RNA id: TCONS_00027624


Basic Information

Item Value
RNA id TCONS_00027624
length 1638
RNA type mRNA
GC content 0.43
exon number 2
gene id XLOC_013815
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 6896184 ~ 6901351 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCCACTCGTCGATTAAAATATCTGGCTGAGGGTTGTCTATTGTCAGTCACACAGACGGGAGCGCGCAGTATCGTTGCTTTCTGACATGATTCATTTGCGCGTCACATCCAATCTCAGTAGCAAATCTTCGCGGTGACGTGCAGCAATGTTTATCACCGatatttcagaaaaataaagcTTTCGTCTTCAGCTATTGTGAAGtttacttTAGATCAAATGGATATAAAAGAAGAAGACTGCGTCTCTCAGTCTGGGACGCATATCACAGAACAATCGAGCCTAAAGATTAAAACGGGAGAGACGGCCTtcacctgcaaacagtgtggaGAGATTTTCACAACAAACCAAAGTCTTGAAAGTCACAAAGTGATTCACACCGGAGAACAACATTATTTTTGTTcagagtgtggaaagagtttcactcaAATGCGGTATCTTAAAAATCACATGAAGATTCACGCTGGAGATCACCCCTTCACTTGTCCGGAGTGTGATAAGTGTTTCACAATGAAACACAGCCTTGAAAGTCACTTAAAAATTCACACTGGGGAAAAGCCATTCACCTGCCCTGACTGCggaaaaaaattcagattaaaGCAAAGCCTGGAGggccacatgaggattcacaccggagagaaaccttacacatgtcaaaattgtgggaagagtttcagagaGAAACAAATCCTCGACACGCACTtgacgattcacactggagaaaagccttacTCCTGccctgagtgtggaaagagtttcagagtAAAAAAGTGCCTTGAAAACCACATCAAAACtcatactggagagaaaccttacacatgccaagagtgtggaaagagttttgcaataaaacaaaacctAGAAaggcacatgagaattcacactggagaaaagccttacTCCTGCCCTGAGTGTGGAAGGAGTTTCAGAGTGAAACAAGATCTTAAAATTCAtgtgagaattcacactggagaaaaacctttctcctgccaacagtgtggaaaaagcttcacCGAGAACAAGAAGCTTGAAagtcacatgagaattcacactggagaaaagcctttCGTCTGCTCTCATTGCGGAAAGAATTTCAGAGGGAAACAAAACCTTGAGAGCCACATGAGACTTCACACCGGAAGCAAGCCTTACacctgccctcagtgtggaaagagttataACCAACAAAAAAGCCTTGACATTCACATTAggactcacaccggagagaaacctttTGCTTgcgatcagtgtggaaagagttttactcATCAAAGTAACCTTAAGGGTCACAttaggattcacaccggagagaaacctttTACTTGCCctcagtgcgggaagagttttaTAGAGAAAACAAAACTGGAGAGGCACAAGAAAATTCACTCTGGAGAAAAGCCTTACGATTGCCAGCACTGTAAAAAGAGTTTTACGTTAAAGCAAAGCCTGGACATTCACATGAAACTTCATACCAGAGAGAAACCGTACtcctgccaacagtgtggaaagagtttcagagtGAAACAGAAGCTCGTATCCCACATGACAGTTCACACTGAAGAGAAGCCTGCACTTGGCGTGGAAGTAGTTTTAGAATGAAACAAGGCCTCAAAAGTTACACAAGAACATTCTGGggaagc

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-49 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000143117

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029867 lncRNA upstream 449875 6440411 ~ 6446309 (+) True XLOC_013812
TCONS_00029866 lncRNA upstream 451691 6440411 ~ 6444493 (+) False XLOC_013812
TCONS_00029865 lncRNA upstream 489976 6383905 ~ 6406208 (+) True XLOC_013811
TCONS_00029694 lncRNA upstream 582680 6313208 ~ 6313504 (+) True XLOC_013810
TCONS_00029864 lncRNA upstream 836413 6049221 ~ 6059771 (+) True XLOC_013808
TCONS_00029868 lncRNA downstream 86458 6987738 ~ 6988985 (+) True XLOC_013821
TCONS_00027641 lncRNA downstream 171581 7072861 ~ 7074600 (+) False XLOC_013826
TCONS_00027642 lncRNA downstream 171622 7072902 ~ 7097857 (+) True XLOC_013826
TCONS_00029869 lncRNA downstream 217668 7118948 ~ 7119446 (+) True XLOC_013827
TCONS_00027650 lncRNA downstream 259964 7161244 ~ 7161972 (+) True XLOC_013830
TCONS_00027623 mRNA upstream 2909 6891821 ~ 6893275 (+) True XLOC_013814
TCONS_00027619 mRNA upstream 1208441 5674907 ~ 5687743 (+) False XLOC_013805
TCONS_00027618 mRNA upstream 1241183 5651325 ~ 5655001 (+) True XLOC_013804
TCONS_00027617 mRNA upstream 1254359 5640504 ~ 5641825 (+) True XLOC_013803
TCONS_00027616 mRNA upstream 1274886 5604241 ~ 5621298 (+) True XLOC_013802
TCONS_00027626 mRNA downstream 3034 6904314 ~ 6908682 (+) True XLOC_013816
TCONS_00027627 mRNA downstream 9104 6910384 ~ 6916246 (+) False XLOC_013817
TCONS_00027628 mRNA downstream 12815 6914095 ~ 6915576 (+) True XLOC_013817
TCONS_00027629 mRNA downstream 16855 6918135 ~ 6923690 (+) True XLOC_013818
TCONS_00027630 mRNA downstream 26949 6928229 ~ 6934199 (+) True XLOC_013819
TCONS_00027622 other upstream 268894 6627173 ~ 6627290 (+) True XLOC_013813
TCONS_00027621 other upstream 800452 6095618 ~ 6095732 (+) True XLOC_013809
TCONS_00027599 other upstream 1814326 5072925 ~ 5081858 (+) False XLOC_013791
TCONS_00027586 other upstream 2084648 4800588 ~ 4811536 (+) True XLOC_013785
TCONS_00027583 other upstream 2119771 4776292 ~ 4776413 (+) True XLOC_013784
TCONS_00027637 other downstream 133926 7035206 ~ 7035320 (+) True XLOC_013824
TCONS_00027648 other downstream 253221 7154501 ~ 7155699 (+) False XLOC_013830
TCONS_00027653 other downstream 273423 7174703 ~ 7179665 (+) True XLOC_013831
TCONS_00027658 other downstream 405187 7306467 ~ 7306563 (+) True XLOC_013837
TCONS_00027663 other downstream 582937 7484217 ~ 7484331 (+) True XLOC_013841

Expression Profile

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