RNA id: XM_021558124.2


Basic Information

Item Value
RNA id XM_021558124.2
length 1978
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC110486492
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30210483 ~ 30214827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTTGTACGGCTGTTCATCAAAATTCCCTCGTCCTTAATTGGTCATTTATTTCCCAACCCGCCCAGCCACAAACAAATTAGCCTTTCCTGTGCTGCGTTTGAGAACTTGGTAGCCGGTTGATCTACGCACGCTGCCAAAATGATGGGAAGACCAATCGTCGTGTTGAGCCAGAATATGAAAAGAGAGTCTGGACGCAAGGTTCAGAAAGGGAACATCAGTGCAGCAAAGGCAATAGcagatgtcatcagaacatgcCTGGGACCAAGAGCCATGATGAAGATGCTGCTAGACCCCATGGGCGGCATTGTCATGACCAACGATGGCAATGCCATCCTCCGAGAGATTCAAGTGCAGCACCCGGCAGCCAAGTCCATGATTGAGATCAGCCGCACCCAGGATGAGGAGGTGGGAGACGGCACCACGTCAGTCATCATCCTTGCTGGGGAGATGCTGTCTGTAGCAGAGCAGTTCCTGGAGCAGCAGATGCACCCCACAGTCATCATCAGTGCCTACAGACACGCCCTTGACGACATGCTTGAGATGCTCAAAGACATCAGCACCCCGGTGGATGTGAATGACAGGGCGCAGATGCTGAAGATCATCAACTCTGCCATCTGCACCAAGGCCTTGAGCCGTTGGTCTACCATGGCGTGTAATATTGCCCTGGATGCCGTGCGCACTGTGGAGTTGGAGGAGCACGGGCGCAAGGAGATCAACATTAAGCTGTACGCCAAAGTGGAGAAGGTGCCTGGTGGCTTCATTGAGGACTCATGTGTGCTAAAAGGCGTGATGGTCAACAAGGACGTCACTCACCCCCGCATGCGCAGAATGATCAAGAACCCCCGCATCATCCTGCTGGACTGCTCCCTGGAGTACAAGAAGGGCGAGAGCCAGACTGACATTGAGATCACACGTGaggaggatttttctagaatccTTCAGATGGAGGAAGAGTACATCCAGACAATCTGTGAAGACATCATCCGCCTCAAGCCAGACCTCATCTTCACCGAGAAGGGCATCTCAGACCTGGCACAACACTATCTGATGAAGGCCAACATCACAGCCATCCGCCGTGTCAGAAAGACTGACAACAACCGCATTTCAAGGGCATGTGGGGCTCGCATCGCCAGCCGTACAGATGAGCTGCGTGAGGAGGACGTGGGAACCGGCGCCGGCCTGTTTGAGATCAAGAAGATTGGAGATGAGTACTTCACCTTTGTCACAGAGTGCAAAGACCCCAAAGCCTGCACCATCCTGCTGAGAGGAGCCAGCAAAGAGATCCTGGCTgaGGTGGAGCGTAACTTGCAGGATGCAATGCAGGTGTGTCGTAACGTGCTACTGGACCCATCTCTACTCCCTGGAGGTGGGGCGGTGGAAATGGCTGTGTCCAAGAGGCTGATGGAGCGTTCCAAGACCCTGACTGGGGTGGAGCAGTGGCCCTACCGTGCCGTGGCCCAGGCCCTGGAGGTTATCCCCCGTACACTCATCCAAAACTGTGGTGCCTCAACCATCCGTGTGCTCACCTCTCTCAGGGCCAAGCACACCCTGGAGGCCTGTGCATCATGGGGTGTGAACGGAGAGACTGGCACCTTGGCAGACATGATGGAGCTTGGCATCTGTGAGCCGCTGGCTGTCAAGGCCCAGACTTACAAGACTGCTGTGGAGACGGCCATCTTGCTGCTCCGCATTGATGACATTGTGTCTGGAATCAAGAAGAAAGGCGATGACCAGgctggaggaggacagggagcagAATGAAGATAAATGAGGAAAGAAATGGGTTGGTAGACCAGTGGGCCAACAGACCGCTAGTGTACATAGTACAGCCTACTGTTCTCTTTTGGGATGCTATTTTGCAAAAATACTAAATGTTTGGCCTGGATTGTCTGTTCTCAACCAAGTATGTGTGTCGATAATCAAGCATCACAGTAGCCATGTATGTTTGATTTGCTATAAAATTCAAATCGAATGCG

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09495 CCT3, TRIC5; T-complex protein 1 subunit gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150730 lncRNA upstream 753 30206058 ~ 30209730 (+) True LOC110534650
TU150806 lncRNA upstream 53643 30155296 ~ 30156840 (+) True G130879
TU150697 lncRNA upstream 216343 29993917 ~ 29994140 (+) True G130773
TU150351 lncRNA upstream 298550 29907605 ~ 29911933 (+) True LOC110486403
TU150380 lncRNA upstream 310304 29892273 ~ 29900179 (+) True G130479
TU150834 lncRNA downstream 14588 30229415 ~ 30229738 (+) True G130906
TU150835 lncRNA downstream 15611 30230438 ~ 30230681 (+) True G130907
TU150849 lncRNA downstream 39656 30254483 ~ 30254722 (+) True G130921
TU150718 lncRNA downstream 98420 30313247 ~ 30313950 (+) True G130793
TU150880 lncRNA downstream 111105 30325932 ~ 30326157 (+) True G130950
LOC110534650 mRNA upstream 686 30205700 ~ 30209797 (+) False LOC110534650
XM_036945049.1 mRNA upstream 4929 30179985 ~ 30205554 (+) False gon4l
XM_021558196.2 mRNA downstream 19693 30234520 ~ 30249314 (+) True LOC110486525
XM_021558216.2 mRNA downstream 46646 30261473 ~ 30311269 (+) False LOC110486531
XM_036945210.1 mRNA downstream 47692 30262519 ~ 30311269 (+) False LOC110486531
XM_036945218.1 mRNA downstream 47692 30262519 ~ 30311269 (+) False LOC110486531
XM_036945204.1 mRNA downstream 54070 30268897 ~ 30311269 (+) True LOC110486531
TU150298 other upstream 420652 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 516632 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 569387 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 725353 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 732353 29477617 ~ 29478130 (+) True LOC110534631
TU151478 other downstream 485355 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 533228 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 1076643 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 1145609 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 1145609 31360436 ~ 31366322 (+) True eaf1

Expression Profile