RNA id: XM_021558216.2


Basic Information

Item Value
RNA id XM_021558216.2
length 4184
RNA type mRNA
GC content 0.56
exon number 23
gene id LOC110486531
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30261473 ~ 30311269 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCTTTCTTCACTAGACCtctactccactcctctcctatcTACTCAACTACTCTACTGTGACACTACCCTCTCCCCCAGTGTGAGTCTGGAGGGTTTTGACACAGAAGAGATGGAGCAGGTACTCCTTGGGGCCCTGGAGAGGTTCAGCAGAGGGGGGCGGGACCCTCGCCGAGCCCCCATCACCTCCTATGGCCAGGAACTGGGCTCCCTGCTGTCACTCACAGAGGAGGAGGCGGGCTGCCAGACCCAGCTCTTCTCCCCATTTGAGTCGTCTCAGCTGCAGGGCTTCAGTGCCTCCGCTCCCTCCCTGTGTGCCAGTCCCAGTCTGCGCCAGCTACCCAAAGCCAACCTCCACCCTCCAACCCacgcacacactcatacacactctcagacacctcacacacacccctacacacactcacaaaaccaccaccagcatcatcatcatcagccttGCCATCGCTCCTACTCAAACTCCAATTCCATCTCCCAACGCCACTACCAAGAGTCTTCCCTGGGCTCTGTATTTGGGGGTTCCACACAGAGTGTGGATGAGGAGCTTGGTGAGCTGTGGAGGCAGGAAGAGAGGCAGCGgctgggtgaagagagagagagagagaggtggagggaggagagaaggacggAGGGACTGAGGGGTGCTCCCcccggggaggagaggggggagaagacaggAAGTCCTCTGGGACGCACCTTCAGCTTCCTGCGCAAGATGGCCGGCCAGCGCaagAACAAAGAGAAGGAGCggatgaaggagagggagaaggaggcgCGGGAGCGGGAGGCGCGCTACAGCAACGGTCACCTCTTCACTTCCCTCACCGTGTCTGCCACCACCCTCTGTTCCGCCTGCAACAAAAGCATCACCGCTAAAGAGGCCCTCAGCTGCCCCACCTGCAATGTCACCATCCACAACCGCTGTCGAGACACACTGGCCAACTGTGCCAAGATGAAACAAAAGCAACAGAAGCTAGCCCTGGTGAGGAACAGCTCCGCGCTGCCGAACGTAGCTCTGAGGACCAAAACCCCTATGATGAAGGAGCGGCCCAGCTCAGCCATCTACCCGTCCGACAGTCTCCGTCAGTCCCTGCTGGGCTCTCGCCGTGTCCGCTctggcctctccctctccaagAGTGTCTCCACACAAAACCTTGCAGGGAATCTGAATGACGACTCACCGTTGGGGCTGCGGAGGATCCTGTCTCAGTCCACAGACTCCCTGAACTTCAGAAACAGAGCCATGTCAATGGAGTCCCTCAACGACGAGGGGGAGGTGTACTATGCTGCCATGTTGGAGGagctggagagggaggggaaggactTTGAGGCTGACTCGTGGAGCCGGGCCGTAGACCCCTCCTACCTGCAGACGCACCGCAAAGACGTCATCAAGAGACAGGACGTCATCTATGAGCTGATCCAGACAGAGTTCCACCACGTGAGGACCCTGCGGATCATGGAGGGGGTGTTCCGGCAGGGCATGCTGGACGAGGTGCTGCTGGAGCCGGGCGTGGCGCACGCTGTCTTCCCCTGTCTGGAGCAGCTGATGGCGCTACACACACGTTTCCTTTCCCAGCTTATGACACGACGCACACACAGTCTAGCCCCCGGGAGCAGTACCAACTTCACTATCAACCAACTGGGGGATATACTAACTGAACAGTTCTCAGGGCAGTGTGCAGATGAGATGAGGAAAGCCTATGCTGAGTTCTGTAGCCGCCACCCCAAAGCTGTGAAACTATACAAGGAACTGCTGGCCAGAGACAAGAGGTTTCAGCACTTCATacggAGGGTAAGCCGGGGGCCCCTGCTGCGTCGCCATGGCATCCAGGAGTGCATCCTGCTGGTGACTCAACGCATCACCAAATACCCTGTCCTAATCCAGCGCATCCTGGACAACACCAAGGgcAGTGAAGAGGAGGCCCAGTCCTTAGCCCAGTCCCTGTCTCTGATCCGGGACTTGTTGAGCTCTGTGGACCAGCAGGTGGCAGAGCTGGAGCGGACCCAGAGGCTCCAGGAGATCAGGGCCAGATTGGACCCCCGGGCCCAGGCAGAGGTCAGGGGAGGAGGGGTGTTCAGGGGAGGGGAACTGCTCCGCAGGACGCTCCTCCACGAGGGCACACTGCTGTGGAAGACGCAAGGATCCAGACTcaaagACGTGCAGGTCCTGCTGATGACAGACATCCTGGTGTTCATGCAGGAGAAGGACCAGAAGTATTTATTCCCCTGCATAgacaaGCCTGCAGTGTTGTCTCTGAAGAACCTGATCGTGAGGGACATAGCCAATCAGGAGCGAGGGATGTTCCTGATCAGTGACTCCACCCCCCCAGAGATGTACGAGCTGCACGGCGCCTCACGAGACGACAGGAACAACTGGATGAGACTCATACAGCAGACAGTCAGCAGctgtCCGTCCAGAGAGGACTTCCCCCTGATAGAGACAGAGGACAAGGCCTTACTGCGCCGACTCAGAGCTGACATCCAGCAGAAGGACAGGGAGGTGCTGGAGCTCCTCCAGGAGAGAGTGACTCTGTTCTCTGACCTGGCTGAGGTCACCGGTGGGTGTCAGGAGGTCACGCCCCCCACCAACTCTAGGAACATCTTCCGGGCCGACACACCCTACGCACCCCAGGCGGAATACCTACTCACCGACGCCATCTCAGAGGTTGACAGGCTCAGTGAGTTGCTGCTGGGCTCCAACATAGAGCTTCCCAAGTCCAATGGTAGCACCAACGGTACCAATGATGACCAGAACCACAAAGGGGCGCCAGTGAGCAATGGAGATTCGATCTCCGTCAACGGGACTCATGAAATGAAAGGAAGTCCAGCGTCCAAGGACAGAAATGGTAACCAGCTACAGGACAGACCCCTAAATGAGGAGGTGTGTCAGAGGCTTGTGAACCTCAGTGCTCATCTCCACTCTCTACAGgccGCCGTCATTCACCAAGACTCTGTCCTCGAGCTCCGCCTCCATGAGGGCACTGGCCCTGCCTCCTCAGGTTCCTCCACTCCCACCCCCACTCCTCCAAACTCCTTCCCCAGGCTGTGCCGTTCCATGTCACGTGACACAGGTCTGGATGCGGGCATGGTGGCAGCCATGGGGGAGATGGCCATGCTCCAGAAGCAGCATGATCTGCTGCAGGAGGAGGTGGTGAGGCTGCGCCCCCTGGAGGCCAGGCTGAGGGACAGCGAGAGGACCAGGGCTCAGCTGGAGCAGCAGATCAGGGACAATAAGggcaggaggggaaggaggggcaGGAGGGGCAGCAGAGGCAGCAACGAAGACATTGTGGTGGATGTTACAGCCTTAGAGCAGGCTCCCTCTAAAAGGAGAGGAAGTGGTGATGGCGAGCCCAGCCCTGTCGCCCCATTGGCCTGTCAGGAACCAGTGGACCAATTGGACGGCGTACTGGAAGgcagtgaggaggaagaggaggagtcagAGGAAGAGGCGGATGTAGTGAAGGTTTCACCACGCTCTGACAGTCCAAGAGATCTCCAGGATATACCGGAGGAGAGCGAGTGCGGACCAGAAGCACAGGAATCCAAAGCCTGATTCCGAGACTGTTCTGAATTAACATTGACCTCAAACTGGACATGCAAACCAGAAAACAGGACTTGAGAGCTGGACCAACATATTGTCAACCTTCAACCAACCAGACCTGATAGAAATTATCTTCAGTGATTCCATCTATTCGTCTTTCTTTGGCATAGAAAGCCTACCCAGGAATTGTGTATTGTATCATGGTATATGTTAGTTCGGAGATGTTATATGTTTTTCTAATGTTATGTTAAAAGCTTCATCCTCGGGATTGAACCCCTTTTTCCAATCCCACTCTTCGTTTCTTCTTTCCCTTTTCAAAACAAGGATGactaataagagagagagagattagggcTGAAGAGGAGGAGTTGTTCGTAACAACAATGGAATTCTAATGGTGGACTGTTGATCTATAGGTGTCTGCTGATACCAGTAGGAACTGTACTGTAACTGCCTGTCGTTGTTGTACATTTAGTGTCACCTCTCTACAGACCTGGTTTGTCTGTGGTGGTGGAGCTGACTGATTGAAACTGAACTTAGACCAGTAAAGGAGGGCGTGACAGGAAAAGGGGGAGGACCGGACAGAAAAGGaggatatatgtatatatatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150849 lncRNA upstream 6751 30254483 ~ 30254722 (+) True G130921
TU150835 lncRNA upstream 30792 30230438 ~ 30230681 (+) True G130907
TU150834 lncRNA upstream 31735 30229415 ~ 30229738 (+) True G130906
TU150730 lncRNA upstream 51743 30206058 ~ 30209730 (+) True LOC110534650
TU150806 lncRNA upstream 104633 30155296 ~ 30156840 (+) True G130879
TU150718 lncRNA downstream 1978 30313247 ~ 30313950 (+) True G130793
TU150880 lncRNA downstream 14663 30325932 ~ 30326157 (+) True G130950
TU150877 lncRNA downstream 53111 30364380 ~ 30364733 (+) True G130947
TU150724 lncRNA downstream 82920 30394189 ~ 30397680 (+) True G130799
TU150918 lncRNA downstream 117959 30429228 ~ 30429516 (+) True G130988
XM_021558196.2 mRNA upstream 12159 30234520 ~ 30249314 (+) True LOC110486525
XM_021558124.2 mRNA upstream 46646 30210483 ~ 30214827 (+) True LOC110486492
XR_005039484.1 mRNA upstream 47060 30214278 ~ 30214413 (+) True LOC118944173
LOC110534650 mRNA upstream 51676 30205700 ~ 30209797 (+) False LOC110534650
XM_036945078.1 mRNA upstream 55919 30179985 ~ 30205554 (+) False gon4l
XM_021558269.2 mRNA downstream 3316 30314585 ~ 30321121 (+) False LOC110486559
XM_021558261.2 mRNA downstream 3382 30314651 ~ 30321121 (+) True LOC110486559
XM_036945254.1 mRNA downstream 15221 30326490 ~ 30349970 (+) False LOC110486570
XM_036945250.1 mRNA downstream 15222 30326491 ~ 30349970 (+) False LOC110486570
XM_036945278.1 mRNA downstream 15222 30326491 ~ 30349970 (+) False LOC110486570
TU150298 other upstream 471642 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 567622 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 620377 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 776343 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 783343 29477617 ~ 29478130 (+) True LOC110534631
TU151478 other downstream 388913 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 436786 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 980201 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 1049167 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 1049167 31360436 ~ 31366322 (+) True eaf1

Expression Profile