RNA id: TU150351


Basic Information

Item Value
RNA id TU150351
length 1422
lncRNA type sense_over
GC content 0.48
exon number 5
gene id LOC110486403
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29900857 ~ 29914741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTCTCTGTGAGCAGCTCTCACATTAGCaagagaggtgtgtgtatgtgtgtgtgtgctcacgtgCAGGGGTGTGTGTGGCTGAGATTCCACTGAGGCAATCCCATAGGGACTTACAGAGTGCTTACCACAGCACCACTGAGTGACTCACACACTGGTCTTGTGCGTATGTGCATGTAACGGTTCTAAGACATGTTTTTTTCGGCAGCCTTGGGGATGTGAACGTGACATAGCTACTTATGCTTTTTTTAAggTCTTTGGGCAGTCGTCGTGCTCAGGGCCGCTGCTTCAGTAACTTGGCCTTTGCCCTCAGTCAGCTGAGGGAGCATGAGGAGGCAGCAGAGAACGACCTCCAAGCCCTGCAGGCCTTCAAAGACACTGGCTTGTGAGGGTTTAGGGGAAGCTCGCTTTAAGTTGAGAGAGCCACCCTCTACTACAAACAAGCTCTGGGTTTACTGTCAAAGTGCAAGGACACGTCCAGCTCGGTCCAGGAGCATCTGGTCAACAAGCTGAGTGAGGCCCTGCAACACAGGCTGTCACTGATCACCCCTAGAAAACCCCAGTGAGTGGAGCTGGCTCTGCAGAGGTGTCTACCGGAgagcaggggaaggaggaggaagccCCGGGTCCAGATGGAGAACAGGCACACACAGTGACGATGGGAGAAGCATGTGACTCCCAGTCACCGGTGACAAGATCTCTCACTGAGAAGCCGGGGTATCTGACTGTGCTGCCAGGGGCATACAGGCAATGcatttaacacacacactgtcgtagcagaattagttaggtaacattgataaataagatgttttatctaCTTTCATAAATATGCTTATGTGGGaaaagtcacttggggcccagcgAGGGGAGGGGTCAggattgtcttcatatgtgagggtatctgttaaaccatgtgaagggctccacaatgtctgtacaccagtcactccctacttttcccattggggggaggagtatggcagtgtctggaaccattgtatgtcccctctgatgtCGAAACTTGTCTTTCATagtatatgacctagaggctcactcctcTCAGGGAGCTTGTCCAGGGGTGggttgtatttgagatgggagtatctagaattgacaattgatatatgccattggatgaggtaatgttttggtaatatgaagtaccaagaacgagaagtagaacCTTGTCTAAGAACGCAAACTGaatgataatttatagctaatgctctCTGGCTATGgaatactcctctctcaagtaaaagtcTTCCTTTGTGCAGTtttcctaagacctgtggtttgtcattgtgagttgagaggggtggatctttgctgtgaaagatctcagttgccattatgttgacactctcagaattcatttatagacactgaattgatctgagagtcaaagggctatggtgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150380 lncRNA upstream 7426 29892273 ~ 29900179 (+) True G130479
TU150368 lncRNA upstream 16087 29880312 ~ 29891518 (+) True G130468
TU150349 lncRNA upstream 46628 29855976 ~ 29860977 (+) False G130451
TU150303 lncRNA upstream 66823 29840459 ~ 29840782 (+) True G130419
TU150319 lncRNA upstream 101474 29805174 ~ 29806131 (+) True G130427
TU150697 lncRNA downstream 81984 29993917 ~ 29994140 (+) True G130773
TU150806 lncRNA downstream 243363 30155296 ~ 30156840 (+) True G130879
TU150730 lncRNA downstream 294125 30206058 ~ 30209730 (+) True LOC110534650
TU150834 lncRNA downstream 317482 30229415 ~ 30229738 (+) True G130906
TU150835 lncRNA downstream 318505 30230438 ~ 30230681 (+) True G130907
XM_021557906.2 mRNA upstream 73800 29815780 ~ 29833805 (+) True LOC110486369
XM_021557850.2 mRNA upstream 138978 29765682 ~ 29768627 (+) True LOC110486333
XM_021557752.2 mRNA upstream 209919 29685855 ~ 29697686 (+) False LOC110486279
XM_021557744.2 mRNA upstream 209919 29685868 ~ 29697686 (+) False LOC110486279
XM_021557732.2 mRNA upstream 222455 29679207 ~ 29685150 (+) True LOC110486269
NM_001124351.1 mRNA downstream 13803 29925736 ~ 29930354 (+) True gnrh-r
XM_021558068.2 mRNA downstream 166715 30078648 ~ 30083392 (+) False LOC110486448
XM_021558076.2 mRNA downstream 166715 30078648 ~ 30083392 (+) True LOC110486448
XR_002468074.2 mRNA downstream 185238 30097171 ~ 30103693 (+) False LOC110486462
XR_005036193.1 mRNA downstream 185238 30097171 ~ 30103693 (+) False LOC110486462
TU150298 other upstream 117774 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 213754 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 266509 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 422475 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 429475 29477617 ~ 29478130 (+) True LOC110534631
TU151478 other downstream 788249 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 836122 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 1379537 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 1448503 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 1448503 31360436 ~ 31366322 (+) True eaf1

Expression Profile