RNA id: XM_021558454.2


Basic Information

Item Value
RNA id XM_021558454.2
length 2581
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC110486681
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30532828 ~ 30542573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGCTCGTTGCTactcaacattttgaaaaagcacCGCGAGCTAAAAGGGTTAGAACAATCCGGAATCATTGGTTCCTCCATACCATAACATTAACCCCTACCATTAACCACAACCCttacctaaccataaccttaaaccATTTTTGTATTTCAACTTTAAAGGGATAGGGACGTCCACAATAACAAGGACAGAGCCAAGATGGTCGAGTGCGCGGTGCGCATCTGAGGTCATAGAGCTGTCTGAAACGCACGGAGTTTTGTCATGTTTTCTTCGAGTAACTGGCGCTCTTTTCACTTCTGCTCACAAGAAGATAAGAATCATGACCAACACTAGTGTCAAAACGCATAGCTGGCTGTTTTACGCAGAGTATAAAAAATAACTTGGCTAATGGAGAGAATGGAAATCTCAACCATCCCTTTTATCAAGATGAAAACTCTCGATATATAGCCAGGTGCCCTTCAGGTTTTCCCCTCCACCCCAGGCAGGCCTGTGACCGCCATGATGAGCAGCTCATCCAGCCCAGCTGAGTTCTACAGGGACAGCACCTCCCTCCTGTCCATAGACTCCAGCGTCTTCTACAGCGAACCCCCTCCTGTCTGTGGCAACCCACTGGACTTCTTCACCATCAATGTGGGTGGCAGCCGCTACGTTCTCTCCCAGGAGCTGCTGGCATCCCACCCAGAAACCCGGCTGGGCAAGCTGGCCCTGTCCACACGGGACTCTGCCCTAGAGCTCTGCGACGACACTGACTTCCTGGAGAATGAGTTCTTCTTCGACCGCAACTCACAGACCTTCCAGTATGTGATAAACTTCTACCGCACAGGCCACCTGCATGTCAGGGAGGAGCTTTGCGTGCTCTCCTTCCTCCAGGAGATTGAGTACTGGGGCATCGACGAGCTCTGCATCGATCCCTGCTGCCGGGGACGCTACTACCGCCGCAAGGAGCTCAAGGAGAGCCTGGACATGCGGAACGAGGCTGAGGCTGACGAAAGCCAGGACGAAGACTTCAACGACGCCGCGTGCCCAGATCTCCGCCGGCACCTGTGGGACCTGCTGGAGAAGCCAGAGTCTTCACGAGCGGCTCGCGCCTTCGGCACGCTGTCAATCATCTTCGTGGCGGTATCCATTGTCAACATTGTGCTCATCTCGCTGGACCTGGGGGATGTGGGTGGGAACGGGATCGGTGACGAGAGTGGGGGCAGTGACGGGGGTACACCTTTCTTCGTGGATGCACTGGAATATGTGTGCGTGGTGTGGTTCACTGGCGAGCTGGTGCTACGCTTCATCTGCGTACGCGACAAGTGCCGCTTCACCCGTAGTGTTCCCAATGTGATCGACCTGCTAGCCATCCTGCCCTTCTATGTGACTCTGGCAGTTGAGATTCTGCACGGTGGCTCTACAGAGCTGGAGAACATGGGCCACGTGGTGCAGTTGCTCAGGCTCATGAGGTCCCTGCGCATGCTCAAACTGGGACGCCACTCCACAGGCCTCAAGTCCCTGGGCCTGACCATTGCCCAGTGCTACGAAGAGGTGGGtctcctgctcctcttcctctccgTGGGCATCTCCATCTTCGCCATGGTGGAGTTTGCCCTGGAGCATGACATCCCCGGTACCTCATTCAGCAGTGTGCCGTGTGCCTGGTGGTGGGCCACCACCTCCATGACCACGGTGGGCTACGGAGACATCCGCCCCGACACCACCCTGGGCAAGGTGCTGGCCTTTCTCTGCATCTTGTCTGGCATCCTGATCTTGGCACTGCCCATCGCTATCATCAACGACCGCTTCTCTGCCTGCTACTTCACTCTCAAGATGAAGGAGGCGGCGCTGCGGCACGGGGAGGCGCTCAAGAGGCTGGCGCGGGGTTCCCTGGGTGACTCGGAGGTGGGTGGGGCagcaaggggaggaggggtgaacCTGAGAGATGTTTACGCCAGGAGTGTGACGGAGATGCTGAAGctgcaggggagggagagggccAGCACGCGGAGTAGTGGAGGGGGTGAGCTCTGGTGGTAGTGTGGAAGACGGACCACAAGGGCAGCTGTGGAGAAAAAACTATGGAAAAAGTTAAGTCAATTGGGTTAAAGATGGAATCTGCAGTTGGGGGAAACAACACTACTGGCTGCTCCAccactgttgtttttgttgctgaGCTGAGGAGCGTCGCGAATCGTGGTAAAAATGTTAATCGCTGTGCTCTTATCGCACGTGCAATGAAGGGCGAAAAACATTGTAAGCTGACGTGGttgtttcaccattaaggattccagctttaggAATACCATCAGAATATGACAACAGTGTGTACAATGTATAGGACATATCTAAAGGATGATGGGGGGACAATTACTTAAATGTCACCTGAAAGATTTGCCACAACTTTCATGCCTAACCTTTTTCGGTGTTGTGTTCTCTGACACAACTGTTGCATGTTCTGTCTCCTCTGTATGTgacacatgaccatctgatcatttatcactccagtgttaatctgcaaaattgtaattattcgcctaccttctcatgccttttgcacacaatgtatatagactatttttttctactgtgttattgac

Function

GO: NA

KEGG:

id description
K04934 KCNV1, KV8.1; potassium channel subfamily V member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151280 lncRNA upstream 803 30531809 ~ 30532025 (+) True G131304
TU151256 lncRNA upstream 29482 30502809 ~ 30503346 (+) True LOC110534660
TU151255 lncRNA upstream 29552 30502746 ~ 30503276 (+) False LOC110534660
TU151271 lncRNA upstream 44863 30487745 ~ 30487965 (+) True G131295
TU151269 lncRNA upstream 45889 30486700 ~ 30486939 (+) True G131293
TU151291 lncRNA downstream 5662 30548235 ~ 30548448 (+) True G131315
TU151250 lncRNA downstream 14993 30557566 ~ 30572768 (+) True G131279
TU151387 lncRNA downstream 38399 30580972 ~ 30581270 (+) True G131406
TU151398 lncRNA downstream 47340 30589913 ~ 30590180 (+) True G131416
TU151403 lncRNA downstream 50092 30592665 ~ 30593696 (+) True G131421
XM_021558391.2 mRNA upstream 2482 30518896 ~ 30530346 (+) False LOC110486625
XR_005036237.1 mRNA upstream 2482 30518896 ~ 30530346 (+) True LOC110486625
XM_021558399.2 mRNA upstream 2483 30518443 ~ 30530345 (+) False LOC110486625
XM_021558415.2 mRNA upstream 2483 30518443 ~ 30530345 (+) False LOC110486625
XM_021558425.2 mRNA upstream 2483 30518443 ~ 30530345 (+) False LOC110486625
XM_036945505.1 mRNA downstream 75430 30618003 ~ 30746151 (+) False si:dkey-22o22.2
XR_005036284.1 mRNA downstream 75430 30618003 ~ 30746151 (+) True si:dkey-22o22.2
XM_021558527.2 mRNA downstream 256207 30798780 ~ 30807966 (+) False LOC110486724
XM_036945539.1 mRNA downstream 256207 30798780 ~ 30807966 (+) False LOC110486724
XM_036945545.1 mRNA downstream 256207 30798780 ~ 30807966 (+) True LOC110486724
TU150298 other upstream 742997 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 838977 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 891732 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 1047698 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 1054698 29477617 ~ 29478130 (+) True LOC110534631
TU151478 other downstream 157609 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 205482 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 748897 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 817863 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 817863 31360436 ~ 31366322 (+) True eaf1

Expression Profile