RNA id: XM_021558303.2


Basic Information

Item Value
RNA id XM_021558303.2
length 1938
RNA type mRNA
GC content 0.47
exon number 10
gene id decr1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30352768 ~ 30359695 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctttacCTTACGGAAATCAGGgcaaaagtcaaatcaaatttagaAAACATGGCGTCCACTTTACTGTGTCGGGTGTCGTCAATTTCTAAAACTGATTTAATCTTGCCGTTGAAGAGTCTTGTCTACAGACGGTTGTTCAGCAGTGGGACCAGGGCATTGAGTGAGACTGGACCCTCGCAGGCTAAATTCTTTCCTGCAAATGAGGGATCAATGCTGCTCCCTGGGACTTACAAAGGCAAAGTGGCCTTTATCACAGGAGGAGGAACGGGGTTGGGAAAAGGCATGACCACAACACTGTCAGCACTAGGGGCAGAGTGTGTCATCGCTAGCAGAAAACTGGATGTTTTGAAAAAGACTGCAGAGGAAATTACAGCTCAGACAGGAAATAAGGTCCATGCTGTGCAGTGTGATGTTAGAGACCCCAAGTCAATTGAAGCTGCTGTGGACCAACTGGTAGAGGTTGCTGGTCTCCCTGATGTGGTGATCAACAACGCTGCAGGGAACTTCATCTCCCCGTCAGAGAAGCTGTCTGCCAACGCATGGAGGACCATCACAGACATCGTCCTGAACGGCACGGCCTTCGTCACCCTGGAACTGGGCAAGAGGCTGATACTGGCCGAGAAGGGTGCTGCGTTTCTGGCCATCACCACCATCTACGCAGAGACCGGCTCTGGATTTGTGGTTCCCAGTGCGGCTGCCAAGGCAGGAGTGGAAACTCTGTGCATGTCTCTGGCTGCGGAGTGGGGGAGGTACGGCTTGAGGTTTAATGTCATCCAGCCAGGACCAATCAGAACCAAGGGGGCCTTCAGTCGTCTCGATCCCACGGGCATGTTTGAGAAGGCCATGATCGGCAGGATACCCGTGGGCAGGCTGGGCACGCCCGGAGAGATTGCCAACCTGGCAGCCTACTTGTGCAGTGACTATGCCAGCTGGGTGTCTGGAGCGATAATTAGAATGGACGGTGGAGAGTATGTCTCCATGGCAGGAGAATTCAATGATCTGAGGAGGGTCACTAAGGAGCAGTGGGCTATGATGGAGACCATGATCAGGGGCACCAAGGGATCCTAAGAAGTCAAGATGGGAACACGATACTtccggggcagcaggtagcctagtggttagagcgttggactagtaactgaaaggttgcaagattgaatccccgagctgacaaggtaaaaatctgtcgttctgcccctgaacaaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttagctgacttgcttagttaattaaaggttaaaaaaattatatttacTAACTCTCTACCACTGTTAATGCTCCAGGGAAACACAgatactgtacacacagacaATCTTTCCCTCTGTTTCTGACCTAAAACAGAGATTATACCATGTCAGGGAATATGGCTACAggatcgacacacacacacacagccttctctacaaacacattctcacacactcaCTTAACCTCAAGCCTTATTTCTCATTGCCTAATGGACAAATCGACAGGATGGGGACAGTAGGGCAGCATTTGAAGAGAAAATGGCTTCATCAGGAGGCCAACTATTTAGAGGAGGTTCTCTCTCTCGAACCTCATCTTTTCGTTCTCACTCGGTCTGAGATTCTACTGGCTACAGCACTCCCTGGATGAAACTGGCTTCTTGTTGGTTGAAAAACCTGTCCGTTCCTACGATTGACTTGGTATTTTGCTAGTAACAtttatcatttgtttttacaaTGATGCCTTGAAAAGAATGAATTCTGTTCTTTTTCAAAAACATGTTTCAATGGCCTATCTAAGTTGACGTCCAGTAATGCTATTCATTGCTGTTAAGTGATTGTGTTGTGCTCTGTGTGTACAATAAGTGAGGTTTACATGAATATGTCTGTGTGGAGTATGTTGAATAAAAGACAGTAGACATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150880 lncRNA upstream 26611 30325932 ~ 30326157 (+) True G130950
TU150718 lncRNA upstream 38818 30313247 ~ 30313950 (+) True G130793
TU150849 lncRNA upstream 98046 30254483 ~ 30254722 (+) True G130921
TU150835 lncRNA upstream 122087 30230438 ~ 30230681 (+) True G130907
TU150834 lncRNA upstream 123030 30229415 ~ 30229738 (+) True G130906
TU150877 lncRNA downstream 4685 30364380 ~ 30364733 (+) True G130947
TU150724 lncRNA downstream 34494 30394189 ~ 30397680 (+) True G130799
TU150918 lncRNA downstream 69533 30429228 ~ 30429516 (+) True G130988
TU150923 lncRNA downstream 80237 30439932 ~ 30440195 (+) True G130993
TU151230 lncRNA downstream 95535 30455230 ~ 30455459 (+) True G131262
XM_036945254.1 mRNA upstream 2798 30326490 ~ 30349970 (+) False LOC110486570
XM_036945250.1 mRNA upstream 2798 30326491 ~ 30349970 (+) False LOC110486570
XM_036945278.1 mRNA upstream 2798 30326491 ~ 30349970 (+) False LOC110486570
XM_036945260.1 mRNA upstream 2798 30326493 ~ 30349970 (+) True LOC110486570
XM_036945269.1 mRNA upstream 12712 30326492 ~ 30340056 (+) False LOC110486570
XM_036945475.1 mRNA downstream 125677 30485372 ~ 30505119 (+) False LOC110534660
XM_021558399.2 mRNA downstream 158748 30518443 ~ 30530345 (+) False LOC110486625
XM_021558415.2 mRNA downstream 158748 30518443 ~ 30530345 (+) False LOC110486625
XM_021558425.2 mRNA downstream 158748 30518443 ~ 30530345 (+) False LOC110486625
XM_021558375.2 mRNA downstream 159201 30518896 ~ 30530345 (+) False LOC110486625
TU150298 other upstream 562937 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 658917 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 711672 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 867638 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 874638 29477617 ~ 29478130 (+) True LOC110534631
TU151478 other downstream 340487 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 388360 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 931775 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 1000741 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 1000741 31360436 ~ 31366322 (+) True eaf1

Expression Profile