRNA upstream 183156 29995336 ~ 29995607 (-) True G131004
TU150931 lncRNA upstream 229365 30041545 ~ 30044626 (-) True G130996
TU150961 lncRNA upstream 237071 30049251 ~ 30070740 (-) True G131026
TU150964 lncRNA upstream 238130 30050310 ~ 30083349 (-) True G131028
XM_021557800.2 mRNA downstream 52807 29743074 ~ 29752178 (-) False LOC101268921
XM_021557809.2 mRNA downstream 52807 29743074 ~ 29752178 (-) False LOC101268921
XM_021557818.2 mRNA downstream 52807 29743074 ~ 29752178 (-) True LOC101268921
XM_021557827.2 mRNA downstream 52808 29743074 ~ 29752177 (-) False LOC101268921
XM_021557839.2 mRNA downstream 63727 29731918 ~ 29741258 (-) True LOC110486325
XM_021557918.2 mRNA upstream 47395 29859575 ~ 29878742 (-) False LOC110486376
XM_021557933.2 mRNA upstream 47395 29859575 ~ 29878742 (-) False LOC110486376
XM_021557941.2 mRNA upstream 47395 29859575 ~ 29878743 (-) False LOC110486376
XM_021557951.2 mRNA upstream 48663 29860843 ~ 29878744 (-) False LOC110486376
XM_036944918.1 mRNA upstream 68045 29880225 ~ 29900765 (-) True iqgap3
TU149442 other downstream 1327154 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 1494253 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 1654999 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 2038453 27766157 ~ 27766532 (-) True G129250
TU147564 other downstream 2526861 27271260 ~ 27278124 (-) True LOC110485245
TU150630 other upstream 56866 29869046 ~ 29878568 (-) True LOC110486376
TU151687 other upstream 1077513 30889693 ~ 30895983 (-) True c2h8orf37
TU151689 other upstream 1084846 30897026 ~ 30899564 (-) True trnae-cuc
TU152152 other upstream 1380239 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 1380286 31192466 ~ 31195186 (-) False LOC110486852

Expression Profile