RNA id: LOC110534650


Basic Information

Item Value
RNA id LOC110534650
length 2902
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC110534650
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30205700 ~ 30209797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGCAGAGCAGTGAGAGGTAGTGAAAAGCAGAGGAtatcagctacagtatatagctATTGGGAGCAATTAATTCTGCTGCGATGGGTACCTTGGGTCCATTTAGCCTGTTCTTGCTTTTTGCGTTGTCTCAGCAGAACGTCTTTGTAGCCGCCAGCGACGTGCTCGAGCTCCGGAATTCTGATTTCGATTACACGGTAGCAGAGTGTGGTCACCGCCAGCAACTAGCCCCAGAATATGAAACTGCAGCAACAAAACGAAAAGGGACAGTATCTTTAGCTAAAATAGACTGCACAGTGAACTCTGAGACGTGTGGACGTTTTGGCGTCAATGGGTACCCCACCACACTCAAAATCTTGCGCAATGGAGAGGACTTTGCTGCTTATGATGGACCCAGGAGTGCAGGTGGCTACTTTAAAATCATTGCTGCTCTggtttgtgtctgtgtttttaGTGTATGTATGACTCATCTAATGTTGTCCCATGTTCCCATATATGGCATTGTGAGCTTCGTGAAAAAACAGGCAGGTCCCAGTTCCATTCCTCTGCACAATGAGAGAGACCTGGATGCATTCAACAATTTTGAAGCCAGTGTGGTTGTTTTTTTCTCAGGTGCTGACAGCTCTCAGATGGCTGAGTTTTTGAAGGCGTCTAGTGCAATGAGAGACAGCCACCGCTTTGCCCACACTGCAAACCTGAGCCTGGGCCTCAAACACGGCGTGGAATCAGAAACGGTGGTGCTCTTCCGGCCCCCACGACTCAACAGCAAGTTTGAGGACAGCGTGATGATGGCATGGGGCAAATTCACTTAGTCCCTATAAACCTGATGGCCAgctggtgagggccacagcacgGGGAAAGAAACTGCTCTTACCTgatatccacctctctctttttctctctccatcactttcACTACCCCATCTTTCTCCCTAGGGTGATGAAAGTGACCACTCAGTTCCAGTCTCAGGGGCTGAGTTACGCTGTGGCCAACAGAGCAGAGTTCCAGGATGAGCTGGAGGAGGAGTTTGGCCCAGGGGAGAGCTACCTCTCATCACCATCAGGAACAGGGAGGGCCACAAGTACAGCATGCAGGAGGAGTTCACACGGGACGGGAAATCCCTGGAGAGGTTCTTGGAGGACTACTTTGCTGGTAAACTGAAGAGACCGGTCTGCTATTTTAATCTCATCTGTTGTTGTCCTTCTTCCCAGTTTCCCCGCTATTTTCTTCGTCTCAGCAGGACAGAAGGACCAACCTCGGAAATACAAGGGTGGCCGTGAGGTGAATAATTTCCTCAAATATCTGAAGGAGGAGGCCACACATCCCCTTGTCCTGGGCACTGCCAGAGAAGACTTGTGAGAGCGcaatgaagagagagaagaaaaaacaaGGGATGAGTTGGTGGACTGGCAAAGAAGCAGAAGACATGAACTATAAGGGGGAAAAAGGAGCCATCCATTGCAATACACAGTTTCCCGAACAGAAGATCTCCTTTGGGTTTCTGTGCCTTACCAGCAACACTGAATACTCATAACATAGAGGACttctaaataaaaaaatctgcagtttttTCATGGGGCTTCAAAAGAGTAATGTTCTCAATGTGAGAGGATGGAGCATCTGCAAGTACAGTAATAGGCAACATGTGCAGATTGGTTTTGCAGTTAAACTGGTGACTTGGTGGTTGCTATTAATATTCCCAAGAAAGGCATACTAGTGTAGCGTCCTTGACTCTGAGTAAGGTACCTCAGTCAGACTATAGATAAATGTAGAAAATGAAAAATTATGTGCAACAGTTTTTGCAAAGTTGCTTACGGGTACAAATAAAAAAGTGCCTGCTAAGCAAATAGATAAAAATAGAATAAAATGTCTGATacaggggcctcccgagtggtgcagcggtctaaggcactgaggcgtcactacagacccgggtttgatcccgggctgtatcacaaccggttgttattgggagtctcatagggcggtgcacaattgtcccagcgttgtccgggtaaggggagggtttggccggggggctttacttggctcatcacgctctagcgactccttgtggctggCCGGGTGTTTGCAGGCTGACCTCTGTTGTCAGTTGTGTTTCCTCCGGTGTTTCACAAggttgtttcctctgacacattggtgcagctggcttccgggttaagtgggtggGTTTTAAGAAGCGAggttggtgggtcatgtttcggaggatgactcgacctttgcctcccgagccccttggggagttgcagtgatgagggAGAAAAAAGAGGGTACaaacacaaaaaacaaacaaaaagttaCAAAATATCTGATACAAAAAGATTTAGACAAGAAAATACATTTGAcattacattttggtcatttagcatgtggtttcccaaactcggtccttggGCCCCCCTGCGTGCAGATGTAGTTTTTTCCCCCCTAGCACGACACAGTTTTCTCAAATAGtcgaagcttgatgatgagttggttatttgaatcagctgtgtactgagtttgggaaactgtgtcttagcagacactcttatccaattTTGTGTGAAAATAGGGTGAAGACTACTGAAGCACTATGGACAGGCTTAGATTTCAGTTGGACTTTTATGCCAAGCATCTCATCTGGGTATGTCTTTCTTTTTGACATACATTTGCACACTTTTGTGCATCTTCCATAAATGCTCTTGAGGAGAGGCAACctagttgggccagtaaccgaaaggttgctggattgaatccccgaccTGATATGGTAAAAATCTGacgttctgccccagaacaaggcagttaacccactgtgccccggtaggccgtcattgtaaataagaatttgttcttattaactgacttgtctagttaaataaataaaacgttTGAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150806 lncRNA upstream 48860 30155296 ~ 30156840 (+) True G130879
TU150697 lncRNA upstream 211560 29993917 ~ 29994140 (+) True G130773
TU150351 lncRNA upstream 293767 29907605 ~ 29911933 (+) True LOC110486403
TU150380 lncRNA upstream 305521 29892273 ~ 29900179 (+) True G130479
TU150368 lncRNA upstream 314182 29880312 ~ 29891518 (+) True G130468
TU150834 lncRNA downstream 19618 30229415 ~ 30229738 (+) True G130906
TU150835 lncRNA downstream 20641 30230438 ~ 30230681 (+) True G130907
TU150849 lncRNA downstream 44686 30254483 ~ 30254722 (+) True G130921
TU150718 lncRNA downstream 103450 30313247 ~ 30313950 (+) True G130793
TU150880 lncRNA downstream 116135 30325932 ~ 30326157 (+) True G130950
XM_036945039.1 mRNA upstream 146 30179985 ~ 30205554 (+) False gon4l
XM_036945049.1 mRNA upstream 146 30179985 ~ 30205554 (+) False gon4l
XM_036945068.1 mRNA upstream 146 30179985 ~ 30205554 (+) False gon4l
XM_036945078.1 mRNA upstream 146 30179985 ~ 30205554 (+) False gon4l
XM_036945059.1 mRNA upstream 146 30183007 ~ 30205554 (+) False gon4l
XM_021558124.2 mRNA downstream 686 30210483 ~ 30214827 (+) True LOC110486492
XR_005039484.1 mRNA downstream 4481 30214278 ~ 30214413 (+) True LOC118944173
XM_021558196.2 mRNA downstream 24723 30234520 ~ 30249314 (+) True LOC110486525
XM_021558216.2 mRNA downstream 51676 30261473 ~ 30311269 (+) False LOC110486531
XM_036945210.1 mRNA downstream 52722 30262519 ~ 30311269 (+) False LOC110486531
TU150298 other upstream 415869 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 511849 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 564604 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 720570 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 727570 29477617 ~ 29478130 (+) True LOC110534631
TU151478 other downstream 490385 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 538258 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 1081673 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 1150639 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 1150639 31360436 ~ 31366322 (+) True eaf1

Expression Profile