RNA id: XM_021558076.2


Basic Information

Item Value
RNA id XM_021558076.2
length 2449
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110486448
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30078648 ~ 30083392 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCCGCCGTGTCAGTATGGTTATTCGGCCTCCGGGATGATTGACATGAGAATTGCCAGCTGGATTTTTGGGAGAAATGCGTTTTACACTGGTTGATCTTTAAACACTACTCGTCTGCATTTTTCTCCTCACGTTGGGCCTTCTATTGTTGGGGCCTTCTATTGTTGTAATGCTCTTGAAGTAGacctatatatatactatattcgGAAGAATCATCGTTTCTGAAAACAGCAGCAGACAAGACATGGATATAGAGAATGGAGAGCTGTTTTTCCGTCACAAAGAGGACAGTATGACAGAGGAGAGTTGGGGACTGGAAGGGCCATTTTCTTGCTCTGATGTTATCTATGCTGGCTCTGAAAAACCCCTAGATGAATGCACGGGTCTAAACGACAGTGAGCCAGAGGATGTGCTTTATGCCATCAATCCAAATGACGTCTTCCCTACCAGAGACCCAGTGGAGACCTCCTCAGAGAGCGACAGTGGCATCTCTGAGGAACCCTGCTCCAAGAGCCCCCTAACTGCCACGGTGGACCCCTCTCAGGTCCCCACAACTATCTATCAGGTGGTCTATGACATCAGCACCCTGGCCAACATCAAGACGGAGCCAGAGCAGCATAGTGTTGATGTCATTTCCATAGaactggATGATTGGAGTTCTCAGATGTTGATCTCGGAGTCCTGTATCGTCAACGAGTTACCCCTAGTATCCGCTAGTAGATTTGACCATGGTCATCTTTCTACCCACTCTGGTACCACCTCAGGTCCCACCAGTCCAGACAGCCCGCTGCTTTACCCTGACCTCACACTGACTGAGGAGGAGCAGAAACTGCTGAACCAAGAGGGGATCTCTCTGCCCAACAACCTGCCCCTCACcaagGCTGAGGAACGGATTCTGAAAAAAGTGAGACGCAAAATACGCAACAAACAGTCAGCCCAAGACAGCCGTCGCAGGAAGAAGGACTATGTGGATGGGCTTGAGAGCAGGGCAGCAGCTTGCTCAGTGCAAAACAAAGAGCTGCAGAGGACCGTGGAACAGCTGGAGAAACACAACATGTCTCTCCTGGCTCAGCTGCGCAGACTACAGTCGCTGATCAAGCAGACGGTCACTAAAGCAGCACAGACCAGCACCTGCGTCATGATTATCATCTTCTCTCTGGGCCTCATCATCTTCCCAAGTTACAGCCCCTTCCACTGGGGCGCCTCATCCATAGAAGAGGACTATACACCAAAAGGAGTTATCTCCAGAAGCATCCTCACAGATCCTGCTTCATCCTTGCAAGCTGCTGAGGATGTGGACAACCGTATCATTCAGCCCGATTCCCTACCCGTTTCCCGTGACCTCAGCCAATCAGATCCCCCGGATGCTTCCATAATACTAAAGCAACCAATAGAAAGTCCCAAAATCACTGACATTGAGGATGTGGCCCTGGAGGagagccaaccagggaacagctCGACTCTGGATGAAGGGCAGACTGAACCTCTGGCCCTGGTGTCAGCAACAGGAAAAGGGAGCGCAAGCCTTGACCCCACCAAACCAGCCCACACTGATGAGATGTAGACATTGTTGATGAACTAGTTTGACTACATTCCTTTTGCTTTATAGAGCTCTTCAAAGCTCCTTGAATTCATTATGAACAATGGACAAGTCCAATATGCTGCCCCATTACCacattgtttttcaacaagacccCTTTGGGTGCCTTCAATGCCTAACCATTGCCTTACTCTTTTTTGGTGCTGTGGTGCAAACAAAGTCTAATCTGGGATTCGGTGGAATAGTcctcaaaatggattaaacattTTTGACTGTTTTGACTTTTCTATTTAAGCACCACTTCTTAATGTTTGTATGGTAAAGATTTCTGTACATTTCTAACTTTGAACTCCGAGGAGTTAGTTAGTACATCCTGTGGGAAGGATGAAGGTTGTTAGATTGTAGCCTCAAAAACACCACAGATATGAATATATTGTTTTGGCTATGCATTCTTTCAGCAAGTCTTAgtgtacaccacacacactccttGAAAGTGAGCCTACACCGATGGATTATGTTTTGGACTAACTAACTACTCGTGTGCAAACTGTTTGTGAAACTGCCTAGCTAGTTTCTGACTGGCATCTGTGCTTAATGTAGTTTGCAGCTCCCATAACTGAATGCTGAGAGACTCATTTGGGACTGTAAGCAAACTGTCATATCTTTTGCGtgcacttaaaaatgtcctttgGCCCTCATTCAGTTAAGAGGTAAACAGTGTGTACAATCCAAACATGTCCTTATCTTAAGCATGGAATTGTGGTCCAAATGTATACTCTTCACAGAACTTGCTATCCTAATTTTAGTGTTTGCTGGTGTCCTATTTTATGTGCTTTACTTTACTTTTTATATTTATTAAATGGGAACAATACTGGTTTTGCTTTATGGTAATTAAATAGCCGACCTGAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09048 CREB3; cyclic AMP-responsive element-binding protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150697 lncRNA upstream 84508 29993917 ~ 29994140 (+) True G130773
TU150350 lncRNA upstream 145829 29855976 ~ 29932819 (+) True G130451
TU150806 lncRNA downstream 71904 30155296 ~ 30156840 (+) True G130879
TU150730 lncRNA downstream 122666 30206058 ~ 30209730 (+) True LOC110534650
TU150834 lncRNA downstream 146023 30229415 ~ 30229738 (+) True G130906
TU150835 lncRNA downstream 147046 30230438 ~ 30230681 (+) True G130907
TU150849 lncRNA downstream 171091 30254483 ~ 30254722 (+) True G130921
NM_001124351.1 mRNA upstream 148294 29925736 ~ 29930354 (+) True gnrh-r
XR_005036167.1 mRNA upstream 163907 29900857 ~ 29914741 (+) False LOC110486403
XR_005036165.1 mRNA upstream 163907 29900859 ~ 29914741 (+) False LOC110486403
XR_002468068.2 mRNA upstream 163907 29900860 ~ 29914741 (+) False LOC110486403
XM_021557906.2 mRNA upstream 244843 29815780 ~ 29833805 (+) True LOC110486369
XR_002468074.2 mRNA downstream 13779 30097171 ~ 30103693 (+) False LOC110486462
XR_005036193.1 mRNA downstream 13779 30097171 ~ 30103693 (+) False LOC110486462
XM_036944998.1 mRNA downstream 14318 30097710 ~ 30103693 (+) True LOC110486462
XM_036945018.1 mRNA downstream 32143 30115535 ~ 30168611 (+) False LOC110486473
XM_036945026.1 mRNA downstream 32143 30115535 ~ 30168611 (+) True LOC110486473
TU150298 other upstream 288817 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 384797 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 437552 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 593518 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 600518 29477617 ~ 29478130 (+) True LOC110534631
TU151478 other downstream 616790 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 664663 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 1208078 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 1277044 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 1277044 31360436 ~ 31366322 (+) True eaf1

Expression Profile