RNA id: XM_036945578.1


Basic Information

Item Value
RNA id XM_036945578.1
length 4202
RNA type mRNA
GC content 0.44
exon number 3
gene id plekhf2
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30821776 ~ 30844299 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCTGCCTACTTCACAACAGGGTCTGTTGACTAATCCTAAAACAAATGATGGATAAGAAAAATAAAGACCAAAAACCATTGTACGCCAGTGAGCCACAATATCCACGACCCGTCCTGTTTATGACTGCACGTCCCAGTCCAGCACTCACTCCCATATTTTTTTGAACAAGTCAAGTGACGCCACTACTCCCTGTAGCCATATTGTTATTACTTTCAAGGCAACGAGTGAGCCGCTATCCGCGGACAGCAAGGTGGAGGGCGACTGACAAGTGTGGAATTTCATTAAAACGAAGCTACAAGTTACTTGTAAATTGCTGGCCGAAGTTAAAGTCGGgcACGGCTCTAGATCTCATCTTCCTCTTGACTGCAGCTGAAGCTTGTCGTCATGGCAGTAGGCAGAGAGGCCTCACTAACAGGGCTAATATGTCTCTAAACAATATCCCCTCCAGGCAGGGGCACACAAGGCCCTATACTCCATGGCTCCATATTACCTGTCGTCAATAGTGAGCTCTCTGGGCTAGGTGGCTAATGCACAGATAACTGTGAGCCTGTGTGCCCTCCCTGCCTGTAGCTTGGCCCCAGTGCCTATGTTAGTGTTAGCTTCTGCTGCTAATTAGCACAATCCCAGAGCAGCAACAGTGGGGCCAGGCCTGGAGTGGCATTGTGTTGCTATGATCCACTCCATATTAGAGATCTGTCAGAGgCGAGGCTAAGATGGTGGACCGGCTGGCGAACAGCGAGGCCAACTCCAAGCGGATCCAGGTAGTCGAGGGCTGCTTCGGCGCAGCGGGCCAGCCATTGGTCATACCGGGGCGGGTACTCATCGGTGAGGGTGTGCTCACCAAGCTGTGTCGCAAGAAGCCCAAGGCGCGCCAGTTCTTCCTGTTCAACGACATCCTGGTGTACGGCAACATTGTCATCCAGAAGAAGAAGTACAACAAGCAGCACATCATCCCGCTGGAGAGCGTCACCATTGACACGGTGGCTGATGAGGGCGACCTGCGGAATGGCTGGCTCATCAAGACACCCACCAAGTCCTTCGCTGTCTACGCCGCCACCGCTACTGAGAAGTCAGAGTGGATGAGCCACATCGGCAAGTGCGTGGGCGACCTGTTGGAGAAGAGCGGCAAGGCGCCAACTGGCGAGCACGCAGCCGTCTGGATACCAGACTCAGAGGCCACCCTCTGCATGCGCTGCCAGAAGATCAAGTTCACGCCCCTCAGCCGCCGCCACCATTGCCGCAAGTGCGGCTATGTGGTTTGTGGCCCGTGCTCTGACAAGAAGTTCCTGCTGCCCAGCCAGTCGTCCAAGccggtgcgtgtgtgtgagttctGTTACCTGCAGCTGGCCTCCGCAGGAGGGGGGATGGGCTTAGGCCCACGCTCGGACTCCTACAGCCGGTCAGGGTCAAAGTTCAACAACGTGTCGGACGACGAAGATGAGGAGGACAGCAGTGACTGAGGAAGGCCCTCCTGACAGCCTTCCATCTTCCCCTTTTAGTAATCAATTAGCAATATTCCACTTATAATTATAGTTTTTTTCTCTCCACAGCAGGGTTTTgaagaaaagttttttttttcttctagctGAAATAAATGCTTTTTAATGATAATATAGTGAAATGCCTGATGGGAATTGTAGTAAGTTTGGTAAAAATATCCCACACACTATTTGTAGTATGGCTGCTTCCTGTATGGCGTGCTCCACAGTCATCCTCTTTGTTTTCCATTAAACAGTGGACCTCACTACAGGAGAGAATGATGCTAGGAGTCATGTAGCACCTCTCATTGTCCTCTCTGCTAATGTCATCCTCTTCTATTATATTCTTGAATTCATTTccgcttttttttattttatttttttatttttttttacagatgaacCTTGGGGTACATGCCTCAATGCTGATATTTCTGCAGGGAGAAGCGATTAGCATTCAGTCACACGTCACATGGTCTACCTACTCATTTCAATATTTCAGGTAAAATACCTATAGGTGCTTTTTTTTCTAGGTTTGTAGCCGCTTCATTATTTTCTAACCTAAATAACCCCTCCTTCACTAACCTCTCAAATGACAAATCAGCTAAAGCGTTATGATTGTATGGTGAAGCTCCTCTAGGTGTGTATGTCTTAGCATACAGTGTTGGCCAACTTTCAGTTTTGAAGTTGAAGAGTTTTTCTACACAGTTTAGCTTGTAATAGCATGTATTTGAAATGCACATATTCAATCATCCCAAAAATGTACCTCACACAGACCTTAATTTTCACACAGTGCCTTCTGAGAAAGTGAGTTGTCTGGGCAGCCCTGTTTTAATGAGATATTGCATCAGACCCTAGTACTGTAACTTCTATTTTGAGGCTGTGTTCTGTCGGTATAACCCTAAGCTGAATAATGGCTGTAGGGAGAAGTTTGTGTGatcattgtgtgtgtgaatgtgctagaaagctTTACTTCAGATATTTTTTACTAAATCATAGAAAACATGCACCTAAAAATATTGTCATGCTTTATAGAGTACTGTCCAGTGTTGGAGATATGTGTTAGGTGTTGGTTTATCTAAAGTATTTGGCAAGTTTCTGGCTGGAGTTTCCACTGAGTGCCTCTAGAGTGCTGTGAGAGCAGAAACTTGACCTGTGGTGatcaggaaatcagtccattGTCTTACTGTGGTCTCTTCAGTATGTGACTGCTTCCTAACCTGCCTTCACAGTTCCAGGGTATCATGACCTGTCAGAAAATAAAGCTGACCTGAACTTGCCTGAACAGAGAATGGGAAATCTTTGCATAACGCACAGGAACTGTACAGGAAGTGTCTACCATCGACTTGTCTCAGAGGAACCAGGACTGTCCCTGCCCCCCTGTGGCCCTCTTCCAACTGTATTTCCCTATAAGGTATGGCCATTCTGTGTCAGCTGACACTGACATGTGAAAGGCTTGTTGGAGGACTAATGATGACCTACCCGCAACCACCATCACTTTTTCACGCTGTGAAGCGAATGTCAAATGCACTAACCATTTCAGGTTTTACACTCTGGGACAGACAGATCTAATTCAATCACTTTCAGTCTGGGCATAGTTTATCTTCCTGTGTTTCCATGGGAATCCTTTCTCTACAATTTTTAAAGCAACTTGTTTTTACACCTAAGCAGTCAGGCTCACAGGTGGCAAAGACTTGAACTAATTTGCAGTCTTTCAGTGTAATATGGAACGTTTAtcctgagatgtgtgtgtttgagtgacagAACTGACAAAAGGGATCatttttctttcctttttttattttttagcttCTCTAAGAAGTAACTGTAGAACCCTATAAAAGTCCATCTCTTTGGCAAGCAATAAGACATGAGACGTCATACAGTACTTCGATGCAAATCTCCTACCCCATTGTCTTTGATTATCAGGTTGTATTGTTGCAGATGCTCAAAATACTACATCCCTCACTCTTGAAGGTTTATCATTATACTCAAACAACAAACCGATATTGGGCACAACTATATTAATGCAAATCCTACCATAATCTGTAGTTTCCTTAactattttttcttcttctttcacCTCACTTAAGGAATATTTTGAAATGACTTCTGTTGATTTTGTATATTTGTATAGTATTTGGGATTTGTTTTGTACAGTATACTATGTAGTTATACAAATGCCGCTGTTTCAGGTCTCTTGTGCTCGTCTCGTCTTCATGTATGGACCGGATTAAACACCAGCACTTTACTCTCTTTCTCTGGAGAGAGGTCGTAAACAAGAGCTACATTGCCGCTGAGACCGTAAACTGACAGGACTGGATTTCCTGTCTGACATCACCTCAGGAGAGTGAGCTAGGGGTACCTACACAACCTGAGAATTAACATTGTACACCCGTTAAGCAAAAATGATGTCTGAACACAGAACTGAGGGAACAATGTGAGATTTCTGAAAAGGAGCATACcatacttttttgtttgttttctttgcCTGCTTATCTGGTTTGGTTTGTTAACCTCTCAAGCCTCATGGAATTGAAGTTCTCTCCATTGCTATCGGTGGTGTTTTTTGTTGTCTTCTCtaaggtgtttttttttctgtTGCCATTTAAATTCTCGTTATAAAAGTCTTAAGGGCTTAAACCTGAATGTAATACAGCATATCATCATTGGATACTAATTTTCTCTGAATTGAAATATATAAATACCATATTGCCTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151525 lncRNA upstream 6443 30814506 ~ 30815333 (+) True G131527
TU151493 lncRNA upstream 59862 30747628 ~ 30761914 (+) True G131502
TU151481 lncRNA upstream 112055 30709496 ~ 30709721 (+) True G131494
TU151480 lncRNA upstream 112292 30708874 ~ 30709484 (+) True G131493
TU151430 lncRNA upstream 210856 30610691 ~ 30610920 (+) True G131448
TU151538 lncRNA downstream 16257 30860556 ~ 30861094 (+) True G131540
TU151557 lncRNA downstream 58505 30902804 ~ 30908231 (+) True G131556
TU151751 lncRNA downstream 211761 31056060 ~ 31056286 (+) True G131719
TU151752 lncRNA downstream 254901 31099200 ~ 31099445 (+) True G131720
TU151753 lncRNA downstream 256449 31100748 ~ 31100965 (+) True G131721
XM_021558527.2 mRNA upstream 13810 30798780 ~ 30807966 (+) False LOC110486724
XM_036945539.1 mRNA upstream 13810 30798780 ~ 30807966 (+) False LOC110486724
XM_036945545.1 mRNA upstream 13810 30798780 ~ 30807966 (+) True LOC110486724
XM_036945505.1 mRNA upstream 75625 30618003 ~ 30746151 (+) False si:dkey-22o22.2
XR_005036284.1 mRNA upstream 75625 30618003 ~ 30746151 (+) True si:dkey-22o22.2
XM_021619612.2 mRNA downstream 6998 30851297 ~ 30856046 (+) True LOC110534679
XM_036945585.1 mRNA downstream 29434 30873733 ~ 30891386 (+) False LOC110534689
XM_036945587.1 mRNA downstream 29434 30873733 ~ 30891386 (+) True LOC110534689
XM_036945604.1 mRNA downstream 292509 31136808 ~ 31146454 (+) False LOC110486784
XM_036945598.1 mRNA downstream 292511 31136810 ~ 31146454 (+) True LOC110486784
TU151514 other upstream 71822 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 121153 30700182 ~ 30700623 (+) True G131491
TU150298 other upstream 1031945 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 1127925 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 1180680 29600026 ~ 29641096 (+) True G130308
TU151868 other downstream 447171 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 516137 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 516137 31360436 ~ 31366322 (+) True eaf1
TU152486 other downstream 1013349 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 1013387 31857686 ~ 31883073 (+) True G132342

Expression Profile