RNA id: XR_002468109.2


Basic Information

Item Value
RNA id XR_002468109.2
length 1140
RNA type mRNA
GC content 0.47
exon number 8
gene id c2h8orf37
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30889693 ~ 30896340 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaaatggttaccaatgtaatttgagttttgctaaaacacaatatcagtcagtgtctgatatatttgtaattttatgtTGGCTATTACCGGTTTTTGTCTCCAATAATATCagcagttgtcgtggccgagtggttaaggcgatggactagaaatccattgggatcttcccgcgcaggttcgaatcctgccgacaacgtgatTTTTTCTCCTGTGATTGGTAATGCCCAGGCGTTTACATTGTATCATAGATAGCCAGTATCTTGTATCACTACACATAAATCGCTAGCTACACGGTATCAATCTTTACCTACTTGAAATGAGGTTACGCCTGTCAATCAAGCACTCCTGTTCATGACAACAGTCAATAAGCAGCAGTACCCTGAAGCTATGGCGGACGATTTGGACGAATTGCTAGATGAGGTTGAAACAAAGTTCTGTCGCAATGTTTCATTGACGCCACAACTTCAAGCTCCCTCAGATTTATCGACGGCTGGGAAATGTTTAACGCAAACTGGGAAAGAAAGAAAACACTGcaccactgacgatacacccagaaaaacggacagcgaagatatagatgcccttctcgaggacatacttgacgatgatttcgattcccttgcgctaaacACTGGACAGCTTCCTAAAATGACGAAGACATTGCCACAGTCCACAAGAAAGTGCTGCCCAGTTTTCCTTGGTGGAAGCTCCATTGCAAATGGTGTAGGAACAGCTGTTTCACAAAGGTCGTGTGATCAGCTGAGATGTATCTCCTGTGACTTTCGGGTGGCCATGTTTGACGATCATGAATGGGACCCCTCTTGTGATTACCTCTTCTTCAGGAACAACATGCCAGACTGTCAGAAGCTGCGGGCTAAGCTGAGGAGAAGAAAAGGGGCGCGGGCGTACGCCTGCCAGTGTAGCTGGCACTCTGCTCGAGACCTCAACGACCTGAGAGAACAGCACCAGCTCAAGTGGGTCTGTGGGAAGCATGAATGGAGAAGCGAAGGTGGTTAAgaccgttgggccagtaaccgaaaggtcgctggtttgaatccacaCGCTAACgagtcctcccggttttgactcttgcctgttttctggactttacccacctgcctgaccattctgcctgccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151683 lncRNA downstream 73953 30814673 ~ 30815862 (-) False G131663
TU151680 lncRNA downstream 73953 30814763 ~ 30815862 (-) True G131663
TU151677 lncRNA downstream 79088 30810324 ~ 30810727 (-) True G131661
TU151635 lncRNA downstream 158514 30730724 ~ 30731301 (-) True G131630
TU151634 lncRNA downstream 160168 30729432 ~ 30729647 (-) True G131629
TU151740 lncRNA upstream 18998 30915338 ~ 30918439 (-) True G131712
TU151755 lncRNA upstream 204639 31100979 ~ 31101745 (-) True G131723
TU152094 lncRNA upstream 255251 31151591 ~ 31152623 (-) False G132020
TU152095 lncRNA upstream 255251 31151591 ~ 31175420 (-) False G132020
TU152093 lncRNA upstream 276616 31172956 ~ 31175420 (-) True G132020
XM_021558501.2 mRNA downstream 91024 30779459 ~ 30798791 (-) False nagpa
XR_002468099.2 mRNA downstream 91024 30779459 ~ 30798791 (-) False nagpa
XM_021558514.2 mRNA downstream 91024 30790804 ~ 30798791 (-) True nagpa
XM_021558542.2 mRNA downstream 116412 30761285 ~ 30773403 (-) True LOC110486727
XM_021558487.2 mRNA downstream 131272 30748055 ~ 30758543 (-) True LOC110486705
trnae-cuc mRNA upstream 997 30897337 ~ 30897408 (-) False trnae-cuc
trnas-aga-3 mRNA upstream 15137 30911477 ~ 30911558 (-) True trnas-aga-3
trnas-aga-4 mRNA upstream 17192 30913532 ~ 30913613 (-) True trnas-aga-4
trnas-aga-5 mRNA upstream 40196 30936536 ~ 30936617 (-) True trnas-aga-5
trnas-aga-6 mRNA upstream 69035 30965375 ~ 30965456 (-) True trnas-aga-6
TU150630 other downstream 1011247 29869046 ~ 29878568 (-) True LOC110486376
TU149442 other downstream 2411984 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 2579083 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 2739829 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 3123283 27766157 ~ 27766532 (-) True G129250
TU151689 other upstream 686 30897026 ~ 30899564 (-) True trnae-cuc
TU152152 other upstream 296079 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 296126 31192466 ~ 31195186 (-) False LOC110486852
TU152142 other upstream 296126 31192466 ~ 31196292 (-) False LOC110486852
TU152143 other upstream 296126 31192466 ~ 31195186 (-) False LOC110486852

Expression Profile