RNA id: XR_005036326.1


Basic Information

Item Value
RNA id XR_005036326.1
length 1488
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC110486768
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31128831 ~ 31130721 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGAGGAGACGGAGACCATGCTGACCGAGATGCATGTTGGCCATTTCGGAGTCAAGCCATGATTGCCAAAATCAACAGACACAACTTTTGGCATGGGATTGTCAAGGAAGTGGACAGCTGGGCAAGTGAAACAACAGTTTGTTTATCGATCACATTCTATTATGTCTGAAATTATTTCGATTTCAATGAATGTCATATCAGAGAGAACATAATGTTTAAATGTGTCACCTTGTGCTTAAAGAAAGTACCTGTCTAGCCTGATGGCGACCGATTATTTTACCAATTGGGTGGAGGCAATACCCATTAAGCTCTGCAAATGAAGAGAACGTGCTTAACTCTAAATTCCCTTCTGTAAttcttggaaccaaaaatgtattttcttttgTATGATACCAGACTGGCGAGGCCACCTCCAAGGCGATGATGGACATCATCAAACACCCATGGTTCTCCTGAGGTCACCTTGAGTGACCGAGGTCGTAAACTCTGGAacaaggtagagttattataggtTATATTGTGTCACCAATGGTTTGTGttagtttatttttttacaattagtTTTTGTTTTTCCATGGTACATAATCAGACATTTCAATATCTTCCATTGTTAATAGATATCCCTTTCCTAGCCCCTCATCCAGGTTTGGATGAACAGACAAACCACACCCTCAAGACTGCCATGGGCAAGTCCCTTGACTGGCTCCAAGAATAGTTGGAGGACAACCTGAAGGTAATTATCTTTGCACACAACAGCATCTTCCAGGCCTCCAGAGTACTCACCCTATCGCCTACTGTAAGGATGGGAGTTGCAGCTGTTTACTGAGGTATACAATGCAATTGTATATAAAATGATTGCCTATACTGTAGTCTAAAAAATGTGTGATTGACTTTGTGTTTTTCTATTGCTATTTTTGTACAACGTACTTTGAGGTCACTAATAGATGTGGTGGAAGTTGAACACCTTCAAGGACCACCTTCAGGCACGGACTGAGaaggatgtgtttttttttaccaggtcAACATTATTGTCCGCTGTTAATTTATTTTCAGGTCTTCCAAGAGATACATAAGAGATGCATTTGTAATAATATGATACATATAATATGCATTTATTTAAATTATCAATCAAGGTGAGACTGAACATGGACAAGGCgcaggagaaacagaaggaggGCCACCGGAGGAGAATCAAGGGGACCAAGTGCTTTGACATCTGGGTGAATGACTTGGGTTGGAAGAAGGACGAAAGGAAGGCGAGACCTGGGAAAGCTTGGTGCTTTTTCACTCCTAGCTGGGGTCAACATCCGTTAAGGGACCATCCCTTATAACCCCACTGACATCAAATATTAGACAGgacctaggggGTTCTGCCTAACACTCAGACATGGATCCACCTGATGTTCTCCATTACCAACCACCCTCCAACTTTTCATTACATCATCTACAGCtactgttattgtcatgttgtcattATCTGCTAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151755 lncRNA downstream 27086 31100979 ~ 31101745 (-) True G131723
TU151740 lncRNA downstream 210392 30915338 ~ 30918439 (-) True G131712
TU151683 lncRNA downstream 312969 30814673 ~ 30815862 (-) False G131663
TU151680 lncRNA downstream 312969 30814763 ~ 30815862 (-) True G131663
TU151677 lncRNA downstream 318104 30810324 ~ 30810727 (-) True G131661
TU152094 lncRNA upstream 20870 31151591 ~ 31152623 (-) False G132020
TU152095 lncRNA upstream 20870 31151591 ~ 31175420 (-) False G132020
TU152093 lncRNA upstream 42235 31172956 ~ 31175420 (-) True G132020
TU152160 lncRNA upstream 64645 31195366 ~ 31195720 (-) True LOC110486852
TU152165 lncRNA upstream 68683 31199404 ~ 31202388 (-) True G132066
trnas-aga-54 mRNA downstream 29007 31099743 ~ 31099824 (-) True trnas-aga-54
trnas-aga-53 mRNA downstream 31900 31096850 ~ 31096931 (-) True trnas-aga-53
trnas-aga-52 mRNA downstream 34769 31093981 ~ 31094062 (-) True trnas-aga-52
trnas-aga-51 mRNA downstream 49114 31079636 ~ 31079717 (-) True trnas-aga-51
trnas-aga-50 mRNA downstream 51983 31076767 ~ 31076848 (-) True trnas-aga-50
XM_021558595.2 mRNA upstream 20832 31151553 ~ 31153817 (-) True LOC110486775
XM_021558653.2 mRNA upstream 42246 31172967 ~ 31175530 (-) True LOC110486829
XM_021558672.2 mRNA upstream 49288 31180009 ~ 31188962 (-) False LOC110486838
XM_021558664.2 mRNA upstream 49288 31180009 ~ 31191472 (-) True LOC110486838
XM_021558683.2 mRNA upstream 61742 31192463 ~ 31196175 (-) False LOC110486852
TU151689 other downstream 229267 30897026 ~ 30899564 (-) True trnae-cuc
TU151687 other downstream 232848 30889693 ~ 30895983 (-) True c2h8orf37
TU150630 other downstream 1250263 29869046 ~ 29878568 (-) True LOC110486376
TU149442 other downstream 2651000 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 2818099 28310319 ~ 28310732 (-) False G129582
TU152152 other upstream 61698 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 61745 31192466 ~ 31195186 (-) False LOC110486852
TU152142 other upstream 61745 31192466 ~ 31196292 (-) False LOC110486852
TU152143 other upstream 61745 31192466 ~ 31195186 (-) False LOC110486852
TU152144 other upstream 61745 31192466 ~ 31195720 (-) False LOC110486852

Expression Profile