RNA id: XM_021558542.2


Basic Information

Item Value
RNA id XM_021558542.2
length 3837
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110486727
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30761285 ~ 30773403 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGTTCGCCTCAACAATAACAAAGGGAACAGTGGGACCTCGGAAAGGCTCGGAAAAGTAACGAACTGTGTTGTTCCGAAAACAAAGGTCCATGTACTAAATTTCTTCCGTgaagaaaacttttttttatatTCTCGAAAAGATACAATCTACCTCAAAGGATTTTATCACTAAATATCCGTCCTTTGCTGTTAACATTTTTTCTTGCCGCAGgtcctttgTAATTTTGCACACGTCGAGGTGAGCTATGACCAGACTTTACACAGCTCCCCTCAGATGATAGACATCCGTACCTTATTGAAGCACTTTAACACCTGCAGCTGATGACCAAAACGCCTGTTCCTCGCACCGCTCAGCCCCCCCCCTTGGTCcctctgtgcccccccccaaggAGTTCCAGTATGTTCCAGAGGCTCACCAGTGTCCTGTTCGGGGACAATGTGGAGGAGGTGAGCCGGGGAGGCCCTGGAGAACAGGGCTTTGGCCAGAAGGAGGAGGGTGAAGAGTGGATCCTGGTGGACTATCTGGCCGAGGCCTGCTCTAGCCCCTGTGGTGATGGCCTGTCTGAGGTGGACCTGacttcagaggaggaggaggaccttgTGGTCGTCCCCTCTCCCATCGCCAGCTCCCCCATCCGCTATGCCTCCTGCTCCTCCCTGGACTCCACCGCCGATATCGAGGATGGGGATCCCGATGAGGAAGAGGGGGGTTTCCTGTGCCCGGAGGCCTGTTCTCTAGAGGAGAGCTGGTTCGTCACTCCCCCACCCTGCTTCAGCGGGGGGAGGAGGGGCAAGCCTATGGTACTAGAGACCAGTCCCCTGGAGAACCTGCTGATAGAACACCCCAGCATGTCTGTGTACACCACCCACTGTCCCCCACGAATCTCCCTCAAcctccctctcaatctctgtctcccccttgttGACGTACCTGCCGCCGTAGTCAAGGAGCCGGGTCGACGTTCGCTTGACACCCCCTGCCACAGGCCAGAGATGGTAGTGCAGCGCAGAGCCGGGCTCCATGCTGGCTGCTATGCAGCAGCCGTCTCAGCCCGGGCCTCAGGCCTCCTAGACCAGGTCCAGCAGCACGGACGCCTGGCCCAAAGGGTACGTGGCGCCGCCCAGCACCAGCTCCTCTCCCGCAACGCCCTACGCCGCCTCAACCTGCTGCGCACTAGAGGGGCCAAGCAGGCCAAGACCACCACCACCTATCTACACCAGCCTGGCCAGAGGCACCTCAACTACTGAGGTCCTGGCCCTATCCCTTACCCTCCATCCATCAATTCATCCATCTGTCTCAACCTGGATCCACGAAAAAGAGTTAATCCTGCAACATGCTCTCCATCTTCCCTCCATCCACCGATCCTCCACTCTGGAATGAAGAGACGTGATGAGGACTCCTTTAGAATCAATGCCATAGGTCACTTTACTCCGCTGCAGGTTCCCACCACCACATGGTAACTGGGAGAGACTGGTTCAATCAGATATTACACCTGTAGCGACACTCTCCGCTTTCACCCACACTGCAATGTTTGTGTGATGTCATAGTGTGGCTGTATGCGGCCATAGAATGGTTGTGTGATGTCATTGATTGATATCATGGAGTTGCTTGTATGCTGTCGTAGTGACATTGTAAGTGATGTCATTGAGCTGTTGTATGCTGTCATAGAGTGGTTGTGTGCTATCAGAAGAGGGTTTGTGTCTTAATAGAATGACTGTGATGTCTTTAGAGTAGGAGTAGGCATTTAGAAAAGGAGCATGTCTTTCACTTGTAATTAGGACAGTTTATTAACAAAGTTGTTTCTAATGTCCCTCCTATGAAATTGCTTCCTCTATCACTTCATGACAAACTAATATAATTTGTCAACTTACTTTTCAAAATCATCACCCTCTCTTGACTATGGGTGAACCTGCCTTGAACTTAGTAATTCAGTACTTTCACAATATTGATTGAGGAAATGTTGGTCAAATACTGGGTTAAATATCACTTAACGCCTTGTTATAAAAGTAGAATTTAAgatgaaaaataaatgtaaaatgtattataAAAAAAACGtccaaaatatttttaaaaagaaaAAACCGTATATTACATATCAGTATGAAGTTAGTATGAGTGTTTATCTACATAGGTATGTTTGTAAGCAGTGGTGTGACTATGTTAGTGTGTGATTTGTTGCATGGTTGTATAGCGCTagaaaacagaaaaaaaatgtgtttttgtatctTATCTCTCATTGTTTGTTCTAAATCTGCAGTCCACTTCTCAGGGTCATAGCCAATCACCTTTACACTTTACTACAATGCAGATTACTTGACCGATGTTAATTGTCTTTGTACATACTGGAGACCTTCCAAATTTGTCATAGTGTGCTTTGCCTTGTGGTAATGTTTGTGATCAATGATTGACCTTTTAAAAGAATCGTGTGCGTCTCGAGAAAATTGAATTTGAACGTTTGCTTGTCCAAGGACTGTGAAAATGAACTCCTACTCTCTCAATCGACTGTTATAACCCCAAGATGGAGTGAAACTGTCTTTTTTTCAtttttgtttatatattttttctgtgtACTTTCCATTGTTTTGAGATAGATATTTACCCTGTTCTTTATTTGCTTAGTTACATAACTTAATAATATTATGATAAAATATCAACCAAAAAAGTAGCGGCAAACTCTAACCTTGCAATAGTTTATATTACTATTGTTTTTGCTTTTACAGTATATTCTTCTTTACTTTAACAATGTTTGCAAATTGAAGACTTTGTTCTGAAATGGTCAAGTTTGTGACAACATGAATCTGTGCGCTCTTGTGGTAAGAAAGCACAGAGAGACACAATTCAAACACCTAAGTAGCCTATTTTAAGTTTCACAGAACCTCTAAAAGTCAAGTATCCAGGGCAAACTCAATCATTTACATGACCTAATTATTATGACCTTATATTATGACCTAATATCACCTGTTTCTTTGTACTTATTGGGGGAAatacacagtacatacatacTCAGATGTATTTAGCATGGTAGCATTAAGAAGCACTAAGGTGGTTTTGTTTGGTTTTGTCTATATAGTTGTAAACTGATTATAGTGAAGTGATTTAAGCCTAGTCATTGTATTTGTGTATCTTTTTTATTTTCAGATGTGTCAGATTGCAAAACTTGCATCATTTGACGCGTCAATTTTTGTACTGCATTGTTGTGACACGGGCAACAGGACGAAGGGAATGGAGGAGATGGCTAAGTCCTCATTTTTGATGTGTGAAGCTGGAAGGAGACATTTTGTTTTGTCCTCAGCTGTCTGTATGAGCTCTTGATGATAATAACAGGGATTTGTATTTTGTTTTATGCCTTGAATTTGTTGTGGATCACGTGCCTTCCAGGTTAAACAGTATAATGACAATGCATTAATGAAGAACTTGAACTGTTGTCCAAAAGGACAACACATACAAAAGCAAATCAACTATGCATACAGAAGGTAGCTTCTCTTCGTGAACCACCCAGCCCATGTACAGCTTTTATACACAAATGTAGCAAACCTGTTTTCTCCTGTGTGAAGAATATTTGGTGGCATTTTTTTTAGACTTTTGCTTTGATTTAGTTTACTGGAATAATACAGCACTTTGCCAAAAAAGTGTAGGAATTTGAGCGTTAACTGTTATTTATCTACTTAACTGATCGCATTATTTTATTTTGGATGTATGAGAGATCAATTCACTCTGTTTTTATGGTCAGCAAAatttgcaaatgagaatgtgGTAGTCTGTTCTAAAACTGTAATACATGATCTGTTGTCATGATGTAAGCCACAGTCTACAATAAATGTTTTCATACACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151635 lncRNA downstream 29984 30730724 ~ 30731301 (-) True G131630
TU151634 lncRNA downstream 31638 30729432 ~ 30729647 (-) True G131629
TU151633 lncRNA downstream 32311 30728577 ~ 30728974 (-) True G131628
TU151625 lncRNA downstream 41295 30719750 ~ 30719990 (-) True G131620
TU151624 lncRNA downstream 41575 30719394 ~ 30719710 (-) True G131619
TU151677 lncRNA upstream 36921 30810324 ~ 30810727 (-) True G131661
TU151683 lncRNA upstream 41270 30814673 ~ 30815862 (-) False G131663
TU151680 lncRNA upstream 41360 30814763 ~ 30815862 (-) True G131663
TU151740 lncRNA upstream 141935 30915338 ~ 30918439 (-) True G131712
TU151755 lncRNA upstream 327576 31100979 ~ 31101745 (-) True G131723
XM_021558487.2 mRNA downstream 2742 30748055 ~ 30758543 (-) True LOC110486705
XM_036945520.1 mRNA downstream 8568 30748055 ~ 30752717 (-) False LOC110486705
XM_021558465.2 mRNA downstream 202325 30557560 ~ 30558960 (-) True gbp
XM_036945463.1 mRNA downstream 243258 30509860 ~ 30518027 (-) True LOC110486664
XM_036945453.1 mRNA downstream 243491 30509858 ~ 30517794 (-) False LOC110486664
XM_021558501.2 mRNA upstream 6056 30779459 ~ 30798791 (-) False nagpa
XR_002468099.2 mRNA upstream 6056 30779459 ~ 30798791 (-) False nagpa
XM_021558514.2 mRNA upstream 17401 30790804 ~ 30798791 (-) True nagpa
XR_002468109.2 mRNA upstream 116412 30889815 ~ 30896340 (-) False c2h8orf37
XM_021558578.2 mRNA upstream 116538 30889941 ~ 30896340 (-) False c2h8orf37
TU150630 other downstream 882717 29869046 ~ 29878568 (-) True LOC110486376
TU149442 other downstream 2283454 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 2450553 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 2611299 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 2994753 27766157 ~ 27766532 (-) True G129250
TU151687 other upstream 116290 30889693 ~ 30895983 (-) True c2h8orf37
TU151689 other upstream 123623 30897026 ~ 30899564 (-) True trnae-cuc
TU152152 other upstream 419016 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 419063 31192466 ~ 31195186 (-) False LOC110486852
TU152142 other upstream 419063 31192466 ~ 31196292 (-) False LOC110486852

Expression Profile