RNA id: XM_036945475.1


Basic Information

Item Value
RNA id XM_036945475.1
length 5672
RNA type mRNA
GC content 0.45
exon number 18
gene id LOC110534660
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30485372 ~ 30505119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gactggtactgtatattgaagaTATCTCGTCCCCATCCCCTTGCATGGAAGGCAAGCCACCGAGGCCAGGCAGTGATGGTGAGCATCATGACATGAGCATCCTTTCCCCGAATATCAGTGCGCACTAATTTTGCTCAGCTGCAGATAAAATTGCTTCTCGAGACACACCACCACCCAGCCGGATGCGCCCAAAAGAGCTACAAAGGATGTGTACTGGTAACAGCAGCAGGGGAACAGCGGAGAAGGATGGTACAGTAGCTGGCGTGAACAAGACAGTGGCACCCGAGCCGAGCTAAGCGTATTTCGACTGCAGTGTCTGAGCGCCGGGAAATTACACCCCCTAATTTGTATTTTCGACTGGAACAACGACGTTCACTTCTAACGCTATTTGGATACATTGTTGCACCCTTCATCCTTGGTTTAGATCAGTCTGTCCGGTGCATCATGCAGACAGGAGCTCACCTGCTTCTCTGTTTCATCCTGCACTATGTGGAAGGATAGTGAACTACAGAACACATCCTTGGCCAGCTCAGGGCCAACATTCACGCCCAAACCACAGAATGACAGTGTTCACTCCTCCCAACCGAGCCAAATAAGGACTTCCCATCCTACTAAAGCCCCATCTCATCTGTCCAGTACTGTACCCCTGACCACATCCACACAGACAGAGCAAACATTGCCCAGGGACACAGTGGAACTGGTAGCCCCCGTCGGCCCAGAGCCCCAAACCGCGGCGAGAAGGAACCAGACCCCCAAAGCCGTCACCCTCCCAGTAACCCAGGTCGTGTCACTTTCAACCATCATCAACGGCAGCCAGAGTACTGGTGATGGAGTGATCATCAGCCATCACTGGGAGCAGGTTGGAGATCCATCCATAGAGCTTGGAGCTTTCTCGGACACACAGATTCTCAACCTATCCAACCTTGCCCCTGGGGAGTACACGTTCAGGTTGACCATTACAGATTCTGACGGGTTGTCAGACTCCACCATGGCTACAGTGAAAGTCATTCAGTCAGTGGAGAATGACCAAATGCCCTACCCCAGCCATGTCACTCTCACCTCCAGCCCCGGTCTTGCTGCTACCCTGGCCCACAGGCAGGATGACCCTACTGCAGCTACCCCCTCTGCCAGAGCCTCTGTCACTCAGAAGACAGAGAACAAAATCACCCCCATAGCTGAGGTCAAGGTGTCAAACAGAGCCCCTGTGGCTATAGTGGGTCCTAACAGGCAGCTGACCCTCCCAGTGACCAGCGTCACCTTGGACGGAAGCAGCAGCACTGATGACCACGCCGTCACCAGCTACCACTGGGACACCATCAGAGGTCCTCCAGGGTCAAGGACACAGGGTGTGGACAAGCCCATAGCTATAGTAACGAGCCTCAGAGCGGGCCGCTATACATTTAGTCTGACTGTGAGTGACCAGGAAGGGCTGAAAGACAGTGCCTTGCTCACAGTCAGGGTTCAAGAGGCCAGAAGCCTTCCACCTGTAGCACATGCCAGCGGCAGCCACACCCTCACCCTGCCCAACAACTCCCTGGTGCTCAGAGGCTCAATGACGGATGGTGACCCAGCCACGGTGCACTTCCTCTGGGTCCGGGACAGTCAGAGCCCTGCTGCTGGCGACGTGCTGTATGGTTCAGAGCAGCAGGCCTCCCTGTACCTGGCCAACTTGGTGGAGGGGACCTATCTATTCCAGCTGCGTGTCACAGACACCCAGGGACGCAGCAGCACCGCCACAGCCACCATGGAAGTGCGGCcagACCCTGGTGGTcgtgaggaggtggaggtggagatgttGGTAGCGCTGGCCCAGGTGAGTGTGTCAAAGAAGGACACCGTGCTCAGACAGTTGGCCGCACTGCTCCACGTCCTGGACAATGGCATCCACCTAAGGGGCCTATGGGGACACTCAGATATCAGGTATTGCCCAATGCAGAAAATGCATACAAAGCACCCATTCCCTGGTCCTAAACTGGCCATTCTGCTGCGAAGTCAGCTGCTGAGGGAGAAGACTGAATACCTGCTCTTCAGAGTCCTTCGAGTGGATACAGTCATGTGCTTGCTCCGCTGCTCGGCGTGTGACCCAATCACCAAGGAGTGTGTCTGTGACCCCTTTTGGACAGAGAACCTCATTCGCCGGTTCTTTGGCGATGGAGAGAGCAACTGTGAGTGGCAGGTTCTCTACTTCATCCTGTCCTTCATGGTCATTGTCTTCATCGTGACAGTCACCTGGACGTGTGTCTACTGCTGCAAAAGgAGAAGGCGCACTAAGGTCAGGAAGAAAACCAAGTACACTATACTGGACAACATGGACGAACAGGAGAAAATGGAGCTGAGGCCCAAATACAACATCAAACACAGGAGCACGGAGCACAACTCCAGCCTCATGATGTCCGAGTCAGAGCTGGACAGTGACCAGGACACTGTCTTCAGTCGAGACCGACCGGTCCGGAGCAGAAACCGGACCAATGCTCAGGCTGCCCGCAACGGGAACACCTACGGATGAGCAGGAACGCACAGAACTGGGGTGGTTATTGTACAACATGAGTGAAACCCACTCTTGGGATTATGGCCGGGGTGCACAGCTCGAGTGCCATTGTGTCTGCTTGTTTTTGGTCTCGTTTTCTATTCAAATACTGGTTTCGACCAGATGTGTACTTTCTATGACATTCATTGGACAACTCAGCACCAGGGAGATGTGAAAATCCAAGGGCTGTAGGATAGTAGAGTTGGGCATCCCTGGATTCTGGGAAATAACAGTGGCATTAAGTTTACATGCATACAGACTGTAATTTGACACTAAGGATGAAGGTGCTCTTTGTGAGGAGGTTCTGTGGCCCCACATACTTCTACAGATAACCAGATTGGTGAATGCACATACAACTATCCATTATGCATACTAGTCTACCGACTACTACTGACCTTTAACTTTGCCTTGTTATCCAATGTTTTTTTACTGTCATTATTTTGTAGGAAATGGAGACAAGCCCAACCCTGGTTGTGAGCATCTGACGCCTCTCCTGTAAATGTTTTGACAAATTGGATTTGTCAAAATGGCTAGATGGAAAAGTCTAAATTCTTATGTTTAGTACCCAAAGTCCATCTTGTGATGCTACTCGTGAATCATTTAATCAGAATCAAACTCAATTTATCTGTGATCTGAGTGTCTTGGACTTTGACACAATACATCACAGCATTATATTGTATTTGAACTACTGTTTTGAGTTAGCACACTTGTCCTCCAAACTAGTTTTGGTATCTATCTCATTTTAAAGCTTCTTTATGCTAAATAAGCATAATGGGTCTCATAAATGGGCCCGAAGAAACAGAACCAGGCATTTCATGGGACAAGCCATAAAGGTGCCAAAATGCTCTATAAGCCTGTGGCTAACAGAGAGCCTATTATATCCAAGTACTTGGTAATGCATCCATTCTTCCTTCCCTTGGCAAGATCTATTATCTAACTTGAACATGGTGGGTAACATGCATTCAATCATtaattcctttgtgtaatgatggATTTTTCCTCCCTCTCATTCACTGTCAGAGAATGTCTGATTACATGAGTATAGTGCTAAATAATTAGGACACACAGTTTAAGGATTAAGAAGAGGACAGATGGAATTGATAATTAACATTACTATGCAGGACAGGTAGCCATTGATGGAATGGATCAAATACTTGACATTAAAGCAACATAAGCATGTCCAATGGTTGCTTTATATTTTTCTTCCCGTAAGGGACTGGGGAGATATTTCCCCAATATGGACAGAAACActaacagccatgttatattcatGGCTTTTTCCCATTACACCACCCAATTTTTGGTATTTGCTCTGTTTACTTAACTAATTACAGCTACCAATGTTTTTACAGAAAATTAAATGCATCAAATCAATGAACAGTGTTCTGAATTCTGTGTAATTTTCTTTCCTGTCCAAAATTAGTAAGATGTAAGGCAGTTTctaccaaccctggtcctccagaacCCTCGACAGCACAAATTGCTATTCCAACGCTGGACAagcatacctgattcaactaatcatcaagccctcaatgtgTTGAATGAGGgttgtccagggctacaacaagtgtgtactgttggggttactggaggaccagggttgggaaacactgatctaACGTAAACCAATTGATATTGTTTGACAAACAAAGTAACACAGtcatttatttaacattttatgAAGTACTCCATTAATATTTACAATAGTTagaaatatttttttacaatgagTGTCACAACCAGAAAACAGAATTGGTAAAATTATTCAAACGGCACTTGTTTGGCAAGAGACATTACTTCAGTTTCAGAGAACACTACAACATTTACATTGCAGGTTCAGATACAGAACATAGGTGGTACAAACTGTCTGAATATCAAAGGCAGCTCTACTGGATAATATATTGTATGTGGGAAGACTAGTTACCAACGACAATATAACCTGTACTAATATAGTGGCATGGTCTACAATAGTTTTTAGTAGTTAGGATAGTTAACTATTTACAGAggatgttacacagtacatttcaTTCTAACTGCTTAGCCCAACAAGGCTATTCCTCAACGGTTACCAAAATAGGGTCATTCATAATTTCACCACACTATTATCAAGTGACATATCTAATACAGCTGGGATCTGGATACAGCCAAGCCCCCTTTTCTAGAAAATAGCCAAATTATAAATAATCTTCCTATTAAAAACAGATTTAAGTCCCTTGTGCGTATCAATAATCTCAGTATTTGCAATTGATGTGCTTATTAAATCTACCCAACTCTATGCTAGGCTTCAAGTTCAAGTTATATAGTGCTTCTCATTAAGGGTCCAATCCTACATTGAGAACACACGTTTGTTTATTTGTATCTCAACATATGATTCAGCCCTAAAGGTCCAAATCGTTATGGGATCCCACAGGTTGGAGACTATTGGGTTATGTCCAAATACTATTGTGGCTTCCGATCCTCTTTAAGGGGCTACCCTTAAAAAGTTCCAATGCAGACGTTTTTATCTCAACATCAAATCATATCTGGGTAacaagtaccttactgtgattttgaacattttaattgaaaacaaaaggaacaaaaatagcttcttagcaaagagcaatttctcaaacaagaatTTTGCTAAGATTGGCTAGGAGTGGCCTGAGTGAGGAGGGGGAAAATGAGtggttattggcagagaggtttagaactctttcttattggtctattaaccaatttaccatCTGGTGATATCACCAGGCAGGCAATAACTTCAGGCGGTCTTTCCAAACAGCTCTTAAACTAAAAAAGGGCATGATCACCTTTTTCACAAAACTGATTCAACCTTAATGtggaaatgtataaaaaacaggAAATTCATGTTTTAGACTGCACTAGGTCTTTAACTAACATGGATAACTGGTTTGGGTTGTCACCATATTGCTTTCCCTTCACCAGTTCTTATAGGCCAGTGGTCAGAGAGGATAAGGAGAGGAAACCATGTAGAGCATGGAACATGGATTTCTCGGCAGTGATGAAGGCTCTCAATGAGGATGAGGATCAGAATCACAATAATTTGTGAAGGAATCATATTTGATGATTGACatcaattgttgttgttttttatgttAAATATGAGTAAGTAACTGTTACTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151264 lncRNA upstream 6395 30478752 ~ 30478977 (+) True G131290
TU151260 lncRNA upstream 10661 30474503 ~ 30474711 (+) True G131286
TU151244 lncRNA upstream 13759 30471159 ~ 30471613 (+) True G131276
TU151234 lncRNA upstream 26415 30458729 ~ 30458957 (+) True G131266
TU151230 lncRNA upstream 29913 30455230 ~ 30455459 (+) True G131262
TU151280 lncRNA downstream 26690 30531809 ~ 30532025 (+) True G131304
TU151291 lncRNA downstream 43116 30548235 ~ 30548448 (+) True G131315
TU151250 lncRNA downstream 52447 30557566 ~ 30572768 (+) True G131279
TU151387 lncRNA downstream 75853 30580972 ~ 30581270 (+) True G131406
TU151398 lncRNA downstream 84794 30589913 ~ 30590180 (+) True G131416
XM_021558303.2 mRNA upstream 125677 30352768 ~ 30359695 (+) False decr1
XM_021558313.2 mRNA upstream 125677 30352944 ~ 30359695 (+) True decr1
XM_036945254.1 mRNA upstream 135402 30326490 ~ 30349970 (+) False LOC110486570
XM_021558399.2 mRNA downstream 13324 30518443 ~ 30530345 (+) False LOC110486625
XM_021558415.2 mRNA downstream 13324 30518443 ~ 30530345 (+) False LOC110486625
XM_021558425.2 mRNA downstream 13324 30518443 ~ 30530345 (+) False LOC110486625
XM_021558375.2 mRNA downstream 13777 30518896 ~ 30530345 (+) False LOC110486625
XM_021558382.2 mRNA downstream 13777 30518896 ~ 30530345 (+) False LOC110486625
TU150298 other upstream 695541 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 791521 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 844276 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 1000242 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 1007242 29477617 ~ 29478130 (+) True LOC110534631
TU151478 other downstream 195063 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 242936 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 786351 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 855317 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 855317 31360436 ~ 31366322 (+) True eaf1

Expression Profile