RNA id: XM_021558672.2


Basic Information

Item Value
RNA id XM_021558672.2
length 3493
RNA type mRNA
GC content 0.49
exon number 26
gene id LOC110486838
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31180009 ~ 31191472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTAGACGTCTAAGGTCACCTAATTGTTCGTCCTCAAAACGGTTATTAATTTAAGAAGGAGTTAAAAGTGTAACGAAATAAGAGCGCCTGTAGGCTATTCATTTTGAGCTGAGAGGTCTTCCATCTTCCAACAAAGGTTTTGGTTATCTCTCCGCTGCTCGTGTTCCTATTGTGCATCCTCCCCTCCCACGCCCAGGACGAGTACTCTGGTTACCACTCAGGTGATGAACACACCTATGAGGGCTCCTTGGTCGACAACTATGAGCGTTCAGGATACCCACAACCAGAGGAATACCCACCGGAGCCCACTCACAGCTATGAGGAGCAGCAACCCTCATCTGGATATGACCCCTATGCACCAGCCCCCACCAGTGTGAGCATGATCACAGAGGACTCCtacccctacaccaccaccacacagGTACCATACGAGCAGGAGCCCTACGAAGAGTCGCTCCAGGCCCCTGGTGGTGGGGAGGCTTCTCTGGGGGAGGAGGGGCCAACAGACTGTAACTGTGAGCCTGGAGAGCCAGGGTTCGCTGGGTTTGCAGGGCCCAAGGGAGCCAGAGGACTGCAAGGTAAAGATGGCTTCCCTGGGGTTCAGGGACGGGAGgggTACAAAGGATTCAAAGGAGTTctaggaagaggaggagacacaggGCCTGAGGGTGACTCCGGGCCTGATGGGGAGGGCGGTGCCTCTGGTTTCTCTGGAGCCCAGGGCTTGCCTGGTCTTCCTGGAGATCCAGGTGAGACAGGGGTGCTAGGACTGAAGGGTGACATCGGTATGGAGGGGCCACGCGGAGGAGTGGGGGTAACGGGTGAAACTGGTCGAATTGGTGAGGCAGGGCCTGGTGGGCCTGATGGAACTGGAGGTATCAAGGGATCAACTGGAGCAGAAGGGAAACAGGGTCCTGAGGGAACAGAAGGGGAAAAGGGTCAGATTGGAGCACCTGGATTCTCAGGAGACCATGGGGAGATGGGCTATAATGGGTATCCTGGAGAGCCGGGAGGCAGAGGAGAGACCGGTCACAAGgGTGACCAAGGCCCAGGGGGCATGCCAGGCAGTGATGGGGAGCCTGGAGAGGATGGTCCTCTTGGAGTTCCTGGGGTGATCGGCTTTCCTGGAGAGTTTGGACAAAAGGGCACAAGCGGGGATCGTGGTGTGAGGGGACCTCCTGGGAGAGTAGGAGCTGGGGGGCCTCAAGGAGCGAGAGGAGATGCAGGAATTCCAGGGAAACCAGGACCTAAAGGCCTGCAGGCCCAGCCTGGAGCCAAAGGGGAGACAGGACCTGATGGTGAGAAGGGTGGGGTTGGAAGAACTGGTGTGAAGGGAGAAAAAGAGGACAAGGGAAGTTTTGGAGCACGTGGTGACAAAGGACAGCAAGGGGAGAGAGGTACCATCGGCCCTGATGGCATTGTTGGACGAAATGGCCCCCCCGGCATCCCAGGCTCCAGAGGAGAGCCAGGTCCAGGTGGTGACCTGGGCGTCAAAGGTGGCTCTGGACCTAAAGGAGTGCCAGGTGCCCCTGGCCCTGGGCTGACAGATGAGCAGGTATTGCAGCTGTGTAAAGGAGTGGTGACAGCCCAGATCTCCCAGTATGCAGCTTCCATCCGGGTCAAGTGTTCCCAGGGCTGCCCCATCAACAACCGCACACTTATTGGGCCGCCCGGAACCAGGGGACCAACTGGAGAATCAGGCAAACCCggtaaaGCGGGCAAAGCTGGAGTGAAAGGAGGCAGGGGCATCCAAGGGGACACAGGAGTGGATGGTCAGAAGGGGACAGTGGGTGAAAGAGGAACAAAAGGCCCGAAAGGAAAGGGCGGTGAGCCTGGTAAAGGTCTGCCAGGACACGATGGGCATCAAGGCCTCAGAGGGCTGCCAGGCCACCCAGCAGAGCCAAAGAATGGTATGGCAGGTCACAGAGGGCCCCGTGGTTTCACAGGCGCTTTGGGCCAGCCTGGCATGGCAGGCAACGCAGGAGTGCCCGGCTTCTGTGAGGCACGGGACTGCAGCATTCACGCGCCTGTGATGCGCAAGGAGCAGGGCCTAGTGAAGGGACCCCGCGATCTAAGCCCCAAGATTTAACCCCAACAAGGAGCTTCAGGAATAGGTGAAGGTCCACGACGAGGGGTCACTCTGGACGGTCGCTCCATGACAACATTGAAGTTAATTCAATTCACATCTCAGCCAAACCAGGAATTGACATTGAGTTTTGAACTGGGAAATTACCAATGTGTACAGCATTGATCTTTTTGAATTTCATGCCTAATTCAATTCCTGTATTGACTGGTATTGAAATGTAATTAATCCGAGCACTGTTCAATGGGGCTCACCAGTGATGGAAGGGTTTGGTGGGACACGCTGGACTCTGCACAGAGATGAAACCAGCCTTGACGCATTTCATCTGAGCCAAGCAAGGCTCCAAATGAACTCTGTTTAGGCATAATTGATAACTTTTTTGTTAGgccaaaatagatttttttatgCAGAAACAAAAAATGAAATTGTCTTCCTCCAAGCAAACCATAAGTAAAGGGGCTTGAGAAACTGGCTAAAAGAAATTGGCAGAAAATGAAACTTCCAGGAGTCTCTGGCTACCAGTCAGGTTTTGTTTTTGATATGATCAACAATGATGGGTATACATTGAAAATAAAAAGTGATGTAAATAATTTTGTAAAGTATCGCAAGTACATGTACTGTGTGTTCTGAAATATCACTGTTTTAGATAAATTCTGTCTTACTTTTTCTTAAGATGAGTCCTCACTTTTTTAGTCGCCACAGTTTGAGCGTGTTTCTGAGAATGTGTGGTCTCTTTCAGTCATCTCATATTTGGGTTAATCTAAATAATTTATCCCTCCCCCCCAATTAACAGATGTTCACAGTCAAGATAACATTGatcaatataaaataaaaaataacatactATTTGATATTATTTCATATTAAAAATAATACATTGAAatgtgttatacagtatattgtatttgGAATTTCTATAGTTAAATAATCTGACAATGATTTGTAGGACAGCACAAAATGTCTGTCGATTAAATACATTTACTATATTCATTGGATGGCGATTTTGATTTTTAAATAGATTTTCATGTACATTATTTATTTTGCATAAATAACTTTCACGTGAACAGGATGTTAAACTCTTATCACCTCTTAATTGATATTTTTGTCATTGTCAATCTTCATTGAGAATCATTCCAACACATTACAAGGCAGAAACATAGCCCTGTAAACTCAAGTATATCACACACGTGTTCTTAACATTTGTACTTTTGTGTACATGTTGGCAATCAGAACCCTGATACAAAAGAGTCACAATGTTTGGAGACAATTCAGATTAGAAAATGAGCAGAGCATGAAAATGGGTGATTATCTCTCATCAAAAGCATGCTAAACATTATGGTATACAACTATGCTATGAAAGTACACATGAATAAACACAAGAAAATAAACCTTATTAAAATGTTTAACGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152095 lncRNA downstream 4589 31151591 ~ 31175420 (-) False G132020
TU152093 lncRNA downstream 4589 31172956 ~ 31175420 (-) True G132020
TU152094 lncRNA downstream 27386 31151591 ~ 31152623 (-) False G132020
TU151755 lncRNA downstream 78264 31100979 ~ 31101745 (-) True G131723
TU151740 lncRNA downstream 261570 30915338 ~ 30918439 (-) True G131712
TU152160 lncRNA upstream 6404 31195366 ~ 31195720 (-) True LOC110486852
TU152165 lncRNA upstream 10442 31199404 ~ 31202388 (-) True G132066
TU152176 lncRNA upstream 36296 31225258 ~ 31225789 (-) True G132075
TU152131 lncRNA upstream 39989 31228951 ~ 31229522 (-) True G132055
TU152129 lncRNA upstream 66952 31255914 ~ 31258119 (-) True G132053
XM_021558653.2 mRNA downstream 4479 31172967 ~ 31175530 (-) True LOC110486829
XM_021558595.2 mRNA downstream 26192 31151553 ~ 31153817 (-) True LOC110486775
XR_005036326.1 mRNA downstream 49288 31128831 ~ 31130721 (-) True LOC110486768
trnas-aga-54 mRNA downstream 80185 31099743 ~ 31099824 (-) True trnas-aga-54
trnas-aga-53 mRNA downstream 83078 31096850 ~ 31096931 (-) True trnas-aga-53
XM_021558683.2 mRNA upstream 3501 31192463 ~ 31196175 (-) False LOC110486852
XM_021558703.2 mRNA upstream 7955 31196917 ~ 31199220 (-) False LOC110486868
XM_021558711.2 mRNA upstream 7955 31196917 ~ 31199220 (-) False LOC110486868
XM_036945637.1 mRNA upstream 7955 31196917 ~ 31199220 (-) False LOC110486868
XM_036945651.1 mRNA upstream 7955 31196917 ~ 31199220 (-) False LOC110486868
TU151689 other downstream 280445 30897026 ~ 30899564 (-) True trnae-cuc
TU151687 other downstream 284026 30889693 ~ 30895983 (-) True c2h8orf37
TU150630 other downstream 1301441 29869046 ~ 29878568 (-) True LOC110486376
TU149442 other downstream 2702178 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 2869277 28310319 ~ 28310732 (-) False G129582
TU152152 other upstream 3457 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 3504 31192466 ~ 31195186 (-) False LOC110486852
TU152142 other upstream 3504 31192466 ~ 31196292 (-) False LOC110486852
TU152143 other upstream 3504 31192466 ~ 31195186 (-) False LOC110486852
TU152144 other upstream 3504 31192466 ~ 31195720 (-) False LOC110486852

Expression Profile