RNA id: XM_021558261.2


Basic Information

Item Value
RNA id XM_021558261.2
length 1763
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC110486559
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30314585 ~ 30321121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaaatgaatgagtgagTGCTTCAAGTCCACCATAGCCATATCCCACCTGTCCCGCTGCAGCCACACCAGGTTGTCTTGGAAATAGACTAAAACATCAAGTAATTTCAGAGACCTCCTGTCAAGCGGATACGAAACGGTACTATCAGTTACTCTGTCACTCCCATCATGGAAGCTCTGCAGAAGTCTATGCAAAAAAACACTCCCAAAGCCAGTTCTCATGCGATGTGGTGGGGTACACTGGGCACTGTGCGACCCTTCCCCAACTTCAACTCAGAGAAGGATGCCCGCGACATTCAAACTGCCCTGGAGAGCAAAGACAGTGATGTGAACACTTTGGTGAGAATCCTGACCAATCGAAACAATGTTCAGAGACAGAGCATCGCAGAGTCCTACCGTAACCTCACACAGAAGGATGTATGTCCTGCCCTGAAGAAAGCTCTGTCAGGGGGGCTGGAGCAACTCATGCTGGGGCTGATGATGACCCCCTCTCAGTTTGACGCCCATCGCCTCAGACAGTCCATGGAGGGTATTGGTACAGACGAAGAGAGTCTATTGGCTGTGTTGTGTACCAAATCACCACAGCAGCTTAAAGATGCCACTATTGCCTACAAACAGGAGTTTGGACGTTACTTGGAGAATGATCTTATCAGTGAGACTAGTAAAGACTTCACTAAGCTGGTACTGGCCATACTCAAGAAGGAGGAGCTGAATTCAAAGGAGATGGTTGATTATCAGCTCATTTACCAGGATGTTAAGgctctGAATGATGCTGTGAATGGTAAGAAAAAGGACCCAGCCCCCTGGATTCAGGTGTTAACCACGAgagactcaaaccatctcaaCAGAGtgCTATCCAGGTTGGAGGATCTGAGAGGGGAGACTGTGGATAAAACAGTACAGAGTCACTTCTCTGGGGACCTGAGGCTTGGCTTCCGCACTCTGGTTGGCTCCATCCCAAGTATTCCTTTGTTTCTGGCCCAGCGTCTACACAGCAACATTAAGAAAGGCAGTTTAGTGCAGGGGATTCTTATCAGCCACAGTGAAGAGGACCTCCTCTGTGTGAGAATCGAGTATCGCAGACTGACCAACACTTCACTCTACTCTACATTGCAGAAAGAATACAAAGGAGAGATGCAGCAGGCTCTCCTAGCCTTGTGTCGATCTGAAGACCTGTAGAGGAAGAATACCTTTTAACCTACACACGTTGTTGTAACCTAAGAACTGGTATTATGTCTCTCCATTAAACAATTTACACGTCTTTGATATTTCAGCATATTTTGCCATAATTCTACCATGTCTATTTCACCCATAGTGCTAACCATTATGATCGGGTAATTGGCCTTATAGCAACCGAATTTCAAACATCTCACACCTTTGTTTCTACTTCTATGAATATcatccagtgtgtgtgagagttggtGGGGAACAGGGTCCAGGCGCTTCAAATTCtaagtgtctctctccctctgttcgtCCTAATCCCAGGTCAATGTTAGCCAGGAAGTATTAATATCCCTCAAGCATCTCATAGCTAGCATCTCAgactcccctcttcccctccccaccaTTACCCACTGATTCAATCGGTGTTAATCAAATGTGATGTTGGCAGCCTTGGATGTTTGTGTGAGTCGAGACAAAGAGTTTGGATCCTATGATGAGACGCATCAAAAACCACATGTAACTGTTCCTTAATAATGCAACTTTGAACTTGTACAAAGTTCAAAACGATAAATAATAAAAGTTAGTTTTAAACATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150718 lncRNA upstream 701 30313247 ~ 30313950 (+) True G130793
TU150849 lncRNA upstream 59929 30254483 ~ 30254722 (+) True G130921
TU150835 lncRNA upstream 83970 30230438 ~ 30230681 (+) True G130907
TU150834 lncRNA upstream 84913 30229415 ~ 30229738 (+) True G130906
TU150730 lncRNA upstream 104921 30206058 ~ 30209730 (+) True LOC110534650
TU150880 lncRNA downstream 4811 30325932 ~ 30326157 (+) True G130950
TU150877 lncRNA downstream 43259 30364380 ~ 30364733 (+) True G130947
TU150724 lncRNA downstream 73068 30394189 ~ 30397680 (+) True G130799
TU150918 lncRNA downstream 108107 30429228 ~ 30429516 (+) True G130988
TU150923 lncRNA downstream 118811 30439932 ~ 30440195 (+) True G130993
XM_021558216.2 mRNA upstream 3382 30261473 ~ 30311269 (+) False LOC110486531
XM_036945210.1 mRNA upstream 3382 30262519 ~ 30311269 (+) False LOC110486531
XM_036945218.1 mRNA upstream 3382 30262519 ~ 30311269 (+) False LOC110486531
XM_036945204.1 mRNA upstream 3382 30268897 ~ 30311269 (+) True LOC110486531
XM_021558196.2 mRNA upstream 65337 30234520 ~ 30249314 (+) True LOC110486525
XM_036945254.1 mRNA downstream 5369 30326490 ~ 30349970 (+) False LOC110486570
XM_036945250.1 mRNA downstream 5370 30326491 ~ 30349970 (+) False LOC110486570
XM_036945278.1 mRNA downstream 5370 30326491 ~ 30349970 (+) False LOC110486570
XM_036945269.1 mRNA downstream 5371 30326492 ~ 30340056 (+) False LOC110486570
XM_036945260.1 mRNA downstream 5372 30326493 ~ 30349970 (+) True LOC110486570
TU150298 other upstream 524820 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 620800 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 673555 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 829521 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 836521 29477617 ~ 29478130 (+) True LOC110534631
TU151478 other downstream 379061 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 426934 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 970349 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 1039315 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 1039315 31360436 ~ 31366322 (+) True eaf1

Expression Profile