RNA id: NM_001124351.1


Basic Information

Item Value
RNA id NM_001124351.1
length 1578
RNA type mRNA
GC content 0.53
exon number 3
gene id gnrh-r
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29925736 ~ 29930354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATAAAAACTTTGATGTGTATATGATAATAATGTATGTAATCACGATAATGACATACATGTTTTACTTTGTCATCTACAGTCATTCATATAAACCTTGTCTTTTCCAACCCAGGATGTCTGGCAACCTGTCCCTCCTGAGGCCTCCCTTAGTGGGTGCCACCGGGTCAATGCAACCCGCCCTCTCAAACATGTCCCAGTTTCCACCTCTGGTTGACTGGGAGGCGCCCACCTTCACCCGAGCTGCCCAATTCCGTGTCGGCGCCACCTTAATCCTCTTCCTATTTGCTGCCTGCAGCAACCTTGCGTTATTGGTCAGTGTGTGCCGGGGGCGTGGCCGGCGCCTGGCTTCTCACTTGCGACCACTCATCATGAGCCTGGCCACCGCCGACCTGATGATGACCTTTGTGGTGATGCCACTGGACGCCATTTGGAACATCACGGTGCAGTGGTATGGCGGAGACGCCATGTGTAAGATGCTGTGCTTCCTCAAGCTGTTTGCCATGCACTCGTCAGCCTTCATCCTGGTGGTGGTCAGTTTGGACAGGCACCACTCCATCCTGCACCCGCTGGACTCACTCAACTCCCACCACCGGAACAAGAGGATGCTGGGTCTGGCCTGGGGCCTCAGCGTGCTTCTGGCCTTACCACAGCTGTTCATCTTCCGGGCCATCAAGGCAGAGGGCGTAGATTTCACCCAGTGTGTGACCCATGGCAGCTTCAAAGAGCGATGGCAGGAGACGGTCTACAACATGTTCTACTTCGTCACTCTCTACGTGTTCCCCCTGCTGGTCATGAGCTTCTGCTACACACACATCCTTATTGAGATCAATCAGCAACTCCACAGGAACAAAGCTGGCGAGTCCTGCCTGAGGCGCAGTGGCACAGACATGATCCCCAAAGCACGAATGAAGACTCTAAAGATGACCATCATCATTGTGATGTCCTTCGTGGTCTGCTGGACGCCCTACTACCTCCTGGGTATCTGGTACTGGTTCCAGCCGGAGATGCTGCAGGTCACGCCTGAATACATCCACCACGCCCTGTTTGTCTTCGGCAACCTGAACACATGTTTTGACCCGGTCATCTATGGCTTCTACACGCCCTCGTTCCGGGCCGACCTGGCCATGTGCTGGTGCTATAGAAGAAGGGACATTAATATGTCGCCCAGGTCTCTGGACCGCCTGTCCGCCCACCAGGGCCCCCACAGTGGAGAGCAGGACTCTGACGCCCCCGGTGTGGAACAGACCAAAGAGACTGGAGGTGACGGTAGATGACTGGCGCTGACAGTAAGTACATCTGTAAGGTTGGAGGGCTGAGGGAGAGCAGACCTGGAAATGAGCGCTACTAGGGAGTATGTAGACCGATCTACTTATTCTGTGAGGTGAAGACAGTGACAGGCTAAACAGCACCGCCAAAATGTCTCCCCTCTGATTGTACGCCCATCTTTGACATTTTGAGGACATTGATGATCTCGATAGCCACACATCACTATACAGAACTGTCAAATTACAAACACATTTACAAATGCATTTGATGGTACAATAAAATGGTTGGTCGTTTCACTCGGAAGACAAACA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0097211 cellular response to gonadotropin-releasing hormone biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004968 gonadotropin-releasing hormone receptor activity molecular_function

KEGG:

id description
K04280 GNRHR; gonadotropin-releasing hormone receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150351 lncRNA upstream 13803 29907605 ~ 29911933 (+) True LOC110486403
TU150380 lncRNA upstream 25557 29892273 ~ 29900179 (+) True G130479
TU150368 lncRNA upstream 34218 29880312 ~ 29891518 (+) True G130468
TU150349 lncRNA upstream 64759 29855976 ~ 29860977 (+) False G130451
TU150303 lncRNA upstream 84954 29840459 ~ 29840782 (+) True G130419
TU150697 lncRNA downstream 63563 29993917 ~ 29994140 (+) True G130773
TU150806 lncRNA downstream 224942 30155296 ~ 30156840 (+) True G130879
TU150730 lncRNA downstream 275704 30206058 ~ 30209730 (+) True LOC110534650
TU150834 lncRNA downstream 299061 30229415 ~ 30229738 (+) True G130906
TU150835 lncRNA downstream 300084 30230438 ~ 30230681 (+) True G130907
XR_005036167.1 mRNA upstream 10995 29900857 ~ 29914741 (+) False LOC110486403
XR_005036165.1 mRNA upstream 10995 29900859 ~ 29914741 (+) False LOC110486403
XR_002468068.2 mRNA upstream 10995 29900860 ~ 29914741 (+) False LOC110486403
XM_021557906.2 mRNA upstream 91931 29815780 ~ 29833805 (+) True LOC110486369
XM_021557850.2 mRNA upstream 157109 29765682 ~ 29768627 (+) True LOC110486333
XM_021558068.2 mRNA downstream 148294 30078648 ~ 30083392 (+) False LOC110486448
XM_021558076.2 mRNA downstream 148294 30078648 ~ 30083392 (+) True LOC110486448
XR_002468074.2 mRNA downstream 166817 30097171 ~ 30103693 (+) False LOC110486462
XR_005036193.1 mRNA downstream 166817 30097171 ~ 30103693 (+) False LOC110486462
XM_036944998.1 mRNA downstream 167356 30097710 ~ 30103693 (+) True LOC110486462
TU150298 other upstream 135905 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 231885 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 284640 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 440606 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 447606 29477617 ~ 29478130 (+) True LOC110534631
TU151478 other downstream 769828 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 817701 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 1361116 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 1430082 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 1430082 31360436 ~ 31366322 (+) True eaf1

Expression Profile