RNA id: XM_036945260.1


Basic Information

Item Value
RNA id XM_036945260.1
length 2809
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110486570
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30326490 ~ 30349970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAGGGCGGAGTAGACCGGAAGCGTGCTGTCTGCTGAAATAAGGAAGAGAACGAGGCAACTgagcagtggagggagagagaaccgtCTTCTTTGCACAGCTTTTCTCCAAATTCTTAGGAATTTCAGTATTCATTTTCAATAGACAACTGGAACCACCGTCCATACATTTAGCTTAAAAGGAAAATCCTACTTGTATTCACCTTGTTGAAACTGCCTTTCGAACCTATAGCATTTATTTTagccgctagctagctaacgacgCTGTCTGTCCATCGACACATCGAGGTGAAAACTTTGGTTTACAGTTTTTAGGCTAGTCTAATTGATTAATTCGGTATAGTTATCAATTGAACTACGTGAGTTAAGTTTTTTATGCACATTACATTTGTCTGCCGGTAAGAATTCATTTAGACTATAAGCTGACTTTCTACAGTGTTGAGTAACGTTAGATTTGAAAGAAACAAAGCAACAAAGCTCTGTTCTAATTTCCAGTTTGGACTCGTTGGCGGGGCGTTGGTTTGTCTGTTCGTGAAAACATCGCACCGGGAACGACGTTTGCCAGCTTGCAACCAATCCAACTGGAACGACTAACGTTAGCATCCTGCACGAGCTAGTTAATAGAAACGCGTTTTCAATCGTTGCAAGTTAGCTAGCAAACAAAATCAACGTCAGAAAATGGCCAATAGCATCGAGGCAGTGAAGCGAAAAATTAAAGTTTTGCAGCAACAGGCGGATGAAGCCGAGGAAAGAGCTGAGACTTTGCAAAGACAGGTTGAAGAGGAGAAGCGGTCAAGGGAACAGGCCGAGGCTGAGGTGGCCTCTCTGAACAGGCGTATCCAGCTGGTTGAGGAGGAGTTGGACAGGGCCCAGGAGAGACTGGCCACTGCTCTGCAGAAActggaggaggcagagaaagcTGCAGATGAGAgcgagagGGGTATGAAGGTGATTGAGAATAGGGCTTCCAAGGATGAGGAGAAGATGGAGGTGCAGGAGATCCAGCTGAAGGAGGCCAAGCACATCGCTGAGGAGGCCGACCGCAAGTATGAGGAGGTGGCTCGTAAGCTGGTGATCATTGAGGGTGATCTGGAGCGTACAGAGGAGAGGGCGGAGCTGGCCGAGGGCAACGCCCGGAGGTTGGAGGAGCAGCTGAGGGGTTTCGACCAGTCACTGAAGAGCCTGCAGGCCTCTGAGGACAAGTACTCCCAGAAAGAGGACAAGTACGAGGAGGAGATCAAGATCCTGACCGACAAACTCAAAGAGGCTGAAACCCGTGCTGAGTTTGCTGAGAGGTCAGTGGCCAAACTGGAAAAGACCATTGATGACCTTGAAGATGCGCTAGCCAACGCCAAGGAGGAGAATGTCAACATTCACGCCACCCTGGACAAGACCCTGGAGGATCTTAACAGCTTCTGAGCGGCTACTGGACCTGCGGCAtggcccctccaccaccacctcttaCTGCTCCACCCCCTCACCTCtggccctgtctctgtctgtgctgGCTGACTGTTTAGTGGGGGGGTTGTTAATTGTTTTTGGTCACGGTAGCACTTTCTTCAGTCCACACCTAGCCAAACGTTTCTCCCCAGTAGACCAAATGTCTGACTGCCTCTCCCACATTCCACCCCAGTATCTGCGGATGCTCTCCTGATGAGCatccctctttttttttttttttgaagccTCTTCATAGCATTCTTTTTAGTCTTAAGGGCAACATTTACTCAAGCACCAACATCTTAAGTGTTTCACAGGTTTCTAATATTCACATTCCAGCTTAGGTGTGTGATTTGTGTTTGAGGCCATTCCTATGGTCTTTTTTTGGATGTTAGCTGTAAGCGTTTAAATACATTGAGGCGCTTCTCTCCTGTTCTGATAAGAACCCTTAAGGGGATATTTGGTGTCCACTGGGACACATATGAAGGTGGCGAGGGTAATAACTCTTACCTAATCATGTCTCCCTTTTGGAATGGGACCACCATTTGATTATTAACTCTCCCTCTGTTATCCCCATCTGAACCACTTGCCCTACCAACGTATCGCCTCAAACTCTTGTCCCCCTCTAACCACTCACCTTCTGCTGGAACATCCTTACACAAGCACTGCTTTTCTACTGCGCCAATGCCCAGAGGGTCCACAACTGTGCTACCTTTTGTCAAGGATTTTGTGTTAATTTACAATTATGGGCTGGGGGGGATTAACATGTTTTTCTTATAAGGGAGAAGTGTTTTGTTGCatgacatgtttttgtttttatctGGAGTCATTTTCCAAAAAGGGCCGTTGTCACAAGTTACTGTAAACTGTTTTTGTTCCACCCCCCACCCTTCCAGTTTACTCCCCCCACCCCAAGATCAGGAAATTGAATTGTGAATGAGTCGTGGGTCATTGAAGGGATATAAACATCTTATAGCTTCAGACAGAATTGGATGCAGATATTCTAGCCAATTGCAGCCTTAGTCCTCTAGGCTAATTGTTATTTTTTTCCAATAAGATGATGTAGGGGAGGGGTGTGATCAGCCAATCACTACGCATTCCACTGCCAAAATGGAAGCATTGGGAGAAGGGACACAAGGGTATTATCTAGACTTATCAGTATAGACTATTAAACTATTTTTTTTCTGCAAATTAAGTGAACTGCAAACCTTATAAttaataaagaaataaaaagtaAAGTATTGCATCAAGTTTAACTGGAACTTTTCACTCGATACCTGGGTGTAAACATTGTTACCAGTAATGTTTTGATTGTAATCATGACACAAATGGAcacaatttttaaaaataaagaacCATGATTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150880 lncRNA upstream 336 30325932 ~ 30326157 (+) True G130950
TU150718 lncRNA upstream 12543 30313247 ~ 30313950 (+) True G130793
TU150849 lncRNA upstream 71771 30254483 ~ 30254722 (+) True G130921
TU150835 lncRNA upstream 95812 30230438 ~ 30230681 (+) True G130907
TU150834 lncRNA upstream 96755 30229415 ~ 30229738 (+) True G130906
TU150877 lncRNA downstream 14410 30364380 ~ 30364733 (+) True G130947
TU150724 lncRNA downstream 44219 30394189 ~ 30397680 (+) True G130799
TU150918 lncRNA downstream 79258 30429228 ~ 30429516 (+) True G130988
TU150923 lncRNA downstream 89962 30439932 ~ 30440195 (+) True G130993
TU151230 lncRNA downstream 105260 30455230 ~ 30455459 (+) True G131262
XM_021558269.2 mRNA upstream 5372 30314585 ~ 30321121 (+) False LOC110486559
XM_021558261.2 mRNA upstream 5372 30314651 ~ 30321121 (+) True LOC110486559
XM_036945210.1 mRNA upstream 15224 30262519 ~ 30311269 (+) False LOC110486531
XM_021558303.2 mRNA downstream 2798 30352768 ~ 30359695 (+) False decr1
XM_021558313.2 mRNA downstream 2974 30352944 ~ 30359695 (+) True decr1
XM_036945475.1 mRNA downstream 135402 30485372 ~ 30505119 (+) False LOC110534660
XM_021558399.2 mRNA downstream 168473 30518443 ~ 30530345 (+) False LOC110486625
XM_021558415.2 mRNA downstream 168473 30518443 ~ 30530345 (+) False LOC110486625
TU150298 other upstream 536662 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 632642 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 685397 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 841363 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 848363 29477617 ~ 29478130 (+) True LOC110534631
TU151478 other downstream 350212 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 398085 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 941500 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 1010466 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 1010466 31360436 ~ 31366322 (+) True eaf1

Expression Profile