RNA id: XM_036945598.1


Basic Information

Item Value
RNA id XM_036945598.1
length 2345
RNA type mRNA
GC content 0.39
exon number 7
gene id LOC110486784
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31136808 ~ 31146454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaagGCAGATATCGACTCTTCCgcttgagcatgcttttgcggaacagtcgatagcgcgccgaaCCTCgtgctagaaggtcgagggttctaTTATGGGTGTATAAACTGATTTGACTTCTGTTCTGGATCGTCTTCATTGCTGTAGTTCTACAAATATGTTTTTTCAACTCGTCTGCATTCTAGTCTCCGTATTCTCAGTCTCAGTGTGCGCAGCCTCAGTAGGGGAGAAGCTGGTTTCCTACACATGTCAAGAGGGTACAAACACACTTGAAGCACCATTTGGAGCAGTGGATCCCCAATGTGATCAGAGCTGGACCACTGGCAACAAGTCCATTGCCTACTATGAAAATGGCAAAGGTGAATGCAGTTTTTCATGCGAAGAAGTGATCTCTGGCAGAGTCCTCCTCCGTGAATGTCCCAATGTCACATTAACTATTGGTTGCACCACCAAGGATGGGGTATATGAAGAGACCAGGTTGCGCTTCTCAGCGATAAGCAGACCAGCTGTCTCTATGACAACCACTAACACTGCAAACAATCATATCGCACATTATGGGATAAGTGTCAGCAACCAAGCTTTGCCTCCGAAAACTGCCAGCACTGCCTCTACAAACGTTCAACATGCTCATTATGGATTAATTATATTCTCGGTCCTGTCACCTCTGGTTATTGTGATCAGCGTGATCATCAGCCGTTACTGCAGATCTCGTCCAAATGAAGGTGAGGAGGCTTCATCCATGGTGTTGTAATCCCCCCAAAGGACCTAGATGACATATATCCTGCCAATGAAGAATACTGAATCAGGCATTATCTTAAAATTTAGCCAGTAGGATTATTGACAGGTAATCCTTTCGGGACTGCTGCTCTACCTCTCAAAAGGGAAAGAAAATGAGCTTTTAGACCATGTAGGTTTTTAGTTTCATTGCAGACAAATTAAAATGATGTAGTTCTGTGAAGCACTCAATGTTGTGCACTTTCCTGCATTCTCTTTTAATTCCAATACTCGAATAACCCCCTAAACTTGTTTACCAGTGATGCAGGAGACGTTGGCAGTCTTTTCACCTAAGACAGGAAGGAAAAAAGCCATAGATCTTTTTTGGTGAAAATGTGTTCTTGCTGCTAACATTTGAAACTGCTCTGCATCACAATGCTGGGACATAGCTAGTGTTgtagtattaatgtagtaacAAGTATTTCCAATCTATTtattgctgacagatgtataagtGTAAAATGAGGAAGGTATGGTATTTCTAGGTATTTtaaccaacagtacagtaattgTTACACTGTACATTGCCATTTCTCTCTTACATATTTGTGAAAACTGTTAATATGACAGTTAGCTACAGTAGATGGTAGCGATGCCAAGCAGTAACAGAAAGCACTCAATGTTCATCAGTTCACCTTGGCCTTGGAAGTGATGAAATGAACCAGCAATTGGCGACTTACTCTTCTGAAATCCTAATGCTATTGAGTAAGGTACTCAACCTGTGGGACCAGtgtctatggcaagacttgaaaatggccgtctagccatgatcaacaaccaacttgacagagcttgaagaattttaaaaagaataatgtgcaaatattgtacaatccaggtgtgcaaagctcttaagagacttacccTGAAATCGCTGCCAGAGGTGAAGCTAAcatatacttatgtaaattagatatatctgtatttcatttatttattctaaaaacaggttttaaatttgtcactgtggggtattgtgtgtagatgggtgagagaaaaaatcAGGCtgtcacaacaaaatgtggaataagtcgacAGGTATGAATACTTTAGGCACTATCGATTTTAGAGATGCAGTAACAGAAAGTGCTCAAGGTTAATCGTTCATCTTGGGCTTGGAAGTGATGAAATGAGCTGGCAATTGGAGAGTTACTGGTCTGAAATCCTAATGCTGTTGTGGCATGAGAAAGGTGCTGTGGGACCAGTGTCAAAATTAGCAAGgataaaaatgttaaaagcatTTTATTATTGGTTGATATCACATTTCATGGAGACTTACCAAACATCTGTTATTCTAATTCTTCTTATATTAACTGACAAACTGAATTTGATACACACTAGTATTATTACATGAGCTGCAAATAAGCTCCATTTCTTTTTTAGGTCTGTTGCTTTGCATTTGTATGCATTTGTATTAacaactgctaaccatgtgtatgtgaccaataacatttgatatgATTTAATTCTGttaagattattattattattattattattatgcaaTAATGTGTTGTGTGCTATGATCACACGGGTGTCATGAAAAAATGTCACTGTATGACCCATATCCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151776 lncRNA upstream 12166 31116142 ~ 31124644 (+) True G131742
TU151753 lncRNA upstream 35845 31100748 ~ 31100965 (+) True G131721
TU151752 lncRNA upstream 37365 31099200 ~ 31099445 (+) True G131720
TU151751 lncRNA upstream 80524 31056060 ~ 31056286 (+) True G131719
TU151557 lncRNA upstream 228579 30902804 ~ 30908231 (+) True G131556
TU151810 lncRNA downstream 41554 31188008 ~ 31188315 (+) True G131773
TU151819 lncRNA downstream 48924 31195378 ~ 31195723 (+) True G131777
TU151824 lncRNA downstream 61522 31207976 ~ 31208235 (+) True G131782
TU151836 lncRNA downstream 81719 31228173 ~ 31228578 (+) True G131794
TU151861 lncRNA downstream 103165 31249619 ~ 31249833 (+) True G131813
XM_036945585.1 mRNA upstream 245424 30873733 ~ 30891386 (+) False LOC110534689
XM_036945587.1 mRNA upstream 245424 30873733 ~ 30891386 (+) True LOC110534689
XM_021619612.2 mRNA upstream 280764 30851297 ~ 30856046 (+) True LOC110534679
XM_036945569.1 mRNA upstream 292511 30828239 ~ 30844299 (+) False plekhf2
XM_036933421.1 mRNA downstream 52881 31199335 ~ 31202392 (+) False sri
XM_021617743.2 mRNA downstream 52992 31199446 ~ 31202392 (+) False sri
NM_001165117.2 mRNA downstream 53072 31199526 ~ 31202385 (+) True sri
XM_021558742.2 mRNA downstream 62531 31208985 ~ 31222079 (+) False LOC110486889
XM_021558750.2 mRNA downstream 62531 31208985 ~ 31222079 (+) True LOC110486889
TU151514 other upstream 386856 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 436187 30700182 ~ 30700623 (+) True G131491
TU150298 other upstream 1346979 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 1442959 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 1495714 29600026 ~ 29641096 (+) True G130308
TU151868 other downstream 145016 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 213982 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 213982 31360436 ~ 31366322 (+) True eaf1
TU152486 other downstream 711194 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 711232 31857686 ~ 31883073 (+) True G132342

Expression Profile