RNA id: XM_021558382.2


Basic Information

Item Value
RNA id XM_021558382.2
length 4108
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC110486625
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30518443 ~ 30530346 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATGACACGACTGGCATTTGGGCTATTTCACAATAGTAGTGCTTTTTCAGAATGGGATTTCTTCTATCCCACACTAGACTGACTATTTTAGGTCGACTTGATGGTCAGTAATAATAAGCTGAGTGTATTAATCAAAGGCCAGGTTGCTTTCTTGGGTTAAAACATAGGTTTATTTATGTAACTGGAAATAACATATATGACCTTTTTTAAGAAAATTCTGCATCTTTGATGCACTGTACACTCTTTATGACTTGTATGCTACACTCGTTATGGTTAGCAAAAAGCATGTACCATCAAAATAAATCTCTGACCAGGAGTAAAATGACAATCTCCATCAAAGTTGACAGGCTCGACCCAGACAACCATTCTGCCATTGCTAATGCTATAAATGCCAAGTTTTCATCTGTAACCACATCATTACCTACACTAAACCTGTCAGACCTAACTGCATTTTTGTCAGCTATGCCACTCCCCACTGTTGAACCATGGGAAATGCACAGGAAACGACTCTCCGTTTCAACCAGAAAAGCCCCAGGTCCTGACCTCATCAGTGGCAGACTCATCAGGGAAGTCGTTGTTGCAATATCCACCCACCTGACTGACTTCTTCAATACCTCCCTGTGTGAAGGAGTGTGTCCACATCAATGGAAGGAGACAGTCCTCCTGCTGAAGAGTAATCCACAGAGGATTGACCAGCTACGGCCCATCTCACTCATGCCCCTTCTGTGTGAAGGTTTTGTTGCTGAATGGGCAACACAGGATATTCAAAAGAACATCTCCAAACAACAGTTTGGCTGCCTCAAGGGACGCTCAACCACCCTCTCTGCCTGTACAGAACAGCAGACACTAGAGGCACCTCCAGCACATGGGTCCTGACAGACTACAGCAAGGCCTTTGCTCTTGTGGATCACGCAATTGCAATGAAACACCTTTATCTGTCCGACCACAGATCATGCCATGAATTTGAAACATCCATTCCTGCCGTAGCCAGGTTACAAGATCCCATGAGACTCTATCCCAGGCCCAATAACTCTCCTGTGGCCTCCCCCAGGGCACACGGCTTGGTCCAATTGTTTTCGTGGCTCACGTCAATGgcgcagGACCCCAGGCGAGAAGAGAATGGTTGCATTCGGAAAGATACTCCCAGTAGTTGCCAAGTTTTCACAGGTATGAATTTTCCTCACCACTGCAACACCGACTGGATACTCGCCCGTGGACCCAAATTGACCTATGACCAACAGAAAAATCTCACACTTCCAATGAATGATGTCGGGGAATATGAGAGCTGTCGTATGTTCACACCGGTGGACTTGGACTTGGAAACAATTCAAGAGCAAGGAATCAACAGCACCATATATTGTACAGATGGGTGGGTTTACAACACACCCCAAGGAAACCCCACTCTAGTGACAGAGTTTAACCTGGTGTGTGACAACAAAGGTGTGAGTGAGGCATCACAGTCCATCTACATGACCGGCCTCCTAATAGGGTCCCTGGTGTTTGGACCTATGGcagacagGTTTGGTCGTCGCTTCGCCATCCTCGTTTCCCTGCTCTTCCAATTGCTGTTTGGAGTGGCCGCTGCCTTCTCCCCCAACATCTATGTCTACATTAGCCTTCGGTTCGTGGTCGGCATGACAATATCAGGCATTGCCATGAACACATTTGTGCTAGGGGCTGAGTGGACCAGTACATCTAAGCGGGCCCTCTTCACCATCCTCTCACAATGTTTCTATGCCGTGGGGCTGATGTTGCTGCCGTGGATCGCCTACGGGGTCCGCAACTGGAGGGCCCTGCAGCTGGTGCTTTCCAGCCCCGTCCTCCTACTGGCTGTCTACTTCTGGATTCTCCCAGAGTCGGCCCGTTGGCTACTAactcaaggcaggcagaatgagGCCAGGCAGGAGCTCCAGAGGGCAGCTGCGGTCAACAGGAGAGAGGTCCCCCAGTCATTACTCGACATGCTGGAGGCTGAGAACACGTCTACAACGGGCAGTATGATGGACCTCTTCAAGATACCCAACCTGAGGAAACGTGCCCTCACCATGAGCTACATCTGGTTTGTGACCAGCCTGGTCTACTTCGGTGTGAGTCTTAACGTGGGACATTTTGGCCTGGACATCTACCTGACCCAGTTCATCTTTGGCCTGGCAGAGATTCTTTCTCGCCTGGGCTGCTACACCCTCCTGGAGCGCCTGGGCAGGAGGCCCTGTCAGGCAGGCACTCTCTTCTTTGGTGGAGCAGCTTGTCTCCTAATTCTTGCGATTCCTGAAGACCTTCCAGTATTGGTGACGGTCATTGCAGTGACTGGAAAGTTTGCTATAGCAGCCTCCTTCACTATTGTCTATGTCTATACTGCTGAACTCTATCCCACCATTGTAAGacagaatggtgtgggtctGAACTCCATGTGTGCCCGTGGGGCGGGCATCCTGGTCCCTCTGATGCATCTGCTAGAGGTGTACCACCAGGCCCTGCCCATGCTCATCTGTGGCCTCCTGCCCTTCATCGGCGGGGGGCTGTGCTTTCTACTGCCAGAGACCCTCAACACTGAGCTCCAAGACTACATAGACCCACTCGAGGAGAAGACAATAACATCAGAGAGCGGGACTATTGAAAACGGACTCGATGAGGAGGAGAAACCAACTGAATTGAGGAGCTCACAATTCTGATCACTGTCTGGTCCATACTCTCTGGAGGCCCACAGATGCAGCTTCAGGCCcagcagccctgtctccccatccccatacccctgaaccagccctactCCCAACCCAACCTCCCAAAGGAGGTGGGCAGCATTGTGTTGAATGACATGTCAATTGGCATAATTGCAGGTACTGCAATGCATTGAGGACAGGAAAAATCTCTGACACAGGCAGCCAATATCAGAGCCTTAAAGGAAGAGATGCAGGCTCTTAGAGATGGATGGGAGTCTCTTCTGTCTGAGGCAACACTGATTGCTACGCAAATGGATGTTGCACCTCAATTTAGCAAGGAACACAGCCGccagaggaaaaggaagagattCCATGATGAGACCTCTCAAGAGGAGACAGCTCAGGACAGTGCAACAACGGTGTTTTGGAGCACAGTGTTTTTTTTACTGCTGTGGACACCAACATAAGTGACTTTGACACTAGGTTCCACACCACTGAAAAAATTGTAGAATAATTTTCTGCTGTTCTGAAAGTTGGGCAGATTAGTAAGGATAAAGTCCCTTCTGTGTGCCAACCACTGATCATTAAGTATTCCAGAGATCTTACACCTGAGTTTCAAAATGAAGtaagacacctgaacactgtatatgctgccactttcccccctaacttgtcccctcttggtctcctgaatGCAATTTGTATGATGCAGCTGCAAAGCATTGTTGGAGAAGTGTGCATTGCTTTACGTATATTTTGCACACTGCCTGTGACTGTTGCTGGTGGTGAGAGCTTTCAGTAAGCTAAAACTGATCAACTATTTGAGGTCCACTATGTCCCAGGACAGGCTTTGCAGTCTTGCCATGCTGTCCATTGAAAGTCAGTTAGCTAGAAAGCTGGACTTCAAGACTTGATCAGTGACTTTGCTCCTAAGAAGGCCCGGCGCTGGGCTCTTGGTGAGTAAGGCTGAGCAAGAGCCAGTGATAACTGTTAAATGGCATGGATATTGGATCACTACACACATGATGCCCACAGGCTGAGAACCAGACAGAACAGGATGTATCTCAAAGTAATGGCTGGATTGCCATAAAATATGTCAAGACCCCAAGTGAAAGAAACCTATTGATTTGGTGACCACTTGACCTTTCCTCTAGCGCCACCATCAGGCCTTTTCAGTTCcgttttattttccattttcaGTTTCCACTTTTACAGCAGCTTATTTTCCagttggtatgtatacttagttcaaaaatctgctgctgatttttattattttgtttgttatACCATTCTATAGATGATAATGTTAATTTATTGTAGTTGCATAGGATAATGTATATTTAAGTTATTTATTTGAAGTTATTCATTAATGTTAAGAGAATTTTCCATTCAAGAATTGTACCATTAAAATTTGATTTAGACTGTAAAAGATGGCCTTTAGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151256 lncRNA upstream 15550 30502809 ~ 30503346 (+) True LOC110534660
TU151255 lncRNA upstream 15620 30502746 ~ 30503276 (+) False LOC110534660
TU151271 lncRNA upstream 30931 30487745 ~ 30487965 (+) True G131295
TU151269 lncRNA upstream 31957 30486700 ~ 30486939 (+) True G131293
TU151264 lncRNA upstream 39919 30478752 ~ 30478977 (+) True G131290
TU151280 lncRNA downstream 1464 30531809 ~ 30532025 (+) True G131304
TU151291 lncRNA downstream 17890 30548235 ~ 30548448 (+) True G131315
TU151250 lncRNA downstream 27221 30557566 ~ 30572768 (+) True G131279
TU151387 lncRNA downstream 50627 30580972 ~ 30581270 (+) True G131406
TU151398 lncRNA downstream 59568 30589913 ~ 30590180 (+) True G131416
XM_036945475.1 mRNA upstream 13777 30485372 ~ 30505119 (+) False LOC110534660
XM_021558303.2 mRNA upstream 159201 30352768 ~ 30359695 (+) False decr1
XM_021558313.2 mRNA upstream 159201 30352944 ~ 30359695 (+) True decr1
XM_036945260.1 mRNA upstream 168926 30326493 ~ 30349970 (+) True LOC110486570
XM_036945269.1 mRNA upstream 178840 30326492 ~ 30340056 (+) False LOC110486570
XM_021558454.2 mRNA downstream 2483 30532828 ~ 30542573 (+) True LOC110486681
XM_036945505.1 mRNA downstream 87658 30618003 ~ 30746151 (+) False si:dkey-22o22.2
XR_005036284.1 mRNA downstream 87658 30618003 ~ 30746151 (+) True si:dkey-22o22.2
XM_021558527.2 mRNA downstream 268435 30798780 ~ 30807966 (+) False LOC110486724
XM_036945539.1 mRNA downstream 268435 30798780 ~ 30807966 (+) False LOC110486724
TU150298 other upstream 729065 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 825045 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 877800 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 1033766 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 1040766 29477617 ~ 29478130 (+) True LOC110534631
TU151478 other downstream 169837 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 217710 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 761125 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 830091 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 830091 31360436 ~ 31366322 (+) True eaf1

Expression Profile