RNA id: XM_021558045.2


Basic Information

Item Value
RNA id XM_021558045.2
length 5660
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC110486432
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30044707 ~ 30062400 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCGACTAGCTAGTTACCACAGCTACAAAGTCGAAATTGTCTGTCGtacaaattcatgaaaacaaaaataactttttggtcttcACTTATGGTTAACTCTGTTActgttaggtttaaaatcacattttaagaagataaattgtagaaataggcggccCGTATCACTTTGTGGCTATAGCAACTAACGTTAGTGACAACCAAGTCAGATCATCCCACTGCGTGAAGTCGTTCGGCAAATATGTCTGCTACGGATGTAGGCGGTTGTGGACCCGGAGCAGGACCCAGTTCGGGTGCTGGGTCCGGGGCATCAAACCCTCGAAAATTTAGCGAGAAAATAGCTCTACATACCCAACGTCAGGCTGAAGAGACTGCTGCTTTTCATGAGGTTATGATGGACATCACCTCTACCAGGATCCAGGCTCAGAAAGTGCGTCTGGCTAGAACCCAGGGCCCATACTATGGGGGCTCTCTACCCAACGTTAATCAGATCGGCAGGAACCCGGGCGACTTTCAGGGTTTATTCCACTCTAACCTGGACTCCAGTCGTTCCACACGGCACCACGGCCTGGTAGAGCGGGTCCAGAGGGACAGACGCTTCATCTCCCCAGGGCGTCCCTACAGGAAACAAGTGGACAGCTCTCCGTACAACTCAGCCTATCTGTCCCCGCCTCCGGACACCAGTTGGAGAAGGAACTGTTCGGGCAACTTCCCAGGAGACAAAAGCCCGTTGTTTCGCCTCCCCACCATGGCACTCAACAGGACCAACTCAGACTCTGCCCTCCACACCAGTGTGATGAACCCCCCTGCAGGAGACCCCTTCAACGCTGGACACACACTCACCCTTCAGGGCAGACTCACTGGtcagagtgaaggagaggggagaagaaTGTTTCCGTACCCAGTTCCCCCCATTGAGGAGAACATTCTGGATCAGGGCAAACTGCTCAAACCCTGGGACACCAAGAAGTTGCCCCTGCTGTCTTCTCGACCCAAGTCCTGTGAAGTTCCCGGTATCAAtATCTTCCCCTCCCCTGACCAGCAGTCCAGCACCCCCCATGCTCCCTCAGCCCTGAACACGGGGGGCTCCCTGCCCGACCTCTCCAGCCTGCACTTCCCGTCACCGCTGCCCACCCCGCTGGACCCAGACGAGCCGGGGTACCCCTCATCCCTGAGTGGGGGCAGCAGCACGGGCAACCTGgcctccaccctgacccagctggGCATCAATGCCAGCAACGCCTTCTGCCACTCGCCAGGTCTCCTGGCATCTCTTCAGGGGACTCTCAGTAACCCCTCCCTGCAGTCCTCGTTAAGCAACCCCAACATCCAATCATCTCTCAGCAGCCACTCCTTCCCCAACTCCCTCAGCTCCACCTCCTTGCACTCGTCGCTTAGCAACCCTTCCCTGCAGTCCTCCCGtagctcctccccctccctccagtcTTCCCTGAGCAACCAATCCCTGCACTCCTCCCTCAGCAACTCCTCCCTGAGTGTGCAGTCCCTCCACACCGCATCCAGTAACCCTAGTTACAATAGCGGGGTGGGAGGGTCCGGCTCGTGCTCCTCTTATTCGCCACTGCTAACTAGCCAGGGGCAGTCGCCTCTCAGCACGTTGCCACGGAGACGAGCTCAGCTCTCCCCTCTGATCCTACCCATGGGAGGGGAGTCTCGCCGACACCACTCCAAACAGTtctcccccaccatctctcctaacTTGTCCTCCATAACACAGGGTGTCCCTCTGGACACCAGCAAACTCCCCATGGACCAGAGGCTCCCTCCCTACCCCTTCAGCCAACCCCAGCAGCAGCTTCATCAGCCAGGTCCTCCAGCATCCCATCAGCCCCAGCAGGCCTCTCAGGTAGGACAACAGCTCTCCCAGCCGCCCGTGGTAATGCAACAACAAAATCAACAACAGCatcaacaccaacaccatcagCTGCATTTGCAACACCAGCTGCACCAGCAGCAATGTGCCCAGTCTCAGCAGGCCCTCCAGCAGCTGCACCTGCAGAACCTGCGCAATGCCCAGAACCAGCAGATGCAGCACCTGCAGCAGCACCATAGGGTGTCGGTCAAAATTGAGAAGCAGGGTGAGCAGGGCCAGAACTCTCAGTGCCTGCAGACGCAAGACCCGCAGTCAacccagcagcagcaacaacaacagcagcagcagcagcaacaacaacaggacCAGCAAGACCAACTGCAGCAGATGGAGCAGCAAAGGCAGCAGGGATGTCTTCCCCAGCTGCAGCACATCAGCCAGTCCCTGGCCACAGACCTGGGCCTCTACAACGACACATTACTGTTAAACTCTCTGTTGGATGATCCCTACCTGGGCCTGCAGATCGCCTCCAGACAGAACCAGCAGTTCAACATGGAGACTCCGGGAGACAGCCTGTCGTTCAACCACGGTGGCTTGGGCTGTGGGAGTGGTAGAAAAGGCCAGGAGGAATCCTACCACCCCAACCATGGCTTCCTGGAGCTCCACGACTCAGGGGATAGGCAGCACCTTAACAACCAGAACTTTGGGGGAGAGGGATGCCACAACGTCCCTAACATCATCCTCACAGGAGACAGTTCGTTGGGCCTTTCCAAGGAGATCGCCAGCGCCCTGTCCCACGTGCCAGGGTTTGAGATGGACTCCTTTGCTCTGGACGACCCCCTCAGGATGGACCCCCTGGCCCTTGAGGGGCTGGGCATGCTGGACGGAGACTTCATGCTGACCGACCCCGCCGTGGAAGACTCCTTCCGCTCCGACCGCCTCAAGTGACCCCCCCCAGGAGTGGATACGGAGGAGTgaggagggaagggggttggAACGACCCCAGACTGAAGTGGAACAGGTGGGGTTGATCCCTGCTTTGTTTCCCTCTCCTTGGCGATTGACCCAACCACAGCATCTGCGAATAAAAGGTCAGGTGGGAGGTTTTTGACAGTCTAGTGCAGGGATCTCTGACTGGTCCCGGAGAGAAACTGGGAAGCAGGCTGTTGTTCTACCagagcactaacacacctgtcaAATAATCAGCTAATCACTGTCTTAAATCTGGATCTTGATTATTTGAATcgggtgtgttagtgctgggcttgAATAGAATTCTACAtgctctccaggaccagagttgGAGGCACCTGGTCTAGTGGGGACCTCTCCACATGCTTTTTgtgaggtggtgtggtggtggggaaggTTGGAGGACAGGACAGACATGTCAGTGGTGGAGCAAGTTCGTTTACGGTTCTTTCCGCTACATCCAGGCAGTTATCGAAAATGCACTTGTGATGCttaagagaaaaaaagaaaatataGGCATTAGCTTGTACGAGTCTTATCTGCATGTAAACAAATGCACTTCGGATAATGCATAAACGCAGGGATCACGCATGAGGTCAGTTACACTTGAAAATGCCGTCTTAAAAACCATACCATATGCATTCTATGAGACAGGACTTTCCCGACTGGTCTTTCGGCTTTGTCTGTCGGTGTTCCATCATTCCAACGCCAGTATGGGGAGGCTGGAATATCGGCCATGTTCGCCATCTTTCTACTGCAAGAACATACAGTAGATCTGGGGTATTTTCTGGATTACATCAACCCAACCAGAGACTGTTCAACCAATAGTTGCCAATTGACATGTCATTAAGTGTTTCCATTTTATTTAAGTTTGGTGAAGGTAATTCAATGGCGGGCTTTTCAAGCTATAATTCGGATATAGTTCAGTCTTTCAACGGACAAGAGAAGAAAGTGTTTTTTTGAGAGGTGACTTTCTCAGTCCAAGTTGGACAAGTTGGCACTTACGGGGCCATTTTAGTGTCTGGATGGCATATTCATCTGTAAGATTATCACTGTGTCTGTGTTCAAGACCCAGCTAAATTGACCTTTCTCATTTAACGTCTGTTAACTTGAATCGTCTTGATGGTTCCGAATTGAAAAAAAATGACTAAATCAATCGTCTAAGGATATTGTCCTCATATTGAACCAAGTAGTCCACAGAATCCATTATCCAACTCTCCTGTCTATAAAAACAACACAGAAAATAACACATTTCATTGCACCTGTCTGGTGTGTGACAAAATATTTTTGTattctttttttaaacatttttatatGTCCCAACATGACAGCTGTTGCCATTCTGCCAGCCTGCTTCTATACCATTGAGCTTCTCAGTAAGTTTAACCTTTTGCTATGTACCACCCCTGTGTGCCTGCTATCTTCCCCTCAGATCTTAGACCTACCCTCTTCTGCACATTTCCTTTAAAGCAACTAGGGACtgtttgtttttaaatgtgtgcTATTGACAAAGTGTCTGCCTTCCATCAAGATAATTGGCATTGTTGATATGAAAAAGGCAGAGGAAAAGCCCTCAATACATTTCAATTACATGAATTGGAGTTGTATGTTTTATCATTGAGTAATTGGGAAACGGCAAGGCCAAAACCAAGTAGACTAATGCATAGCAACATTTTTGCCATAGTATATATTTTAACTGCTACTACTATCCCAATGCCTTGGAGCTTTAGTGTCCGTTTTAGTCAGGTAATCCTAGCCACTGTGATTGACACCTCTAACCCCTCCCACCTGTAGCACCTGTCTTGCCACAGCAAGGGCCATAGCCAGATTATAGTAACATATTTTTATGTAACAAAGTAGTTATTACTATgaagttttattttttaattaaaggTGGTCTGTCTTTGTATATAAATGGATAAATAATTGAGAGTATATTTAAGAAGAGAAGCCTTTTGGTTCCGCAACACCCTGAAACCGGTTGCATGATTTGAAAAGCAACAGGTTCTGAAAAATGTAGTCCATTTGCTATGCAAAGTGTTCTTGTGCATGTCTCGTGTGACTGTCTGGGAGttgccaaatacatttttttatttagtaCATTTGCATCATACTATTGtagtgaaaatacattttttttaaactaattttTTGGGGCTTTTTATCGGTTTTTAAATGGTCATATTTTGCTTTGGTGACAATGTTTGATATTGGTGTCTGACGACTACTGTAAGTTTGACATTTTGTGGCAGCAACAGGAAGTTAGTGCTTGAGATAATATCGTTCAACTTTCATAATGACAAAGGTTATGGAAATCAGCCCTTCTTTCCAGTGTGGACTGAAAGAGGCCATGTAAGCATTGCAATTTGGATATAGAAAGCTGTATGCAACTGTTACATCATAGATTGGTGGTAACATCCATCCTAAAATTAAGTAGTGCTGTTCTGAAGTTGTGTTAACATAGAGTTTAACCCCCTTATTGACAGATATTGAAGTACCTCTAATTACCGGTATGCTTTATTTCAACCATATTGCTTTTACACTGATCATATGAGCCAAATGCAAATCTTTTTTGACAGGAGTGGTGGTTGAAGTGGTTTGAGTATCAAACCTATGGTAAAACCCATTCACTACTGCCCCCTATCCAACAGTAATAGTGTGGGTTTGCAAAGTCTCCTTTTACCACTGTGAGCCAATGTTGTGCCTcgatgtaaactcagcaaaaaaagaaacgtcctcactgtcaactgcgtttatttccagcaaacttaacatgtgtaaatatttgtatgaacataagatccaacaactgagacaaactgaacaagttccacagatatgtgactaacagaaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150931 lncRNA downstream 81 30041545 ~ 30044626 (-) True G130996
TU150939 lncRNA downstream 49100 29995336 ~ 29995607 (-) True G131004
TU150937 lncRNA downstream 53078 29991396 ~ 29991629 (-) True G131002
TU150592 lncRNA downstream 250127 29794352 ~ 29794580 (-) True G130675
TU150591 lncRNA downstream 251528 29792801 ~ 29793179 (-) True G130674
TU150971 lncRNA upstream 12090 30074490 ~ 30075388 (-) True G131035
TU150973 lncRNA upstream 15443 30077843 ~ 30078431 (-) True G131037
TU150972 lncRNA upstream 17234 30079634 ~ 30080205 (-) True G131036
TU151065 lncRNA upstream 139488 30201888 ~ 30202381 (-) True G131119
TU151073 lncRNA upstream 142514 30204914 ~ 30205524 (-) True G131120
XM_021558025.2 mRNA downstream 3213 29995917 ~ 30041494 (-) True LOC110486409
XM_021558010.2 mRNA downstream 3214 29995917 ~ 30041493 (-) False LOC110486409
XM_021558001.2 mRNA downstream 3215 29995917 ~ 30041492 (-) False LOC110486409
XM_021558018.2 mRNA downstream 3216 29995917 ~ 30041491 (-) False LOC110486409
XM_036944937.1 mRNA downstream 58611 29960662 ~ 29986096 (-) True LOC110534642
XM_021617370.2 mRNA upstream 314 30062714 ~ 30068659 (-) False slc39a1
NM_001124481.1 mRNA upstream 937 30063337 ~ 30067013 (-) True slc39a1
XM_021558173.2 mRNA upstream 162186 30224586 ~ 30228415 (-) False tmem79b
XM_021558156.2 mRNA upstream 162186 30224586 ~ 30228599 (-) False tmem79b
XM_036945159.1 mRNA upstream 162186 30224586 ~ 30228599 (-) False tmem79b
TU150630 other downstream 166139 29869046 ~ 29878568 (-) True LOC110486376
TU149442 other downstream 1566876 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 1733975 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 1894721 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 2278175 27766157 ~ 27766532 (-) True G129250
TU151687 other upstream 827293 30889693 ~ 30895983 (-) True c2h8orf37
TU151689 other upstream 834626 30897026 ~ 30899564 (-) True trnae-cuc
TU152152 other upstream 1130019 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 1130066 31192466 ~ 31195186 (-) False LOC110486852
TU152142 other upstream 1130066 31192466 ~ 31196292 (-) False LOC110486852

Expression Profile