RNA id: XM_021558487.2


Basic Information

Item Value
RNA id XM_021558487.2
length 2631
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC110486705
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30748055 ~ 30758543 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACTTGCCATGGAATGGTCATATATATAAAGATTGGCGCCGGCGCGACAGCTGATCATTCATTATTCGTTCATTCATTTCTGAGGTGGATCATTTTCGGTGGAACTCTGAAGCCTTCAATTGACAGAATGGCTAACGTTAGACGCAGTGGTCGCATCACATTGAAAGCAAGAGATGAGAACGCACCAGAAGAGAATGTCAAGATCAGACGAAAAAGAAAATCTGAGCCATCCAAAAAGATGCCACCCGCAGTGAAGAAACAAAGCTATGAAATTCAGAAACGGTGGTCAGAAGAAGGGGCAAGTCCATGTGTCCTCGTAGAAACGCCACACAAGGAGCTGGAGATGACAAGAGACCGGTCTAGCTTCAAGCAGTTCCGATTCAAGAACATCTTCATCAAGACCTCACCGCTGCCCTGCCTCAGCTGGGCCAGCTCAGATGACGTGTGGATTAAGATGCTGAACAAGGAGCTGAAGTATGTCCATGACAAGGGCTTCCTACAGCAGCACCCCAAACTAAAGCCCAAGATGAGGGCCATTCTCCTGGACTGGCTTCTAGAGGTGAGTGAGGTGTACACTCTGCATCGACAGACTGCTTATCTGGCTCAGGACTTCTTTGACCGCTTCATGCTGACACAGGACGATATGGAGAAGGACCGACTGCAGCTCATAGGCATCACAGCCCTCTTCATCGCGTCTAAGATGGAGGAAATCTACCCTCCAAAGCTCCATGAGTTTGCCTACGTTACTGACGGCGCCTGTGAGGAAGATGCGATCCTGGAGATGGAACTTGTCATGTTGAAGGCGCTGAACTGGAACCTGTGTCCAGAGACAGTGATCACATGGCTTAAGCTCTATGCTCAGGTGGAGTCCCTAAAGGATGGCGTCAACTTCCTGGTACCTCAGTTCTCTCAGGACACCTACATCCAGATCACACAGCTTTTAGACCTGGCCATACTGGACATCAACTGTCTGGACTACCAGTATGGGATACTGGCTGCTGCTGCCTTCTGCCATTTTTTCTCATTTGACGTTGTCCACAAAGTATCAGGTCTGACGTGGGATAGTATTGCTCCCTGTGTCCGGTGGATGAGCCCCTTCATGCGCACGGTCAGCGCCTGTCCCAGAGCAGAGCTCAAAGACTTTAAGAAAGTGACGTCTGACGACAGACACAACATCCAGACCCACGTAGACTACCTGTCCATGCTGAGCGACGCTCACCAGAGGCAACCGGACAGCCAAGACAGTCTGTCGCCTGCTGCCATAGGAGGGATATTGACTCCACCAAAAAGCACAGAGAAACCAGCCAATCACTGAGCCCCAGGGTCTCCTCGTGTTGATCTTCTGGCCAACCCGATGAAGGGAGAATTCCCTAGACGTCACGCCTGACCAGTCGGAGGCCGGGAAACTTAACTTCGGAACCTCATCCTCacgtgaccaatcaaatttgccTTTTGGTAATAACTCACCTTTGTGTAGCATGTTAAGAGGTGTTATTTTACTTTATATACCAAGCTGGATATCAGAGTATATATGCAGTACAACCATGGAAATTAGCTCATGGTTACTATATTGACTTATTTAGTCAAATGATTGCAACAAAAACCCTGTTCTCATAATCTTAATCCCCAGAATTAGAATTTTACATGGAGATAATTTGAGGTGAATCAAATCTTTCTCCATAGGAAACATGTCTGCTGCTCCCTCTTTTACTTGAAGCTGAACATCTCAATACATGGGATGTTTTGATAGCTAAAAAGCGAATATTTTATTTGGTACATAATACACAGTTGAGTTGCTCAACTCAGTCTCTTAGCATTGTGGTATCGTATGTATTTAGTGCTGTTTAGTCTAAATCTGGGTACTCCTGGGAAAGCTCAGCCGTACAATAACGCCGAAAGAAGTATTGATGTTTGCTGTGGTTACGTTTGAACATTTGAGCCGTTTTGAAAGGGTTGTGCAGGGTTAACTGTTTACGATACCATCTTGAGCACCATTTTTGAACGTATGTATTCTCTCCACTGTGAACGACTCACTTCCATGTGCCTGGTGCATTCTCCTGCCACAACACATTCCTGGAACACTTGACTTCAGTAGTTTGATTTTAGGCCTCTTGGACCAATTTACAACCATGTCATTTTAAACTTGTATTTATTTGTTCATTTAAGCCTTACAATGTTTTTATCTCCGTATATACATTCTTCATAGGGCTATGAATTCAGTTCTTTAACAATGCCAAAGGAAGGCAACCTATTTAAGTCACGGGATGCATGTTATTTATGATTTTGACattgttatggggggggggggtataatgcAGTTACATATGAAATGTTATGTTGCGTAGTTTTGCGCTAGCCTGTCCGTGGTGCCGTAGTTGAACTAGTATGGTGCTGTAAAGACTTGAGAACCCAGAGGCTCCAGTGGAGGGCTCTAACACCCAGTCTGTCCAGCAAACCTGTGACTGTCAACTGAACCCTTCAGTGTTGTGCAGATGCCTGCCGAGGCAGCGGTATACAAAGAACCATGTTTAAACTGTAAATACCCATGTGTATATGTTATGTACATAAACTGAATGTTCTGTTTTCTAATGGGAACATGAAATGTATTGAATAAATGAAATGGAAATTAA

Function

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K06626 CCNE; G1/S-specific cyclin-E1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151635 lncRNA downstream 16754 30730724 ~ 30731301 (-) True G131630
TU151634 lncRNA downstream 18408 30729432 ~ 30729647 (-) True G131629
TU151633 lncRNA downstream 19081 30728577 ~ 30728974 (-) True G131628
TU151625 lncRNA downstream 28065 30719750 ~ 30719990 (-) True G131620
TU151624 lncRNA downstream 28345 30719394 ~ 30719710 (-) True G131619
TU151677 lncRNA upstream 51781 30810324 ~ 30810727 (-) True G131661
TU151683 lncRNA upstream 56130 30814673 ~ 30815862 (-) False G131663
TU151680 lncRNA upstream 56220 30814763 ~ 30815862 (-) True G131663
TU151740 lncRNA upstream 156795 30915338 ~ 30918439 (-) True G131712
TU151755 lncRNA upstream 342436 31100979 ~ 31101745 (-) True G131723
XM_021558465.2 mRNA downstream 189095 30557560 ~ 30558960 (-) True gbp
XM_036945463.1 mRNA downstream 230028 30509860 ~ 30518027 (-) True LOC110486664
XM_036945453.1 mRNA downstream 230261 30509858 ~ 30517794 (-) False LOC110486664
XM_021558444.2 mRNA downstream 230319 30509858 ~ 30517736 (-) False LOC110486664
XM_021558436.2 mRNA downstream 230322 30509858 ~ 30517733 (-) False LOC110486664
XM_021558542.2 mRNA upstream 2742 30761285 ~ 30773403 (-) True LOC110486727
XM_021558501.2 mRNA upstream 20916 30779459 ~ 30798791 (-) False nagpa
XR_002468099.2 mRNA upstream 20916 30779459 ~ 30798791 (-) False nagpa
XM_021558514.2 mRNA upstream 32261 30790804 ~ 30798791 (-) True nagpa
XR_002468109.2 mRNA upstream 131272 30889815 ~ 30896340 (-) False c2h8orf37
TU150630 other downstream 869487 29869046 ~ 29878568 (-) True LOC110486376
TU149442 other downstream 2270224 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 2437323 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 2598069 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 2981523 27766157 ~ 27766532 (-) True G129250
TU151687 other upstream 131150 30889693 ~ 30895983 (-) True c2h8orf37
TU151689 other upstream 138483 30897026 ~ 30899564 (-) True trnae-cuc
TU152152 other upstream 433876 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 433923 31192466 ~ 31195186 (-) False LOC110486852
TU152142 other upstream 433923 31192466 ~ 31196292 (-) False LOC110486852

Expression Profile