RNA id: trnas-aga-31


Basic Information

Item Value
RNA id trnas-aga-31
length 82
RNA type mRNA
GC content 0.52
exon number 1
gene id trnas-aga-31
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31031692 ~ 31031773 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgtcgtggccgagtggttaaggcgatggactagaaatccattgggaTCTTTCCGCGCAGGTTCGACTCCTGCCGACAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151740 lncRNA downstream 113253 30915338 ~ 30918439 (-) True G131712
TU151683 lncRNA downstream 215830 30814673 ~ 30815862 (-) False G131663
TU151680 lncRNA downstream 215830 30814763 ~ 30815862 (-) True G131663
TU151677 lncRNA downstream 220965 30810324 ~ 30810727 (-) True G131661
TU151635 lncRNA downstream 300391 30730724 ~ 30731301 (-) True G131630
TU151755 lncRNA upstream 69206 31100979 ~ 31101745 (-) True G131723
TU152094 lncRNA upstream 119818 31151591 ~ 31152623 (-) False G132020
TU152095 lncRNA upstream 119818 31151591 ~ 31175420 (-) False G132020
TU152093 lncRNA upstream 141183 31172956 ~ 31175420 (-) True G132020
TU152160 lncRNA upstream 163593 31195366 ~ 31195720 (-) True LOC110486852
trnas-aga-30 mRNA downstream 1982 31029629 ~ 31029710 (-) True trnas-aga-30
trnas-aga-29 mRNA downstream 3994 31027617 ~ 31027698 (-) True trnas-aga-29
trnas-aga-28 mRNA downstream 7349 31024262 ~ 31024343 (-) True trnas-aga-28
trnas-aga-27 mRNA downstream 9412 31022199 ~ 31022280 (-) True trnas-aga-27
trnas-aga-26 mRNA downstream 11475 31020136 ~ 31020217 (-) True trnas-aga-26
trnas-aga-32 mRNA upstream 1982 31033755 ~ 31033836 (-) True trnas-aga-32
trnas-aga-33 mRNA upstream 7348 31039121 ~ 31039202 (-) True trnas-aga-33
trnas-aga-34 mRNA upstream 9411 31041184 ~ 31041265 (-) True trnas-aga-34
trnas-aga-35 mRNA upstream 11474 31043247 ~ 31043328 (-) True trnas-aga-35
trnas-aga-36 mRNA upstream 13537 31045310 ~ 31045391 (-) True trnas-aga-36
TU151689 other downstream 132128 30897026 ~ 30899564 (-) True trnae-cuc
TU151687 other downstream 135709 30889693 ~ 30895983 (-) True c2h8orf37
TU150630 other downstream 1153124 29869046 ~ 29878568 (-) True LOC110486376
TU149442 other downstream 2553861 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 2720960 28310319 ~ 28310732 (-) False G129582
TU152152 other upstream 160646 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 160693 31192466 ~ 31195186 (-) False LOC110486852
TU152142 other upstream 160693 31192466 ~ 31196292 (-) False LOC110486852
TU152143 other upstream 160693 31192466 ~ 31195186 (-) False LOC110486852
TU152144 other upstream 160693 31192466 ~ 31195720 (-) False LOC110486852