RNA id: trnas-aga-17


Basic Information

Item Value
RNA id trnas-aga-17
length 82
RNA type mRNA
GC content 0.52
exon number 1
gene id trnas-aga-17
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31000051 ~ 31000132 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgtcgtggccgagtggttaaggcgatggactagaaatccattgggatcttcccgcgcaggttcgaatcctgccgacaacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151740 lncRNA downstream 81612 30915338 ~ 30918439 (-) True G131712
TU151683 lncRNA downstream 184189 30814673 ~ 30815862 (-) False G131663
TU151680 lncRNA downstream 184189 30814763 ~ 30815862 (-) True G131663
TU151677 lncRNA downstream 189324 30810324 ~ 30810727 (-) True G131661
TU151635 lncRNA downstream 268750 30730724 ~ 30731301 (-) True G131630
TU151755 lncRNA upstream 100847 31100979 ~ 31101745 (-) True G131723
TU152094 lncRNA upstream 151459 31151591 ~ 31152623 (-) False G132020
TU152095 lncRNA upstream 151459 31151591 ~ 31175420 (-) False G132020
TU152093 lncRNA upstream 172824 31172956 ~ 31175420 (-) True G132020
TU152160 lncRNA upstream 195234 31195366 ~ 31195720 (-) True LOC110486852
trnas-aga-16 mRNA downstream 1973 30997997 ~ 30998078 (-) True trnas-aga-16
trnas-aga-15 mRNA downstream 4044 30995926 ~ 30996007 (-) True trnas-aga-15
trnas-aga-14 mRNA downstream 6107 30993863 ~ 30993944 (-) True trnas-aga-14
trnas-aga-13 mRNA downstream 8160 30991810 ~ 30991891 (-) True trnas-aga-13
trnas-aga-12 mRNA downstream 10223 30989747 ~ 30989828 (-) True trnas-aga-12
trnas-aga-18 mRNA upstream 1974 31002106 ~ 31002187 (-) True trnas-aga-18
trnas-aga-19 mRNA upstream 4029 31004161 ~ 31004242 (-) True trnas-aga-19
trnas-aga-20 mRNA upstream 6231 31006363 ~ 31006444 (-) True trnas-aga-20
trnas-aga-21 mRNA upstream 8285 31008417 ~ 31008498 (-) True trnas-aga-21
trnas-aga-22 mRNA upstream 10339 31010471 ~ 31010552 (-) True trnas-aga-22
TU151689 other downstream 100487 30897026 ~ 30899564 (-) True trnae-cuc
TU151687 other downstream 104068 30889693 ~ 30895983 (-) True c2h8orf37
TU150630 other downstream 1121483 29869046 ~ 29878568 (-) True LOC110486376
TU149442 other downstream 2522220 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 2689319 28310319 ~ 28310732 (-) False G129582
TU152152 other upstream 192287 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 192334 31192466 ~ 31195186 (-) False LOC110486852
TU152142 other upstream 192334 31192466 ~ 31196292 (-) False LOC110486852
TU152143 other upstream 192334 31192466 ~ 31195186 (-) False LOC110486852
TU152144 other upstream 192334 31192466 ~ 31195720 (-) False LOC110486852