RNA id: trnae-cuc


Basic Information

Item Value
RNA id trnae-cuc
length 72
RNA type mRNA
GC content 0.55
exon number 1
gene id trnae-cuc
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30897026 ~ 30899564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccctggtggtctagtggttaggattcggcgctctcaccgccgcggcccgggttcgattcccggtcagggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151683 lncRNA downstream 81475 30814673 ~ 30815862 (-) False G131663
TU151680 lncRNA downstream 81475 30814763 ~ 30815862 (-) True G131663
TU151677 lncRNA downstream 86610 30810324 ~ 30810727 (-) True G131661
TU151635 lncRNA downstream 166036 30730724 ~ 30731301 (-) True G131630
TU151634 lncRNA downstream 167690 30729432 ~ 30729647 (-) True G131629
TU151740 lncRNA upstream 17930 30915338 ~ 30918439 (-) True G131712
TU151755 lncRNA upstream 203571 31100979 ~ 31101745 (-) True G131723
TU152094 lncRNA upstream 254183 31151591 ~ 31152623 (-) False G132020
TU152095 lncRNA upstream 254183 31151591 ~ 31175420 (-) False G132020
TU152093 lncRNA upstream 275548 31172956 ~ 31175420 (-) True G132020
XR_002468109.2 mRNA downstream 997 30889815 ~ 30896340 (-) False c2h8orf37
XM_021558578.2 mRNA downstream 997 30889941 ~ 30896340 (-) False c2h8orf37
trnas-aga-2 mRNA downstream 1113 30896143 ~ 30896224 (-) True trnas-aga-2
trnas-aga mRNA downstream 2375 30894881 ~ 30894962 (-) True trnas-aga
XM_021558501.2 mRNA downstream 98546 30779459 ~ 30798791 (-) False nagpa
trnas-aga-3 mRNA upstream 14069 30911477 ~ 30911558 (-) True trnas-aga-3
trnas-aga-4 mRNA upstream 16124 30913532 ~ 30913613 (-) True trnas-aga-4
trnas-aga-5 mRNA upstream 39128 30936536 ~ 30936617 (-) True trnas-aga-5
trnas-aga-6 mRNA upstream 67967 30965375 ~ 30965456 (-) True trnas-aga-6
trnas-aga-7 mRNA upstream 72543 30969951 ~ 30970032 (-) True trnas-aga-7
TU151687 other downstream 1354 30889693 ~ 30895983 (-) True c2h8orf37
TU150630 other downstream 1018769 29869046 ~ 29878568 (-) True LOC110486376
TU149442 other downstream 2419506 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 2586605 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 2747351 28096682 ~ 28149986 (-) True LOC110485663
TU152152 other upstream 295011 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 295058 31192466 ~ 31195186 (-) False LOC110486852
TU152142 other upstream 295058 31192466 ~ 31196292 (-) False LOC110486852
TU152143 other upstream 295058 31192466 ~ 31195186 (-) False LOC110486852
TU152144 other upstream 295058 31192466 ~ 31195720 (-) False LOC110486852