RNA id: XR_002468074.2


Basic Information

Item Value
RNA id XR_002468074.2
length 3198
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110486462
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30097171 ~ 30103693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacccccacggacctcccagtcgcggccggttacgacagagcctggcgcgaacccagagtctctggtggcacagcgtAGCCACTGCGCCACCAGGGAGGCCCCCCAATACGTCACTTTCAACGTCATTTAATGTTACATCATACGTTTCTTTGTGTTCAACACTTTAAATCAAGTTTATGAATGTGTTGTCACTTCTTCATTTGCCAGAGGCGAGAGGGGTCGAGGTGGCCGTTTTGGGGCTCGCGGGGGAggacctgtaggtaagcaccttCTGAAGATTTTGCCCATTTGTCCCTCGCATCCCATTTGACCTCTACTTGTGTGAAATAGCCTGCCTGAAGCCTGAAGCCTGCCCCTGATGAGACAGCCTTCAGTGAGGCCCTATTGAAGAGGAACCAGGACCTTGGCCCCACCTCTGTTGCACAGtcATCCATCTTGTCACTGGTCATCAAAATCACCAACGTCATTGACAACGTCATCGTTTCAGCTGGGGCTGAACGTACCACCGTGTCAGAtttgatctcaacagagaaataGTTTGGTGAATCCTCAAATGCAGGGATATAGGAATTTCAAACAAGTTAGTTGAGTTGAATATGACATTGTTTTCATACTTTTCTAACTCTAGGAAATTGAGGAAATGAGACGGGTGGGCTCCTACAAGAAAGGCACCATGACAACAGGACACAATGTTGCAGACCTTGCTGTCATTCTGAAGATATTGCCTTCTGTGGAGACAGAGACCGCTCTGGCAACCAAGGTGGTGGAGACCCTACGCACACAGGACCCTTTGGAAGTCGATATGAAGCTCTTGCAGAACTCCCTGGCTGCCGTTCGCCACGCTCGCTTGTTTGAAGAAAATGCCTCCCACTCCACgGTCACTCTGCACCCTCAATGTGGCCTTCAGGCGGAGCCTGGAGATGCTGTAATCAGGGCTTTTCTTGCCTGGTTCAGCTGGGATCGCAGACCCCTGTGAGAATGGACACTACCGTGTATTCACTGTCATGAACCTGGAGCAACCTGCCGGCCTCTCCATTACATTAAAAAATGTTGtcatcttatccagagcgatttagcaggagcaattagggttgagtgccttgctcaggggcacatccacagatttttcacctagtcggctctgggattcaaaccagcaaccttttggttactggctcagCACTCTAAAGCACTATGATACCCGCCAGCCCGTCTCTTATCCTATCTTGTAAGAGTGTAAACTTACACTTTCTGACGCAATCTTGAATTATTgtttgatttctgttttttttgctgGTCTAAACGGTAGTCTGCAAGACTAATACTAAGGTATCAAACAATACATTTTCAGAGTGTTCCTCACATTATACCAAGATGCTGACATAATATTTGCTCTATCCTGGACATGGTGTGCCTCACTGCTCAGACCCTGGTGAGGTTGCTGTCTCATTGCGGCTACATGAAGATTCTGGGTCTGGATGGAGACACTAGCCATCTGGTGGTGGAGACATCCACGTGGGATGGAGTGACAGTGAAGCCTTCTGAAAAGGTGTATGAGAAGATGCCGGAGTTGGAATTGGTGGTGGATGATGTTGATGGTGATGTAGAAATAGAGGGCATGGACGCTAAAGagggcatggactctaaaagAGGGCATGGACGCTAAAGAGGGCATGGACGCTAAAGAGGGCATGGACGCTAAAAGAGGGCATGGACGCTAAAAGAGGGCATGGACGCTAAAAGAGGGCATGGACGCTAAAAGAGGGCATGGACGCTAAAAGAGGGCATGGACGCTAAAAGAGGGCATGGACGCTAAAAGAGGGCATGGACGCTAAAAGAGGGCATGGACGCTAAAGAGGGCATGGACGCTAAAAGAGGGCATGGACGCTAAAGAGTGATTGTGGTAAAGGGCTTTATTCAGTTTGTCATTCGACTGTGTTGCATGATCCCCTTCTGAGAAAGGATGgggatttatattttatttttgtaccGTCTCCTACCCGCGCCCAGTTTAAGGGCTTGCTTTGTTTTCAGACAAACCTGATACTAGGAACACAAGGTGTGGCTTCCTATGTTTCATTTCATATCAAATCTTGTTAACAGAAATTGAACTATTTTCTCTTGGCTTATTGTATGTCAAagattttgatttaaaaaaatgtttcatTGGAAAATCTTATTTCTATGGTCCACTCCCAATTGATGGTGCTCCAGTGTACAGTTTCTCACTGAGCTGGCTGTCAAAAATGGATAGATCATGTCAGTTTGGTGTCTGAAGATACTGAGCAGCCAGTGGAGACCAGCTGTCTCTGTTTATGCTGTCTGGACTATTACATACAGCGGTGTTGTCACTAATAACTGGGCTTTAATCAATGAACCCAATTACGGAGTCCTTTGACAGAAGAACTGCAAAATGTCATAGTCAGTTAGAGGAGCTGTGAAGGGAGGGGGAGGCAGTAAGCTCAGAGCACTCAGCAATTAAACCCAAGGCTGGCTTATTGAGGTTTTCTCTGGCTAGACGGAGATTGAGCCATGGCTGATAGTATATCATCTATTTTGTTTGATATGAGTGCACAAAATACTATGCTATTGGTATGAAATCTTTAAAGTATCTGTTTCAGTGCTTTCGTAAGCCATTAAACTCAAGGATTTATTCTGCCCCACATATCGAACAGAGCGTTTTCAATATTTTAACTTTTTCTTGAACAATTAAGCTGAAAAAACATGCCGTAGTTATTGTTGATACTCCAGCTGACTAACCACATCCTCTTCAAATGGAATGTTGCAACTGTGGTATTGGAGGTTTAAACTTTTGCATCCTTCTGGGGGTTCCAACCATTCCGAGAAAAAAACATAGTTGGATAGACTACTTTTGTCTCAAAATAACAAAAGTGATGCTGGTGTTTTTCTCTCGGACCTTGACTATGCTTAGCTTTTCAATGGGTTGTTTATTTGCAGTATTCGTCCACTCGTACCTGTATGCAgtttgaaaatggcagatttggacacTAATAAGCTTCTAAATTGGAacgctgtacagtaacatgctatacgtGAAATCAGAGCTCTGGCTCTGCGCTTCACAGCTCTATATTGGTTTTGACAGACagccgttctgaacttgagcaccgaGTAGGGcaagaagttgcccccatccctcctgctaattgggcaggtagcctagtggttagagtgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150697 lncRNA upstream 103031 29993917 ~ 29994140 (+) True G130773
TU150350 lncRNA upstream 164352 29855976 ~ 29932819 (+) True G130451
TU150806 lncRNA downstream 51603 30155296 ~ 30156840 (+) True G130879
TU150730 lncRNA downstream 102365 30206058 ~ 30209730 (+) True LOC110534650
TU150834 lncRNA downstream 125722 30229415 ~ 30229738 (+) True G130906
TU150835 lncRNA downstream 126745 30230438 ~ 30230681 (+) True G130907
TU150849 lncRNA downstream 150790 30254483 ~ 30254722 (+) True G130921
XM_021558068.2 mRNA upstream 13779 30078648 ~ 30083392 (+) False LOC110486448
XM_021558076.2 mRNA upstream 13779 30078648 ~ 30083392 (+) True LOC110486448
NM_001124351.1 mRNA upstream 166817 29925736 ~ 29930354 (+) True gnrh-r
XR_005036167.1 mRNA upstream 182430 29900857 ~ 29914741 (+) False LOC110486403
XR_005036165.1 mRNA upstream 182430 29900859 ~ 29914741 (+) False LOC110486403
XM_036945018.1 mRNA downstream 11842 30115535 ~ 30168611 (+) False LOC110486473
XM_036945026.1 mRNA downstream 11842 30115535 ~ 30168611 (+) True LOC110486473
XM_036945039.1 mRNA downstream 76292 30179985 ~ 30205554 (+) False gon4l
XM_036945049.1 mRNA downstream 76292 30179985 ~ 30205554 (+) False gon4l
XM_036945068.1 mRNA downstream 76292 30179985 ~ 30205554 (+) False gon4l
TU150298 other upstream 307340 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 403320 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 456075 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 612041 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 619041 29477617 ~ 29478130 (+) True LOC110534631
TU151478 other downstream 596489 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 644362 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 1187777 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 1256743 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 1256743 31360436 ~ 31366322 (+) True eaf1

Expression Profile