RNA id: TCONS_00027631


Basic Information

Item Value
RNA id TCONS_00027631
length 3796
RNA type mRNA
GC content 0.40
exon number 13
gene id XLOC_013820
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 6938289 ~ 6957404 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

catcatacgCTGCTAATGGTTACAGGCTGCTGGATTACTGCGTCTCTTGTCTTGCACCGTTAAGAAAAAAACAGCAATCGTGTTATAAATAACCCTACTGATATTTACTAATCATTCAGCCAACGTCTAAAAATGTTTTATACCTGCGGTCCCAATGAGGCAATGGTGGTGTCAGGTTTCTGCCGTTCTCCACCAGTCATGATCTCTGGTGGGAGAGTGTTTGTTTTTCCATGCGTCCAGCAGATTCAAAGGATCTCTCTGAATACTCTGACGCTGAATGTAAAAAGCGACAAAGTGTACACACGTCATGGAGTGCCCATCTCCGTCACTGGAATCGCACAGATGAAGATTCAAGGACAGAATAAGCAGATGTTGGCTGCAGCGTGTCAGATGTTTTTGGGCAAGTCAGACAGTGAAATTGCCCACATCGCCTTGGAAACGCTGGAGGGCCACCAGAGAGCCATCATTGCTCACCTCACTGTGGAGGAGATCTACAAAGACCGCAAGAAGTTCTCCGAGCAGGTGTTCAAGGTGGCTTCATCTGACCTGGTGAACATGGGCATCAGTGTGGTCAGCTACACACTCAAAGACGTTCACGATGACCAGgATTACCTGCACTCTTTGGGAAAGGCCCGTACTGCACAAGTGCAGAAGGATGCTCGTATCGGTGAAGCTAAGAACAAAAGAGATGCAGTAATCAGGGAGGCTCATGCTATGCAGGAGAAGGTGTCTGCTCAGTACATGAATGAGATCGAGATGGCTAAAGCGCAGAGAGACTACGAGCTGAAGAAGGCCATCTACGACATTGAGGTCTTCACCAAAAAAGCGGAATCTGAAATGGCCTATCAGCTCCAGGTGGCGAAGACAAAGCAGCGGATCGAGGAGGAGAAGATGCAGGTGCTGGTGGTGGAGCGATCGCAACAAATCACGCTGCAGGAGCAGGAGATCTCACGCAAAGAGAAGGAGCTGGAGGCCAAAGTCAAGAAGCCCGCCGAGGCCGAGCGATACCGCCTGGAGAAACTGGCTGAAGCCGAGCGCCTTCAGCTCATCATGGAGGCAGAAGCAGAGGCTGAATCCATCAGAGTGAGAGGAGAGGCAGAAGCGTACGCTGTGGAGGCTAAAGGTCGTGCTGAAGCAGAGCAGATGGCAAAGAAAGCTGAAGCCTTCCAGCACTACAAAGAAGGTGCAATGGTGGACATGCTGCTGGAGAAACTTCCAATGATGGCTGATGAGATCAGTAAGCCTCTGTCAGCTACAAATAAGGTGACTATGGTCTCCAGCGGAGGTTCAGAGATTGGTGCTGCTAAACTGACAGGCGAAGTCCTCGACATCATGACCAAACTGCCTGAAACCATCGAGAAACTGACCGGCGTTAACATCTCCCAGGTGGCCCGAACCGGCTGAAGCAGTTCTCCGACATGAATACTGTATGCATGCTTCAGaaatcttttacatttttctcTGACTTCTCACATTTTCCTTCATGTTCGTTTTCTCCAACTTCCTCCTCTTTCAATAAGTCCATTTCTACCTTCATCATTCCTATCTTCCACTATATCTCTATTGTTTCccatgtttctctctctctccacttcCTGTCTGTCTTTGCCTTGCTGCCAAAACCCAAAGTGCATTGAAATCAAAACCTCCAGGGAAGAAAGCTGTTCTTTATATTTTGTAATGCAATCATAATAAGACAGTGAAGTCCAAGTATCCACTGAAAGCCATTAGTCGACGCAGCTTTTATCACATTCACCAGTCGTTTTTCCCTATAGAGTGCTTTTACATGTGGCCAGTGCATTCAGAGCTGTTATCATAGCTGAGCTTTCCATGGGAAAAGCCAAAGCAACTTGAAGGGAAACACGTTTCTGTTTCTGTGAGTGTAATACTTTCACTTTACCTCAGCGGTGTGTGTTTTAGCTATATTTGTTAGACACGACTACATTATTATAGGTTCAAATAGTACTCTGAAGATACTGCCAGTGTTTGAAGTGTTTATTCATATTATATCGAACAATCGAGTGTCTTTATATGTCTAGAAGAACTGTAGGTCGGtaattattctatttatttgaCAGATCTGTCATTTTAATGCTCTGTGCTGTCGTTTGAAGTGTTTTCACGCTTGACTGAAGAGTCTGAATATAGAAATCTGTACTGTTTCGTCCTAAAGAAGGCCATGTTGATGATATTGTGGCCATGTAGCAAATTTTTTAGGACTAGATTTACCAGGGAAACATGTTTGTTCTATTTATCTGTGTTCATCGGAGGATTTAGATAAAgactatttaaagggatagttcacccaacagtTCAAATTTGCTCATTATTTACGAGTGGTTatatagagcagtgtttctcaaccacgttcctggatgACCACCAGATCTGCACATTTCCCCATGtgtccttaaccaaacacacctgattcagatcttcagctcattagtagagattgaaagacctgtaatgggtgtgacagacaaaggagacatcaaagcatgcagtgctggtggtcctccaggaacgtggttgagaaacactgatatgAAGGGCTTTGAGTTTAACAACAGCGCATtcctaaataaaatgttttattattattattattattataaacatgatGACGTATTTTGATAAAAGcggaaaaccggtaaccattgacttcaattgtaggaaaaataaatactatagaagtcaatggttacaggtttttaacattcttcaaagtatctttttttgtgtttaacagatgaaagaagGTTTATAACAAGTAAAgagttaaaaaataatgacaattttgaatttttgtgtgaactacccatGTAAAATGGCTTGaatattacataaaaagagaTATTACGTTcaatactttttattaaatatgattctagttgatgatttgtttttaattatacagTATTCAATATTGGTTATACTATGTAAATCTTTGATTACATCATGATTGTTGTGAATGttgttttttaagtgtttaaatgtcagtacaatatattgtttttttaatgcacatttcatAAAACACGTCATAATATGttcattacatttaatatttactaaCATTATTACGATGTATACACAGTTACGGTGTTTACTAGATGTTGTTACGTAACGCAAACTGAACTAACCCCACATTTACGACACACATTTTTACACTCTTCATGATTAATGGATTATTATGGCTGATATTTCTGATGCATCTTATGAACGCTAAATATGAAGGCCTGTTTATTTACTATTTGTGGTAAGAtgtttgttaaagggatagttcacttcaTTCCCCTTTTACTCAAATTCTTCCAAAGGTGCTTTTTTCCATTTGacttaaaagaagatattttgaaaaatgttggaaatctgtaaccttTATTACTATTGAAGTTAATGGTCACAGacttctaacattcttcaaattatcttcttttgtgttcaacagaagaaagaactccATAAAGGGATAACAGatgtttcatttttgtgtgaactatccctttaagcatatACCGTAATGTTTGGATAGATTATTAGTATTCTAGCTTGGGCATTAGACACTATGTAGGATAAGGTTGCGGGTAAGAAAACCTATATTTGTCAATAGAtgcttttttctattttatacaGTATCTATATACTAATATCAATCACTCATGTGAAATGTTGCAGTTTCAACATGCATGCAAAGACTAACAAACCAAAACTGCTTTACTGTCTATTTGTGCTTCTATAAATGCCTTAAAGTAAACTCTCTCtctactaaaataaacatttaactaaaGTC

Function

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0070528 protein kinase C signaling biological_process
GO:0045807 positive regulation of endocytosis biological_process
GO:0002090 regulation of receptor internalization biological_process
GO:1901890 positive regulation of cell junction assembly biological_process
GO:2000049 positive regulation of cell-cell adhesion mediated by cadherin biological_process
GO:0005768 endosome cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016600 flotillin complex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-020430-1 Predicted to be involved in several processes, including positive regulation of cell-cell adhesion mediated by cadherin; protein kinase C signaling; and regulation of endocytosis. Predicted to be located in endosome and membrane. Predicted to be part of flotillin complex. Predicted to be active in cytoplasmic vesicle and plasma membrane. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human FLOT1 (flotillin 1).

Ensembl:

ensembl_id ENSDART00000139122

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029867 lncRNA upstream 491980 6440411 ~ 6446309 (+) True XLOC_013812
TCONS_00029866 lncRNA upstream 493796 6440411 ~ 6444493 (+) False XLOC_013812
TCONS_00029865 lncRNA upstream 532081 6383905 ~ 6406208 (+) True XLOC_013811
TCONS_00029694 lncRNA upstream 624785 6313208 ~ 6313504 (+) True XLOC_013810
TCONS_00029864 lncRNA upstream 878518 6049221 ~ 6059771 (+) True XLOC_013808
TCONS_00029868 lncRNA downstream 30334 6987738 ~ 6988985 (+) True XLOC_013821
TCONS_00027641 lncRNA downstream 115457 7072861 ~ 7074600 (+) False XLOC_013826
TCONS_00027642 lncRNA downstream 115498 7072902 ~ 7097857 (+) True XLOC_013826
TCONS_00029869 lncRNA downstream 161544 7118948 ~ 7119446 (+) True XLOC_013827
TCONS_00027650 lncRNA downstream 203840 7161244 ~ 7161972 (+) True XLOC_013830
TCONS_00027630 mRNA upstream 4090 6928229 ~ 6934199 (+) True XLOC_013819
TCONS_00027629 mRNA upstream 14599 6918135 ~ 6923690 (+) True XLOC_013818
TCONS_00027627 mRNA upstream 22043 6910384 ~ 6916246 (+) False XLOC_013817
TCONS_00027628 mRNA upstream 22713 6914095 ~ 6915576 (+) True XLOC_013817
TCONS_00027626 mRNA upstream 29607 6904314 ~ 6908682 (+) True XLOC_013816
TCONS_00027633 mRNA downstream 33566 6990970 ~ 6994702 (+) False XLOC_013822
TCONS_00027634 mRNA downstream 33566 6990970 ~ 7000522 (+) False XLOC_013822
TCONS_00027635 mRNA downstream 33568 6990972 ~ 7000603 (+) True XLOC_013822
TCONS_00027636 mRNA downstream 43766 7001170 ~ 7007154 (+) True XLOC_013823
TCONS_00027638 mRNA downstream 86230 7043634 ~ 7051481 (+) False XLOC_013825
TCONS_00027622 other upstream 310999 6627173 ~ 6627290 (+) True XLOC_013813
TCONS_00027621 other upstream 842557 6095618 ~ 6095732 (+) True XLOC_013809
TCONS_00027599 other upstream 1856431 5072925 ~ 5081858 (+) False XLOC_013791
TCONS_00027586 other upstream 2126753 4800588 ~ 4811536 (+) True XLOC_013785
TCONS_00027583 other upstream 2161876 4776292 ~ 4776413 (+) True XLOC_013784
TCONS_00027637 other downstream 77802 7035206 ~ 7035320 (+) True XLOC_013824
TCONS_00027648 other downstream 197097 7154501 ~ 7155699 (+) False XLOC_013830
TCONS_00027653 other downstream 217299 7174703 ~ 7179665 (+) True XLOC_013831
TCONS_00027658 other downstream 349063 7306467 ~ 7306563 (+) True XLOC_013837
TCONS_00027663 other downstream 526813 7484217 ~ 7484331 (+) True XLOC_013841

Expression Profile

//