RNA id: TU152160


Basic Information

Item Value
RNA id TU152160
length 331
lncRNA type intronic
GC content 0.53
exon number 2
gene id LOC110486852
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31192419 ~ 31196292 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggacggccaggtcttggtacatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaactgcctggtgtgttccttgctcttcatgatgctctctgcccttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcgctgaaagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152095 lncRNA downstream 19946 31151591 ~ 31175420 (-) False G132020
TU152093 lncRNA downstream 19946 31172956 ~ 31175420 (-) True G132020
TU152094 lncRNA downstream 42743 31151591 ~ 31152623 (-) False G132020
TU151755 lncRNA downstream 93621 31100979 ~ 31101745 (-) True G131723
TU151740 lncRNA downstream 276927 30915338 ~ 30918439 (-) True G131712
TU152165 lncRNA upstream 3684 31199404 ~ 31202388 (-) True G132066
TU152176 lncRNA upstream 29538 31225258 ~ 31225789 (-) True G132075
TU152131 lncRNA upstream 33231 31228951 ~ 31229522 (-) True G132055
TU152129 lncRNA upstream 60194 31255914 ~ 31258119 (-) True G132053
TU152191 lncRNA upstream 73455 31269175 ~ 31269380 (-) True G132090
XM_021558664.2 mRNA downstream 3894 31180009 ~ 31191472 (-) True LOC110486838
XM_021558672.2 mRNA downstream 6404 31180009 ~ 31188962 (-) False LOC110486838
XM_021558653.2 mRNA downstream 19836 31172967 ~ 31175530 (-) True LOC110486829
XM_021558595.2 mRNA downstream 41549 31151553 ~ 31153817 (-) True LOC110486775
XR_005036326.1 mRNA downstream 64645 31128831 ~ 31130721 (-) True LOC110486768
XM_021558703.2 mRNA upstream 1197 31196917 ~ 31199220 (-) False LOC110486868
XM_021558711.2 mRNA upstream 1197 31196917 ~ 31199220 (-) False LOC110486868
XM_036945637.1 mRNA upstream 1197 31196917 ~ 31199220 (-) False LOC110486868
XM_036945651.1 mRNA upstream 1197 31196917 ~ 31199220 (-) False LOC110486868
XR_005036345.1 mRNA upstream 1197 31196917 ~ 31199220 (-) False LOC110486868
TU152152 other downstream 180 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other downstream 180 31192466 ~ 31195186 (-) False LOC110486852
TU152143 other downstream 180 31192466 ~ 31195186 (-) False LOC110486852
TU152145 other downstream 180 31192615 ~ 31195186 (-) False LOC110486852
TU151689 other downstream 295802 30897026 ~ 30899564 (-) True trnae-cuc
TU152092 other upstream 1353 31197073 ~ 31198812 (-) True LOC110486868
TU152311 other upstream 340327 31536047 ~ 31543009 (-) True G132197
TU152378 other upstream 439600 31635320 ~ 31648795 (-) True LOC110486999
TU154326 other upstream 1543109 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 1543109 32738829 ~ 32751578 (-) False LOC110514821

Expression Profile